Wall clock time and date at job start Sat Apr 11 2020 05:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47040 * 2 1 4 4 C 1.50695 * 109.47305 * 239.99552 * 2 1 3 5 5 C 1.38242 * 119.99848 * 114.96136 * 4 2 1 6 6 C 1.38237 * 119.99835 * 180.02562 * 5 4 2 7 7 C 1.38236 * 120.00033 * 359.97438 * 6 5 4 8 8 S 1.76200 * 120.00128 * 179.97438 * 7 6 5 9 9 C 1.81405 * 104.44863 * 89.99810 * 8 7 6 10 10 O 1.42099 * 104.27655 * 333.92817 * 8 7 6 11 11 O 1.42100 * 104.27892 * 206.07031 * 8 7 6 12 12 C 1.38237 * 119.99824 * 0.25612 * 7 6 5 13 13 C 1.38235 * 120.00324 * 359.49346 * 12 7 6 14 14 N 1.46498 * 109.47055 * 119.99389 * 2 1 3 15 15 C 1.46502 * 119.99992 * 53.96693 * 14 2 1 16 16 C 1.34775 * 120.00279 * 233.96208 * 14 2 1 17 17 O 1.21275 * 120.00126 * 0.02562 * 16 14 2 18 18 C 1.50702 * 120.00196 * 179.97438 * 16 14 2 19 19 C 1.52994 * 109.47155 * 180.02562 * 18 16 14 20 20 C 1.50702 * 109.47155 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99951 * 0.02562 * 20 19 18 22 22 C 1.37870 * 120.00155 * 179.97438 * 20 19 18 23 23 N 1.31522 * 120.00040 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 120.00263 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47067 * 89.99679 * 24 22 20 26 26 H 1.48493 * 109.47519 * 209.99748 * 24 22 20 27 27 H 1.48510 * 109.47210 * 330.00091 * 24 22 20 28 28 H 1.08995 * 109.47323 * 300.00474 * 1 2 3 29 29 H 1.09004 * 109.46947 * 60.00364 * 1 2 3 30 30 H 1.09000 * 109.47040 * 180.02562 * 1 2 3 31 31 H 1.07991 * 120.00119 * 359.97438 * 5 4 2 32 32 H 1.08000 * 119.99739 * 179.97438 * 6 5 4 33 33 H 1.08992 * 109.47326 * 299.99712 * 9 8 7 34 34 H 1.09001 * 109.46816 * 180.02562 * 9 8 7 35 35 H 1.08993 * 109.47132 * 60.00396 * 9 8 7 36 36 H 1.08008 * 119.99443 * 179.73087 * 12 7 6 37 37 H 1.07993 * 120.00106 * 180.23002 * 13 12 7 38 38 H 1.08997 * 109.47531 * 87.76467 * 15 14 2 39 39 H 1.08994 * 109.47480 * 207.77252 * 15 14 2 40 40 H 1.09006 * 109.46985 * 327.77247 * 15 14 2 41 41 H 1.09000 * 109.47286 * 300.00339 * 18 16 14 42 42 H 1.09002 * 109.46939 * 60.00187 * 18 16 14 43 43 H 1.09000 * 109.47197 * 300.00267 * 19 18 16 44 44 H 1.09002 * 109.47148 * 60.00188 * 19 18 16 45 45 H 0.97003 * 119.99561 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 6 2.7391 -0.0122 -2.1916 6 6 3.1995 -0.6638 -3.3205 7 6 2.9536 -2.0138 -3.4879 8 16 3.5398 -2.8442 -4.9271 9 6 5.1927 -3.4340 -4.4677 10 8 3.6305 -1.8214 -5.9094 11 8 2.6472 -3.9380 -5.0886 12 6 2.2428 -2.7109 -2.5289 13 6 1.7868 -2.0605 -1.3976 14 7 2.0183 -0.6905 1.1962 15 6 1.5588 -2.0487 1.4969 16 6 2.8904 -0.0763 2.0201 17 8 3.2705 1.0482 1.7715 18 6 3.3922 -0.7864 3.2510 19 6 4.3619 0.1250 4.0058 20 6 4.8633 -0.5848 5.2370 21 1 4.5245 -1.5861 5.4587 22 6 5.7553 0.0435 6.0799 23 7 6.1932 -0.5762 7.1541 24 14 6.3418 1.7750 5.6962 25 1 5.4297 2.7590 6.3326 26 1 7.7169 1.9605 6.2252 27 1 6.3450 1.9821 4.2256 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 2.9309 1.0425 -2.0610 32 1 3.7513 -0.1181 -4.0716 33 1 5.8216 -2.5837 -4.2041 34 1 5.6357 -3.9658 -5.3098 35 1 5.1141 -4.1065 -3.6136 36 1 2.0469 -3.7648 -2.6619 37 1 1.2347 -2.6060 -0.6467 38 1 2.2050 -2.7700 0.9968 39 1 1.5944 -2.2143 2.5736 40 1 0.5350 -2.1723 1.1439 41 1 2.5496 -1.0340 3.8966 42 1 3.9067 -1.7016 2.9580 43 1 5.2045 0.3730 3.3604 44 1 3.8471 1.0400 4.2988 45 1 6.8205 -0.1339 7.7473 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292629817.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:12 Heat of formation + Delta-G solvation = -104.321411 kcal Electronic energy + Delta-G solvation = -27064.450789 eV Core-core repulsion = 23173.477407 eV Total energy + Delta-G solvation = -3890.973382 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.49368 -40.10062 -38.14534 -37.29237 -36.96281 -35.60016 -33.98959 -32.91186 -32.10639 -30.72828 -30.17630 -28.16934 -27.94117 -25.12601 -23.87611 -23.49008 -21.80371 -20.13093 -20.01600 -19.15996 -18.78233 -17.97388 -17.44400 -17.12833 -16.99236 -16.80910 -16.28716 -16.05847 -15.71923 -15.62205 -14.95086 -14.88626 -14.62223 -14.57067 -14.22674 -14.13158 -13.95825 -13.76481 -13.64458 -13.49344 -13.28151 -13.14848 -13.14175 -13.01373 -12.93788 -12.84811 -12.30914 -12.13651 -12.03395 -11.99769 -11.95088 -11.77291 -11.60064 -11.40204 -10.79001 -10.77801 -10.20721 -10.05202 -9.73609 -8.32392 -6.35081 -0.86897 -0.25693 0.28546 1.31869 1.34194 1.48643 1.61417 1.89587 1.95387 2.33815 2.46943 3.02204 3.03405 3.18394 3.45613 3.68896 3.79374 3.91632 4.06927 4.09985 4.15993 4.21705 4.28018 4.30545 4.35558 4.43401 4.49287 4.64891 4.67352 4.73095 4.80263 4.87466 4.96652 4.97470 5.00737 5.05795 5.10387 5.20688 5.31422 5.38570 5.42590 5.59081 5.60189 5.80744 6.21844 6.32162 6.71200 7.17739 7.30448 8.83154 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015458 B = 0.002508 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.937922 B =11161.609730 C =11806.792590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.164 3.836 3 H 0.086 0.914 4 C -0.047 4.047 5 C -0.144 4.144 6 C -0.033 4.033 7 C -0.665 4.665 8 S 2.513 3.487 9 C -0.630 4.630 10 O -0.977 6.977 11 O -0.972 6.972 12 C -0.031 4.031 13 C -0.136 4.136 14 N -0.606 5.606 15 C 0.056 3.944 16 C 0.514 3.486 17 O -0.584 6.584 18 C -0.112 4.112 19 C 0.006 3.994 20 C -0.527 4.527 21 H 0.052 0.948 22 C 0.015 3.985 23 N -0.943 5.943 24 Si 0.936 3.064 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.263 1.263 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.132 0.868 32 H 0.152 0.848 33 H 0.147 0.853 34 H 0.154 0.846 35 H 0.152 0.848 36 H 0.162 0.838 37 H 0.159 0.841 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.007 0.993 44 H 0.007 0.993 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.829 -7.628 -24.821 27.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.060 3.940 3 H 0.104 0.896 4 C -0.049 4.049 5 C -0.163 4.163 6 C -0.052 4.052 7 C -0.752 4.752 8 S 2.697 3.303 9 C -0.784 4.784 10 O -0.975 6.975 11 O -0.969 6.969 12 C -0.050 4.050 13 C -0.155 4.155 14 N -0.339 5.339 15 C -0.085 4.085 16 C 0.304 3.696 17 O -0.464 6.464 18 C -0.151 4.151 19 C -0.032 4.032 20 C -0.565 4.565 21 H 0.070 0.930 22 C -0.183 4.183 23 N -0.583 5.583 24 Si 0.761 3.239 25 H -0.194 1.194 26 H -0.204 1.204 27 H -0.187 1.187 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.150 0.850 32 H 0.170 0.830 33 H 0.165 0.835 34 H 0.172 0.828 35 H 0.170 0.830 36 H 0.180 0.820 37 H 0.177 0.823 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.118 0.882 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.011 -7.113 -25.563 28.360 hybrid contribution 0.852 1.188 1.148 1.858 sum -9.159 -5.926 -24.415 26.742 Atomic orbital electron populations 1.22109 0.91272 1.04184 1.03285 1.20077 0.96117 0.96394 0.81384 0.89616 1.20567 0.94489 0.95144 0.94664 1.21396 0.99107 1.01125 0.94707 1.21103 0.94976 0.92731 0.96355 1.30683 1.16445 1.06031 1.21992 1.04641 0.78408 0.73665 0.73636 1.30072 1.19088 1.14502 1.14718 1.93536 1.87992 1.58374 1.57575 1.93537 1.63300 1.54769 1.85304 1.21255 0.91678 1.00994 0.91034 1.21640 1.01290 0.93797 0.98767 1.47984 1.44757 1.17653 1.23488 1.22339 1.01729 0.80984 1.03456 1.21300 0.77558 0.85851 0.84883 1.90620 1.59135 1.21247 1.75439 1.21508 1.00644 0.99811 0.93185 1.19222 0.94735 0.95146 0.94122 1.21410 1.25767 1.02246 1.07084 0.92975 1.25776 0.96185 1.01690 0.94658 1.70022 1.33812 1.39729 1.14758 0.85860 0.77997 0.80724 0.79312 1.19414 1.20361 1.18716 0.91787 0.90235 0.89744 0.85005 0.83036 0.83452 0.82829 0.82974 0.82046 0.82328 0.90861 0.89709 0.87957 0.87790 0.88164 0.97440 0.97444 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.89 71.98 0.64 -1.67 16 2 C 0.16 3.55 2.95 44.24 0.13 3.68 16 3 H 0.09 2.33 6.67 -2.39 -0.02 2.31 16 4 C -0.05 -0.94 4.96 -19.87 -0.10 -1.04 16 5 C -0.14 -2.95 9.67 22.27 0.22 -2.74 16 6 C -0.03 -0.60 9.47 22.27 0.21 -0.39 16 7 C -0.67 -10.72 5.66 22.27 0.13 -10.59 16 8 S 2.51 33.74 5.80 -56.49 -0.33 33.41 16 9 C -0.63 -2.93 10.80 113.37 1.22 -1.70 16 10 O -0.98 -20.13 17.13 -127.65 -2.19 -22.32 16 11 O -0.97 -18.80 17.12 -127.65 -2.19 -20.99 16 12 C -0.03 -0.47 9.47 22.27 0.21 -0.26 16 13 C -0.14 -2.16 8.13 22.27 0.18 -1.98 16 14 N -0.61 -14.61 2.75 -826.81 -2.28 -16.88 16 15 C 0.06 0.86 8.17 127.77 1.04 1.91 16 16 C 0.51 17.76 7.67 87.66 0.67 18.43 16 17 O -0.58 -25.22 15.32 -3.02 -0.05 -25.26 16 18 C -0.11 -4.10 4.16 29.85 0.12 -3.98 16 19 C 0.01 0.28 3.33 29.85 0.10 0.38 16 20 C -0.53 -29.88 9.66 25.60 0.25 -29.63 16 21 H 0.05 3.09 7.99 -2.91 -0.02 3.07 16 22 C 0.01 0.86 5.47 84.65 0.46 1.33 16 23 N -0.94 -58.30 13.96 21.45 0.30 -58.00 16 24 Si 0.94 46.31 27.47 68.60 1.88 48.20 16 25 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 26 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 27 H -0.26 -12.96 6.54 99.48 0.65 -12.31 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 29 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.08 0.93 6.08 -2.39 -0.01 0.91 16 31 H 0.13 2.61 7.95 -2.92 -0.02 2.59 16 32 H 0.15 2.28 7.57 -2.91 -0.02 2.26 16 33 H 0.15 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.15 0.17 8.14 -2.39 -0.02 0.15 16 35 H 0.15 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.16 1.72 7.57 -2.91 -0.02 1.69 16 37 H 0.16 1.69 4.96 -2.91 -0.01 1.68 16 38 H 0.07 0.95 6.97 -2.39 -0.02 0.94 16 39 H 0.08 1.33 6.36 -2.39 -0.02 1.32 16 40 H 0.10 0.95 5.54 -2.38 -0.01 0.94 16 41 H 0.10 3.42 7.41 -2.39 -0.02 3.40 16 42 H 0.10 3.35 8.11 -2.39 -0.02 3.33 16 43 H 0.01 0.38 7.16 -2.39 -0.02 0.36 16 44 H 0.01 0.37 7.53 -2.39 -0.02 0.35 16 45 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -85.95 375.64 1.60 -84.36 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: 0.94 Total: 5.74 kcal Atomic # 6 Polarization: -33.74 SS G_CDS: 5.49 Total: -28.25 kcal Atomic # 7 Polarization: -72.91 SS G_CDS: -1.98 Total: -74.88 kcal Atomic # 8 Polarization: -64.15 SS G_CDS: -4.42 Total: -68.57 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.88 Total: 48.20 kcal Atomic # 16 Polarization: 33.74 SS G_CDS: -0.33 Total: 33.41 kcal Total: -85.95 1.60 -84.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292629817.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.966 kcal (2) G-P(sol) polarization free energy of solvation -85.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds