Wall clock time and date at job start Sat Apr 11 2020 05:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47079 * 2 1 4 4 H 1.08999 * 109.47561 * 57.18577 * 3 2 1 5 5 C 1.50699 * 109.47241 * 177.19266 * 3 2 1 6 6 H 1.08000 * 120.00161 * 119.99125 * 5 3 2 7 7 C 1.37881 * 119.99963 * 299.99670 * 5 3 2 8 8 N 1.31512 * 119.99892 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99967 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46872 * 60.00170 * 9 7 5 11 11 H 1.48503 * 109.46903 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47459 * 299.99964 * 9 7 5 13 13 O 1.45205 * 109.46768 * 297.18998 * 3 2 1 14 14 C 1.34231 * 116.99973 * 110.02039 * 13 3 2 15 15 O 1.20824 * 119.99791 * 355.55979 * 14 13 3 16 16 C 1.50696 * 119.99923 * 175.55515 * 14 13 3 17 17 H 1.09000 * 109.47628 * 321.85162 * 16 14 13 18 18 N 1.46497 * 109.47315 * 201.85403 * 16 14 13 19 19 C 1.34773 * 120.00636 * 155.00206 * 18 16 14 20 20 O 1.21707 * 119.99845 * 359.97438 * 19 18 16 21 21 C 1.46579 * 120.00718 * 179.97438 * 19 18 16 22 22 C 1.36643 * 125.46484 * 180.02562 * 21 19 18 23 23 C 1.37472 * 113.29964 * 179.97438 * 22 21 19 24 24 C 1.33818 * 115.09898 * 359.97438 * 23 22 21 25 25 S 1.70611 * 110.95640 * 359.76674 * 24 23 22 26 26 C 1.53001 * 109.47388 * 81.85054 * 16 14 13 27 27 C 1.53002 * 109.46798 * 65.70159 * 26 16 14 28 28 C 1.52997 * 109.47534 * 185.69993 * 26 16 14 29 29 H 1.08999 * 109.47043 * 185.46855 * 1 2 3 30 30 H 1.09004 * 109.46984 * 65.46339 * 1 2 3 31 31 H 1.09001 * 109.46905 * 305.46590 * 1 2 3 32 32 H 1.09004 * 109.47121 * 119.99418 * 2 1 3 33 33 H 1.09001 * 109.47482 * 239.99886 * 2 1 3 34 34 H 0.96997 * 120.00290 * 179.97438 * 8 7 5 35 35 H 0.97005 * 120.00141 * 334.99577 * 18 16 14 36 36 H 1.08001 * 123.34974 * 359.94365 * 22 21 19 37 37 H 1.08001 * 122.44907 * 180.02562 * 23 22 21 38 38 H 1.08002 * 124.51823 * 180.02562 * 24 23 22 39 39 H 1.08997 * 109.46941 * 305.70587 * 26 16 14 40 40 H 1.08997 * 109.47165 * 56.03432 * 27 26 16 41 41 H 1.09000 * 109.47109 * 176.03412 * 27 26 16 42 42 H 1.09003 * 109.47071 * 296.03318 * 27 26 16 43 43 H 1.09007 * 109.46634 * 60.00372 * 28 26 16 44 44 H 1.09000 * 109.47097 * 179.97438 * 28 26 16 45 45 H 1.08997 * 109.47492 * 300.00257 * 28 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6361 1.9708 0.8637 5 6 3.5454 1.4432 0.0696 6 1 4.1224 1.8976 -0.7222 7 6 4.1861 0.8634 1.1441 8 7 3.4835 0.3095 2.1079 9 14 6.0521 0.8635 1.2300 10 1 6.5475 2.2634 1.2296 11 1 6.4903 0.1832 2.4751 12 1 6.6019 0.1435 0.0534 13 8 1.6115 2.1073 -1.2177 14 6 0.6768 3.0627 -1.0939 15 8 0.1734 3.2793 -0.0172 16 6 0.2554 3.8650 -2.2979 17 1 1.1259 4.0695 -2.9212 18 7 -0.3383 5.1301 -1.8583 19 6 -0.3291 6.1998 -2.6781 20 8 0.1729 6.1149 -3.7836 21 6 -0.9236 7.4654 -2.2385 22 6 -0.9761 8.6149 -2.9755 23 6 -1.5917 9.6541 -2.3189 24 6 -2.0293 9.3676 -1.0872 25 16 -1.6908 7.7454 -0.6813 26 6 -0.7744 3.0715 -3.1047 27 6 -2.0521 2.9072 -2.2793 28 6 -1.0962 3.8215 -4.3989 29 1 -0.3633 -1.0230 0.0979 30 1 -0.3633 0.4268 -0.9349 31 1 -0.3633 0.5963 0.8370 32 1 1.8934 -0.5138 0.8901 33 1 1.8934 -0.5138 -0.8900 34 1 3.9341 -0.0987 2.8637 35 1 -0.7381 5.1979 -0.9771 36 1 -0.5736 8.6988 -3.9742 37 1 -1.7139 10.6301 -2.7650 38 1 -2.5335 10.0685 -0.4384 39 1 -0.3685 2.0890 -3.3454 40 1 -2.4193 3.8886 -1.9789 41 1 -2.8101 2.4038 -2.8794 42 1 -1.8373 2.3123 -1.3916 43 1 -0.1858 3.9385 -4.9869 44 1 -1.8295 3.2559 -4.9738 45 1 -1.5021 4.8040 -4.1582 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187905029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:45 Heat of formation + Delta-G solvation = -103.100840 kcal Electronic energy + Delta-G solvation = -28003.467951 eV Core-core repulsion = 24112.547498 eV Total energy + Delta-G solvation = -3890.920454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.64868 -39.36968 -37.81395 -36.46950 -35.53431 -33.57858 -33.22990 -31.46735 -30.16439 -28.09755 -27.07636 -26.97686 -25.00707 -23.31586 -21.85797 -21.41977 -19.97782 -19.78333 -19.23313 -18.90139 -17.04229 -16.80507 -16.29868 -16.11819 -15.80422 -15.66886 -14.88532 -14.79718 -14.32306 -14.11910 -13.79344 -13.44301 -13.17795 -13.02309 -12.99009 -12.90320 -12.60655 -12.52532 -12.18747 -11.92732 -11.43662 -11.37616 -11.31031 -11.25567 -11.18412 -11.00524 -10.82837 -10.77739 -10.62694 -10.35087 -10.15248 -9.91275 -9.79793 -9.56554 -9.22918 -9.04624 -8.85011 -8.79794 -8.49910 -6.21165 -4.28363 0.27670 1.22999 1.64334 2.16341 2.63691 2.93411 3.08346 3.25173 3.28835 3.31768 3.65011 4.30557 4.61070 4.73055 4.81980 4.98685 5.04315 5.09860 5.14615 5.21212 5.48773 5.57823 5.66658 5.69225 5.75856 5.91147 5.93007 5.98861 6.05546 6.06737 6.13241 6.17252 6.24434 6.34078 6.41621 6.44481 6.81532 6.84986 7.07405 7.14377 7.33977 7.57208 7.70548 7.86271 8.02445 8.10023 8.48911 8.82034 9.37099 10.85351 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013731 B = 0.003142 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.652417 B = 8909.494371 C = 9651.935595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.128 4.128 3 C 0.216 3.784 4 H 0.055 0.945 5 C -0.529 4.529 6 H 0.067 0.933 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.910 3.090 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.348 6.348 14 C 0.457 3.543 15 O -0.514 6.514 16 C 0.156 3.844 17 H 0.122 0.878 18 N -0.707 5.707 19 C 0.595 3.405 20 O -0.521 6.521 21 C -0.265 4.265 22 C -0.056 4.056 23 C -0.152 4.152 24 C -0.233 4.233 25 S 0.212 5.788 26 C -0.100 4.100 27 C -0.150 4.150 28 C -0.137 4.137 29 H 0.038 0.962 30 H 0.034 0.966 31 H 0.048 0.952 32 H 0.109 0.891 33 H 0.045 0.955 34 H 0.267 0.733 35 H 0.407 0.593 36 H 0.154 0.846 37 H 0.145 0.855 38 H 0.169 0.831 39 H 0.092 0.908 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.051 0.949 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.222 13.371 -7.739 20.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C 0.164 3.836 4 H 0.073 0.927 5 C -0.566 4.566 6 H 0.085 0.915 7 C -0.138 4.138 8 N -0.526 5.526 9 Si 0.736 3.264 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.199 1.199 13 O -0.263 6.263 14 C 0.299 3.701 15 O -0.404 6.404 16 C 0.050 3.950 17 H 0.139 0.861 18 N -0.361 5.361 19 C 0.381 3.619 20 O -0.399 6.399 21 C -0.385 4.385 22 C -0.090 4.090 23 C -0.183 4.183 24 C -0.371 4.371 25 S 0.479 5.521 26 C -0.120 4.120 27 C -0.208 4.208 28 C -0.194 4.194 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.127 0.873 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.244 0.756 36 H 0.172 0.828 37 H 0.163 0.837 38 H 0.186 0.814 39 H 0.110 0.890 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.226 12.297 -6.690 19.259 hybrid contribution 0.970 1.019 -0.437 1.473 sum -12.256 13.316 -7.127 19.450 Atomic orbital electron populations 1.21828 0.98709 0.99777 1.00175 1.21921 0.92343 0.98796 1.03569 1.20817 0.94421 0.88611 0.79764 0.92692 1.21132 0.89798 1.38617 1.07102 0.91467 1.24868 0.99290 0.94685 0.94918 1.69861 1.35693 1.37183 1.09842 0.86365 0.83965 0.78500 0.77530 1.20007 1.21008 1.19890 1.86461 1.50651 1.46288 1.42934 1.23033 0.78140 0.79780 0.89162 1.90575 1.54032 1.66697 1.29127 1.20507 0.98317 0.83208 0.92969 0.86054 1.45633 1.60484 1.10160 1.19810 1.16803 0.78890 0.81634 0.84578 1.90846 1.45420 1.83652 1.20006 1.24622 1.13833 0.99322 1.00728 1.20793 0.97048 0.90206 1.00913 1.20046 1.02476 1.01026 0.94735 1.25380 1.08051 1.01972 1.01705 1.83353 1.50680 1.04401 1.13680 1.21470 0.95232 0.99641 0.95621 1.21875 0.96741 1.02030 1.00130 1.21865 1.01918 0.99896 0.95698 0.94239 0.94715 0.93263 0.87268 0.93640 0.92314 0.75551 0.82803 0.83740 0.81388 0.88992 0.92586 0.92246 0.92033 0.91738 0.93005 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.53 37.16 0.35 -2.63 16 2 C -0.13 -3.05 5.48 -26.73 -0.15 -3.20 16 3 C 0.22 5.55 2.24 -27.88 -0.06 5.49 16 4 H 0.06 1.56 6.69 -51.93 -0.35 1.21 16 5 C -0.53 -14.60 8.90 -34.44 -0.31 -14.90 16 6 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 7 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 8 N -0.89 -24.63 11.30 55.43 0.63 -24.01 16 9 Si 0.91 20.96 29.54 -169.99 -5.02 15.94 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 13 O -0.35 -7.94 9.45 -39.26 -0.37 -8.32 16 14 C 0.46 9.08 5.88 36.00 0.21 9.29 16 15 O -0.51 -11.03 14.73 -18.75 -0.28 -11.30 16 16 C 0.16 2.49 2.45 -69.09 -0.17 2.32 16 17 H 0.12 1.99 7.58 -51.93 -0.39 1.60 16 18 N -0.71 -10.20 3.92 -56.28 -0.22 -10.42 16 19 C 0.59 8.42 6.38 -12.90 -0.08 8.34 16 20 O -0.52 -8.40 13.98 5.18 0.07 -8.33 16 21 C -0.26 -3.12 6.45 -36.80 -0.24 -3.36 16 22 C -0.06 -0.57 10.01 -40.44 -0.40 -0.98 16 23 C -0.15 -1.24 10.15 -41.41 -0.42 -1.66 16 24 C -0.23 -1.83 10.92 29.18 0.32 -1.51 16 25 S 0.21 2.02 22.16 -107.50 -2.38 -0.37 16 26 C -0.10 -1.37 2.73 -90.62 -0.25 -1.62 16 27 C -0.15 -1.94 8.80 37.16 0.33 -1.61 16 28 C -0.14 -1.73 7.81 37.16 0.29 -1.43 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.03 0.65 7.68 -51.93 -0.40 0.25 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.11 2.83 6.00 -51.93 -0.31 2.52 16 33 H 0.04 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 35 H 0.41 5.71 6.85 -40.82 -0.28 5.43 16 36 H 0.15 1.48 8.06 -52.49 -0.42 1.05 16 37 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 38 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.06 0.69 7.31 -51.93 -0.38 0.31 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.90 7.34 -51.93 -0.38 0.52 16 43 H 0.06 0.86 7.88 -51.92 -0.41 0.45 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.77 5.63 -51.93 -0.29 0.48 16 LS Contribution 381.52 15.07 5.75 5.75 Total: -1.00 -30.00 381.52 -9.03 -39.04 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -6.54 Total: 7.84 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -0.67 Total: -5.81 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.41 Total: -34.43 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.57 Total: -27.95 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.38 Total: -0.37 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.00 -9.03 -39.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187905029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.065 kcal (2) G-P(sol) polarization free energy of solvation -30.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds