Wall clock time and date at job start Sat Apr 11 2020 05:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.35598 * 2 1 4 4 C 1.52184 * 109.35642 * 240.27483 * 2 1 3 5 5 N 1.46375 * 111.20001 * 178.60699 * 4 2 1 6 6 S 1.65596 * 119.77517 * 243.71382 * 5 4 2 7 7 O 1.42100 * 104.27647 * 26.09414 * 6 5 4 8 8 O 1.42093 * 104.27822 * 153.95668 * 6 5 4 9 9 C 1.81406 * 104.45030 * 270.02953 * 6 5 4 10 10 C 1.53000 * 109.47209 * 180.02562 * 9 6 5 11 11 C 1.53000 * 109.47169 * 179.97438 * 10 9 6 12 12 C 1.50699 * 109.46900 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00456 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99622 * 179.97438 * 12 11 10 15 15 N 1.31520 * 120.00318 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99834 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47098 * 60.00506 * 16 14 12 18 18 H 1.48501 * 109.47226 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47491 * 300.00323 * 16 14 12 20 20 C 1.46642 * 120.45339 * 63.74277 * 5 4 2 21 21 C 1.51631 * 108.78634 * 279.59162 * 20 5 4 22 22 C 1.37646 * 120.79878 * 243.71879 * 21 20 5 23 23 C 1.38444 * 119.68542 * 182.45488 * 22 21 20 24 24 C 1.38293 * 119.94957 * 0.70899 * 23 22 21 25 25 C 1.38111 * 120.35457 * 359.34554 * 24 23 22 26 26 C 1.38715 * 118.41198 * 65.40715 * 21 20 5 27 27 O 1.35566 * 120.40989 * 354.63915 * 26 21 20 28 28 H 1.09000 * 109.47031 * 179.73174 * 1 2 3 29 29 H 1.09005 * 109.46746 * 299.72019 * 1 2 3 30 30 H 1.08994 * 109.47492 * 59.72362 * 1 2 3 31 31 H 1.08999 * 109.13148 * 58.16314 * 4 2 1 32 32 H 1.08995 * 109.13315 * 299.05531 * 4 2 1 33 33 H 1.09003 * 109.47004 * 299.99991 * 9 6 5 34 34 H 1.08999 * 109.47292 * 59.99266 * 9 6 5 35 35 H 1.09007 * 109.46651 * 299.99594 * 10 9 6 36 36 H 1.08999 * 109.47284 * 59.99784 * 10 9 6 37 37 H 1.08994 * 109.47322 * 299.99807 * 11 10 9 38 38 H 1.08999 * 109.46949 * 59.99879 * 11 10 9 39 39 H 0.96997 * 119.99776 * 179.97438 * 15 14 12 40 40 H 1.08998 * 109.58546 * 159.79819 * 20 5 4 41 41 H 1.09001 * 109.69738 * 39.44704 * 20 5 4 42 42 H 1.08003 * 120.15576 * 2.47434 * 22 21 20 43 43 H 1.08003 * 120.02497 * 180.73207 * 23 22 21 44 44 H 1.08002 * 119.81918 * 179.06088 * 24 23 22 45 45 H 1.07997 * 120.06582 * 179.42927 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8913 1.0284 0.0000 4 6 2.0344 -0.7119 -1.2469 5 7 3.4970 -0.7065 -1.3043 6 16 4.2687 0.0898 -2.5341 7 8 3.3493 1.0985 -2.9298 8 8 5.5377 0.4274 -1.9911 9 6 4.4462 -1.1570 -3.8397 10 6 5.1545 -0.5359 -5.0453 11 6 5.3048 -1.5877 -6.1462 12 6 6.0019 -0.9757 -7.3338 13 1 6.3076 0.0598 -7.3061 14 6 6.2504 -1.7380 -8.4555 15 7 5.8786 -2.9991 -8.4892 16 14 7.1138 -0.9792 -9.9279 17 1 8.4567 -0.4948 -9.5188 18 1 7.2609 -2.0004 -10.9960 19 1 6.3110 0.1606 -10.4394 20 6 4.2836 -1.4021 -0.2807 21 6 4.3700 -0.5215 0.9507 22 6 5.5820 -0.0347 1.3853 23 6 5.6410 0.7251 2.5412 24 6 4.4873 0.9787 3.2603 25 6 3.2715 0.4891 2.8247 26 6 3.2034 -0.2473 1.6493 27 8 2.0049 -0.6674 1.1752 28 1 -0.3633 -1.0277 -0.0048 29 1 -0.3633 0.5095 0.8925 30 1 -0.3634 0.5181 -0.8874 31 1 1.6403 -0.2086 -2.1297 32 1 1.6810 -1.7430 -1.2372 33 1 5.0347 -1.9945 -3.4648 34 1 3.4602 -1.5116 -4.1400 35 1 4.5663 0.3017 -5.4204 36 1 6.1406 -0.1817 -4.7446 37 1 5.8931 -2.4250 -5.7709 38 1 4.3189 -1.9422 -6.4470 39 1 6.0531 -3.5352 -9.2785 40 1 5.2861 -1.5981 -0.6608 41 1 3.7999 -2.3442 -0.0228 42 1 6.4825 -0.2442 0.8272 43 1 6.5872 1.1197 2.8808 44 1 4.5380 1.5589 4.1699 45 1 2.3749 0.6822 3.3949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292136000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:07 Heat of formation + Delta-G solvation = -90.203549 kcal Electronic energy + Delta-G solvation = -27829.023881 eV Core-core repulsion = 23938.662696 eV Total energy + Delta-G solvation = -3890.361185 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.70494 -37.96115 -37.00766 -36.25971 -35.74015 -34.70602 -33.18739 -32.21593 -31.33826 -29.60075 -27.84788 -27.23741 -25.27708 -23.69667 -22.92326 -21.90926 -21.29651 -20.60359 -19.06534 -18.31863 -17.53681 -16.71686 -16.64989 -16.23598 -15.75563 -15.72804 -15.26328 -15.14746 -14.56620 -14.48332 -14.27417 -14.08391 -13.74922 -13.17503 -12.85819 -12.72509 -12.59736 -12.57364 -12.32561 -12.30843 -12.06664 -11.99565 -11.92596 -11.82721 -11.64237 -11.36872 -11.26568 -11.05261 -10.91865 -10.90292 -10.46107 -10.27671 -9.98671 -9.58401 -9.30238 -9.12603 -8.98804 -8.68840 -8.42776 -6.07883 -4.11259 0.31583 0.97272 1.15600 2.63490 3.14009 3.30517 3.34519 3.37592 3.76407 3.94031 4.19070 4.39720 4.44012 4.46593 4.60885 4.68406 4.76813 4.85207 4.93167 5.03275 5.10841 5.11842 5.20004 5.23495 5.28445 5.33510 5.37873 5.45767 5.56941 5.60975 5.72233 5.80817 5.83676 5.89171 6.13797 6.19443 6.28906 6.34466 6.37679 6.40064 6.55002 6.82846 7.31609 7.53648 7.63432 7.89760 8.29988 8.94709 9.53560 11.03292 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020683 B = 0.002682 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.469049 B =10436.037103 C =11159.265092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.079 3.921 3 H 0.070 0.930 4 C 0.094 3.906 5 N -1.000 6.000 6 S 2.590 3.410 7 O -0.959 6.959 8 O -0.953 6.953 9 C -0.607 4.607 10 C -0.106 4.106 11 C 0.032 3.968 12 C -0.528 4.528 13 H 0.058 0.942 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.895 3.105 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.167 3.833 21 C -0.136 4.136 22 C -0.079 4.079 23 C -0.131 4.131 24 C -0.104 4.104 25 C -0.140 4.140 26 C 0.110 3.890 27 O -0.324 6.324 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.021 0.979 38 H 0.020 0.980 39 H 0.262 0.738 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.135 0.865 43 H 0.126 0.874 44 H 0.125 0.875 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.269 3.743 23.658 25.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.021 3.979 3 H 0.089 0.911 4 C -0.032 4.032 5 N -0.834 5.834 6 S 2.688 3.312 7 O -0.949 6.949 8 O -0.943 6.943 9 C -0.739 4.739 10 C -0.145 4.145 11 C -0.007 4.007 12 C -0.566 4.566 13 H 0.076 0.924 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.722 3.278 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 C 0.042 3.958 21 C -0.139 4.139 22 C -0.098 4.098 23 C -0.149 4.149 24 C -0.123 4.123 25 C -0.159 4.159 26 C 0.066 3.934 27 O -0.241 6.241 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.123 0.877 32 H 0.100 0.900 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.072 0.928 40 H 0.115 0.885 41 H 0.111 0.889 42 H 0.153 0.847 43 H 0.144 0.856 44 H 0.143 0.857 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.152 4.333 23.643 25.382 hybrid contribution 0.472 -0.260 -1.102 1.226 sum -7.680 4.073 22.542 24.160 Atomic orbital electron populations 1.21836 0.91930 1.03530 1.03265 1.22619 0.95258 0.96059 0.83916 0.91140 1.21744 0.79416 1.02657 0.99389 1.57725 1.13995 1.71336 1.40384 1.05762 0.73975 0.76384 0.75097 1.93555 1.63736 1.54473 1.83179 1.93563 1.42118 1.82095 1.76524 1.30589 1.10752 1.17127 1.15412 1.21514 0.98659 1.00825 0.93527 1.19054 0.97526 0.92907 0.91195 1.21211 1.38346 0.97449 0.99605 0.92419 1.25019 0.95744 0.94849 0.98727 1.69947 1.47046 1.06881 1.29545 0.86610 0.80212 0.78908 0.82029 1.20100 1.21216 1.20096 1.20357 0.96404 0.93994 0.85087 1.20767 0.93536 1.01269 0.98293 1.21000 0.97225 0.95921 0.95623 1.21252 0.98616 0.99448 0.95624 1.21033 0.92071 0.99363 0.99805 1.21245 0.98781 0.97982 0.97881 1.18528 0.84894 0.96067 0.93952 1.86081 1.33086 1.60663 1.44221 0.91199 0.91397 0.90126 0.87660 0.89968 0.85364 0.85395 0.91618 0.91570 0.96100 0.96115 0.92805 0.88506 0.88915 0.84732 0.85569 0.85682 0.85498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.55 37.16 0.35 -0.74 16 2 C 0.08 0.81 3.13 -27.15 -0.08 0.72 16 3 H 0.07 0.81 7.87 -51.93 -0.41 0.40 16 4 C 0.09 0.96 5.41 -4.53 -0.02 0.94 16 5 N -1.00 -11.94 2.93 -115.60 -0.34 -12.28 16 6 S 2.59 38.58 5.34 -107.50 -0.57 38.01 16 7 O -0.96 -16.59 16.59 -57.54 -0.95 -17.55 16 8 O -0.95 -16.28 16.87 -57.54 -0.97 -17.25 16 9 C -0.61 -9.24 6.18 37.16 0.23 -9.01 16 10 C -0.11 -2.13 5.16 -26.73 -0.14 -2.26 16 11 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 12 C -0.53 -14.80 9.11 -34.44 -0.31 -15.11 16 13 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 16 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 C 0.17 1.83 5.45 -4.66 -0.03 1.81 16 21 C -0.14 -1.63 5.49 -104.20 -0.57 -2.20 16 22 C -0.08 -0.89 9.71 -39.72 -0.39 -1.28 16 23 C -0.13 -1.28 10.06 -39.49 -0.40 -1.68 16 24 C -0.10 -0.96 10.02 -39.61 -0.40 -1.36 16 25 C -0.14 -1.44 10.00 -39.39 -0.39 -1.83 16 26 C 0.11 1.30 5.61 -39.17 -0.22 1.08 16 27 O -0.32 -3.69 9.54 -18.39 -0.18 -3.87 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.11 1.04 6.91 -51.93 -0.36 0.68 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.13 1.73 8.14 -51.92 -0.42 1.31 16 34 H 0.13 1.73 8.14 -51.92 -0.42 1.31 16 35 H 0.07 1.30 8.14 -51.92 -0.42 0.87 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.10 0.98 7.24 -51.93 -0.38 0.60 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.13 1.43 8.01 -52.48 -0.42 1.01 16 43 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 44 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 45 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 380.53 15.07 5.73 5.73 Total: -1.00 -34.69 380.53 -11.19 -45.88 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -7.02 Total: -0.68 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: -2.60 Total: -28.74 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.40 Total: -38.00 kcal Atomic # 8 Polarization: -36.57 SS G_CDS: -2.10 Total: -38.67 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 38.58 SS G_CDS: -0.57 Total: 38.01 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.69 -11.19 -45.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292136000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.322 kcal (2) G-P(sol) polarization free energy of solvation -34.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds