Wall clock time and date at job start Sat Apr 11 2020 05:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.35598 * 2 1 4 4 C 1.52184 * 109.35642 * 240.27483 * 2 1 3 5 5 N 1.46375 * 111.20001 * 178.60699 * 4 2 1 6 6 S 1.65596 * 119.77517 * 243.71382 * 5 4 2 7 7 O 1.42100 * 104.27647 * 26.09414 * 6 5 4 8 8 O 1.42093 * 104.27822 * 153.95668 * 6 5 4 9 9 C 1.81406 * 104.45030 * 270.02953 * 6 5 4 10 10 C 1.53000 * 109.47209 * 180.02562 * 9 6 5 11 11 C 1.53000 * 109.47169 * 179.97438 * 10 9 6 12 12 C 1.50699 * 109.46900 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00456 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99622 * 179.97438 * 12 11 10 15 15 N 1.31520 * 120.00318 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99834 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47098 * 60.00506 * 16 14 12 18 18 H 1.48501 * 109.47226 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47491 * 300.00323 * 16 14 12 20 20 C 1.46642 * 120.45339 * 63.74277 * 5 4 2 21 21 C 1.51631 * 108.78634 * 279.59162 * 20 5 4 22 22 C 1.37646 * 120.79878 * 243.71879 * 21 20 5 23 23 C 1.38444 * 119.68542 * 182.45488 * 22 21 20 24 24 C 1.38293 * 119.94957 * 0.70899 * 23 22 21 25 25 C 1.38111 * 120.35457 * 359.34554 * 24 23 22 26 26 C 1.38715 * 118.41198 * 65.40715 * 21 20 5 27 27 O 1.35566 * 120.40989 * 354.63915 * 26 21 20 28 28 H 1.09000 * 109.47031 * 179.73174 * 1 2 3 29 29 H 1.09005 * 109.46746 * 299.72019 * 1 2 3 30 30 H 1.08994 * 109.47492 * 59.72362 * 1 2 3 31 31 H 1.08999 * 109.13148 * 58.16314 * 4 2 1 32 32 H 1.08995 * 109.13315 * 299.05531 * 4 2 1 33 33 H 1.09003 * 109.47004 * 299.99991 * 9 6 5 34 34 H 1.08999 * 109.47292 * 59.99266 * 9 6 5 35 35 H 1.09007 * 109.46651 * 299.99594 * 10 9 6 36 36 H 1.08999 * 109.47284 * 59.99784 * 10 9 6 37 37 H 1.08994 * 109.47322 * 299.99807 * 11 10 9 38 38 H 1.08999 * 109.46949 * 59.99879 * 11 10 9 39 39 H 0.96997 * 119.99776 * 179.97438 * 15 14 12 40 40 H 1.08998 * 109.58546 * 159.79819 * 20 5 4 41 41 H 1.09001 * 109.69738 * 39.44704 * 20 5 4 42 42 H 1.08003 * 120.15576 * 2.47434 * 22 21 20 43 43 H 1.08003 * 120.02497 * 180.73207 * 23 22 21 44 44 H 1.08002 * 119.81918 * 179.06088 * 24 23 22 45 45 H 1.07997 * 120.06582 * 179.42927 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8913 1.0284 0.0000 4 6 2.0344 -0.7119 -1.2469 5 7 3.4970 -0.7065 -1.3043 6 16 4.2687 0.0898 -2.5341 7 8 3.3493 1.0985 -2.9298 8 8 5.5377 0.4274 -1.9911 9 6 4.4462 -1.1570 -3.8397 10 6 5.1545 -0.5359 -5.0453 11 6 5.3048 -1.5877 -6.1462 12 6 6.0019 -0.9757 -7.3338 13 1 6.3076 0.0598 -7.3061 14 6 6.2504 -1.7380 -8.4555 15 7 5.8786 -2.9991 -8.4892 16 14 7.1138 -0.9792 -9.9279 17 1 8.4567 -0.4948 -9.5188 18 1 7.2609 -2.0004 -10.9960 19 1 6.3110 0.1606 -10.4394 20 6 4.2836 -1.4021 -0.2807 21 6 4.3700 -0.5215 0.9507 22 6 5.5820 -0.0347 1.3853 23 6 5.6410 0.7251 2.5412 24 6 4.4873 0.9787 3.2603 25 6 3.2715 0.4891 2.8247 26 6 3.2034 -0.2473 1.6493 27 8 2.0049 -0.6674 1.1752 28 1 -0.3633 -1.0277 -0.0048 29 1 -0.3633 0.5095 0.8925 30 1 -0.3634 0.5181 -0.8874 31 1 1.6403 -0.2086 -2.1297 32 1 1.6810 -1.7430 -1.2372 33 1 5.0347 -1.9945 -3.4648 34 1 3.4602 -1.5116 -4.1400 35 1 4.5663 0.3017 -5.4204 36 1 6.1406 -0.1817 -4.7446 37 1 5.8931 -2.4250 -5.7709 38 1 4.3189 -1.9422 -6.4470 39 1 6.0531 -3.5352 -9.2785 40 1 5.2861 -1.5981 -0.6608 41 1 3.7999 -2.3442 -0.0228 42 1 6.4825 -0.2442 0.8272 43 1 6.5872 1.1197 2.8808 44 1 4.5380 1.5589 4.1699 45 1 2.3749 0.6822 3.3949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292136000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:07 Heat of formation + Delta-G solvation = -112.228195 kcal Electronic energy + Delta-G solvation = -27829.978941 eV Core-core repulsion = 23938.662696 eV Total energy + Delta-G solvation = -3891.316245 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.50085 -38.77125 -38.24980 -37.25500 -36.93545 -36.48797 -34.18514 -33.92971 -32.12925 -30.36465 -29.67781 -28.01767 -26.17583 -25.51678 -23.70355 -22.76286 -22.34101 -22.04821 -20.12762 -19.30613 -18.59771 -18.52098 -17.66180 -17.36509 -16.89467 -16.67015 -16.51473 -16.28718 -16.03349 -15.62271 -15.29449 -14.94292 -14.56190 -14.50243 -14.11823 -13.94208 -13.63886 -13.59269 -13.54317 -13.29005 -13.26402 -13.23533 -13.00648 -12.90399 -12.74657 -12.71199 -12.67262 -12.52831 -12.22023 -12.15222 -11.84604 -11.77941 -11.40858 -11.13986 -11.06701 -10.58239 -10.16012 -9.85153 -9.48251 -8.23753 -6.35028 -0.88530 0.17724 0.36186 1.39681 1.42084 1.50077 1.57822 2.36801 2.39043 2.73339 2.97159 3.05846 3.09807 3.52248 3.66683 3.76062 3.81866 3.86674 3.93445 4.05682 4.14634 4.19036 4.30174 4.35287 4.45868 4.53400 4.55248 4.60390 4.67427 4.72492 4.82090 4.91815 4.95695 4.99367 5.03109 5.09227 5.24905 5.38469 5.43329 5.44844 5.52857 5.56629 5.60718 5.77737 5.80969 6.18006 6.51146 6.80326 7.34396 8.87537 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020683 B = 0.002682 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.469049 B =10436.037103 C =11159.265092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.076 3.924 3 H 0.051 0.949 4 C 0.084 3.916 5 N -0.992 5.992 6 S 2.613 3.387 7 O -0.984 6.984 8 O -0.976 6.976 9 C -0.606 4.606 10 C -0.106 4.106 11 C 0.032 3.968 12 C -0.554 4.554 13 H 0.060 0.940 14 C 0.004 3.996 15 N -0.930 5.930 16 Si 0.962 3.038 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.267 1.267 20 C 0.160 3.840 21 C -0.156 4.156 22 C -0.098 4.098 23 C -0.136 4.136 24 C -0.103 4.103 25 C -0.148 4.148 26 C 0.090 3.910 27 O -0.328 6.328 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.003 0.997 38 H 0.004 0.996 39 H 0.265 0.735 40 H 0.101 0.899 41 H 0.111 0.889 42 H 0.134 0.866 43 H 0.148 0.852 44 H 0.154 0.846 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.674 4.195 24.654 26.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.019 3.981 3 H 0.069 0.931 4 C -0.041 4.041 5 N -0.828 5.828 6 S 2.711 3.289 7 O -0.974 6.974 8 O -0.966 6.966 9 C -0.737 4.737 10 C -0.145 4.145 11 C -0.006 4.006 12 C -0.592 4.592 13 H 0.078 0.922 14 C -0.195 4.195 15 N -0.569 5.569 16 Si 0.786 3.214 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.192 1.192 20 C 0.036 3.964 21 C -0.158 4.158 22 C -0.117 4.117 23 C -0.154 4.154 24 C -0.121 4.121 25 C -0.166 4.166 26 C 0.046 3.954 27 O -0.245 6.245 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.164 0.836 34 H 0.164 0.836 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.074 0.926 40 H 0.120 0.880 41 H 0.129 0.871 42 H 0.152 0.848 43 H 0.166 0.834 44 H 0.172 0.828 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.556 4.793 24.636 26.516 hybrid contribution 0.575 -0.410 -1.310 1.488 sum -7.981 4.383 23.326 25.040 Atomic orbital electron populations 1.21847 0.89741 1.04457 1.04031 1.22722 0.96889 0.94881 0.83623 0.93067 1.22029 0.78171 1.04273 0.99655 1.57443 1.14833 1.71158 1.39413 1.04874 0.73199 0.75875 0.75001 1.93517 1.64311 1.55749 1.83862 1.93527 1.43575 1.82598 1.76949 1.30534 1.11545 1.17770 1.13813 1.21321 0.99533 0.99605 0.94049 1.18947 0.95838 0.93621 0.92195 1.21710 1.38707 0.97850 1.00972 0.92175 1.25930 0.96427 0.95301 1.01826 1.70062 1.48130 1.08205 1.30533 0.85543 0.79259 0.78262 0.78290 1.19224 1.20579 1.19194 1.20568 0.96803 0.94459 0.84589 1.20925 0.93964 1.02035 0.98866 1.21190 0.97182 0.96747 0.96575 1.21576 0.99941 0.98807 0.95047 1.21394 0.91361 0.98809 1.00490 1.21529 0.99928 0.97604 0.97561 1.18776 0.84972 0.96914 0.94718 1.86074 1.32960 1.60946 1.44542 0.90163 0.90949 0.89066 0.87356 0.87562 0.83585 0.83558 0.91624 0.91567 0.97826 0.97809 0.92583 0.88038 0.87145 0.84816 0.83449 0.82789 0.84044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.55 71.98 0.69 -1.18 16 2 C 0.08 1.48 3.13 30.32 0.09 1.57 16 3 H 0.05 1.17 7.87 -2.39 -0.02 1.15 16 4 C 0.08 1.60 5.41 86.13 0.47 2.06 16 5 N -0.99 -22.72 2.93 -519.66 -1.52 -24.24 16 6 S 2.61 76.55 5.34 -56.49 -0.30 76.25 16 7 O -0.98 -33.75 16.59 -127.65 -2.12 -35.86 16 8 O -0.98 -33.25 16.87 -127.65 -2.15 -35.40 16 9 C -0.61 -18.03 6.18 71.98 0.44 -17.59 16 10 C -0.11 -4.28 5.16 30.59 0.16 -4.12 16 11 C 0.03 1.65 4.97 29.85 0.15 1.80 16 12 C -0.55 -31.44 9.11 25.60 0.23 -31.20 16 13 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 14 C 0.00 0.20 5.46 84.65 0.46 0.66 16 15 N -0.93 -55.53 13.29 21.45 0.28 -55.24 16 16 Si 0.96 43.96 29.54 68.60 2.03 45.98 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 18 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 20 C 0.16 3.38 5.45 85.90 0.47 3.85 16 21 C -0.16 -3.63 5.49 -19.59 -0.11 -3.74 16 22 C -0.10 -2.18 9.71 22.18 0.22 -1.96 16 23 C -0.14 -2.47 10.06 22.33 0.22 -2.24 16 24 C -0.10 -1.69 10.02 22.25 0.22 -1.46 16 25 C -0.15 -2.83 10.00 22.39 0.22 -2.61 16 26 C 0.09 2.06 5.61 22.54 0.13 2.18 16 27 O -0.33 -7.12 9.54 -88.73 -0.85 -7.96 16 28 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.88 8.14 -2.38 -0.02 0.87 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.11 2.00 6.91 -2.39 -0.02 1.98 16 32 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.15 3.80 8.14 -2.39 -0.02 3.78 16 34 H 0.15 3.79 8.14 -2.39 -0.02 3.77 16 35 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 36 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 39 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 40 H 0.10 1.99 7.24 -2.39 -0.02 1.98 16 41 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.13 2.85 8.01 -2.91 -0.02 2.83 16 43 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 44 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 45 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -74.64 380.53 0.41 -74.23 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.97 Total: 16.23 kcal Atomic # 6 Polarization: -58.05 SS G_CDS: 4.07 Total: -53.98 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -1.24 Total: -79.48 kcal Atomic # 8 Polarization: -74.11 SS G_CDS: -5.12 Total: -79.23 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: 76.55 SS G_CDS: -0.30 Total: 76.25 kcal Total: -74.64 0.41 -74.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292136000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.996 kcal (2) G-P(sol) polarization free energy of solvation -74.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds