Wall clock time and date at job start Sat Apr 11 2020 05:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36002 * 116.99591 * 2 1 4 4 C 1.38722 * 120.14163 * 0.18763 * 3 2 1 5 5 C 1.37830 * 120.17154 * 180.28325 * 4 3 2 6 6 C 1.39643 * 120.35381 * 359.75732 * 5 4 3 7 7 C 1.38563 * 119.12600 * 0.02666 * 6 5 4 8 8 C 1.38197 * 120.51640 * 359.95501 * 7 6 5 9 9 C 1.51216 * 108.56536 * 179.97438 * 7 6 5 10 10 C 1.53734 * 104.58565 * 0.02562 * 9 7 6 11 11 N 1.39863 * 129.27061 * 179.97438 * 6 5 4 12 12 S 1.65596 * 124.97669 * 0.02821 * 11 6 5 13 13 O 1.42104 * 104.27864 * 26.06888 * 12 11 6 14 14 O 1.42099 * 104.27811 * 153.92586 * 12 11 6 15 15 C 1.81401 * 104.45029 * 269.99683 * 12 11 6 16 16 C 1.53004 * 109.47069 * 179.97438 * 15 12 11 17 17 C 1.53000 * 109.47300 * 300.00050 * 16 15 12 18 18 C 1.52999 * 109.46941 * 60.00550 * 16 15 12 19 19 C 1.50701 * 109.46670 * 179.97438 * 16 15 12 20 20 H 1.08001 * 120.00429 * 0.02562 * 19 16 15 21 21 C 1.37880 * 119.99476 * 179.97438 * 19 16 15 22 22 N 1.31511 * 120.00454 * 0.02562 * 21 19 16 23 23 Si 1.86806 * 119.99767 * 180.02562 * 21 19 16 24 24 H 1.48494 * 109.47443 * 89.99868 * 23 21 19 25 25 H 1.48504 * 109.46819 * 210.00411 * 23 21 19 26 26 H 1.48507 * 109.47016 * 329.99850 * 23 21 19 27 27 H 1.08996 * 109.47630 * 300.00206 * 1 2 3 28 28 H 1.08996 * 109.46752 * 60.00901 * 1 2 3 29 29 H 1.08998 * 109.46547 * 180.02562 * 1 2 3 30 30 H 1.07998 * 119.91353 * 0.04447 * 4 3 2 31 31 H 1.07995 * 119.82610 * 179.78643 * 5 4 3 32 32 H 1.08002 * 119.93909 * 179.97438 * 8 7 6 33 33 H 1.09002 * 110.41560 * 118.77558 * 9 7 6 34 34 H 1.09004 * 110.41688 * 241.22281 * 9 7 6 35 35 H 1.09000 * 110.30327 * 118.93025 * 10 9 7 36 36 H 1.09006 * 110.29634 * 241.07029 * 10 9 7 37 37 H 1.09003 * 109.47223 * 300.00236 * 15 12 11 38 38 H 1.09001 * 109.46736 * 60.00074 * 15 12 11 39 39 H 1.08999 * 109.46860 * 60.00317 * 17 16 15 40 40 H 1.08993 * 109.47092 * 180.02562 * 17 16 15 41 41 H 1.08997 * 109.46821 * 299.99843 * 17 16 15 42 42 H 1.08993 * 109.47806 * 59.99696 * 18 16 15 43 43 H 1.09003 * 109.46886 * 179.97438 * 18 16 15 44 44 H 1.08999 * 109.46693 * 299.99504 * 18 16 15 45 45 H 0.96999 * 120.00205 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2936 2.3771 0.0039 5 6 1.9186 3.6055 -0.0020 6 6 3.3126 3.6880 -0.0068 7 6 4.0574 2.5196 -0.0062 8 6 3.4306 1.2879 0.0001 9 6 5.5249 2.8841 -0.0127 10 6 5.5420 4.4214 -0.0165 11 7 4.1323 4.8212 -0.0135 12 16 3.5893 6.3856 -0.0167 13 8 2.3080 6.3131 0.5935 14 8 4.6452 7.1243 0.5823 15 6 3.4345 6.8076 -1.7741 16 6 2.9337 8.2468 -1.9109 17 6 1.5685 8.3784 -1.2327 18 6 3.9286 9.1986 -1.2437 19 6 2.8057 8.5974 -3.3709 20 1 3.0561 7.8667 -4.1258 21 6 2.3679 9.8508 -3.7430 22 7 2.0625 10.7404 -2.8239 23 14 2.2086 10.2853 -5.5529 24 1 0.8442 9.9403 -6.0266 25 1 2.4428 11.7404 -5.7350 26 1 3.2124 9.5206 -6.3357 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 0.2151 2.3215 0.0077 31 1 1.3271 4.5091 -0.0024 32 1 4.0203 0.3831 0.0001 33 1 6.0158 2.5011 0.8820 34 1 6.0092 2.4959 -0.9087 35 1 6.0441 4.7963 0.8754 36 1 6.0373 4.7917 -0.9141 37 1 4.4070 6.7134 -2.2574 38 1 2.7254 6.1297 -2.2493 39 1 1.6616 8.1249 -0.1766 40 1 1.2116 9.4035 -1.3305 41 1 0.8598 7.7003 -1.7081 42 1 4.9011 9.1049 -1.7268 43 1 3.5720 10.2240 -1.3415 44 1 4.0216 8.9450 -0.1877 45 1 1.7548 11.6223 -3.0857 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295828107.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:35 Heat of formation + Delta-G solvation = -71.955854 kcal Electronic energy + Delta-G solvation = -28410.343334 eV Core-core repulsion = 24520.773428 eV Total energy + Delta-G solvation = -3889.569906 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.68813 -38.97558 -36.82437 -36.37038 -35.52495 -35.39984 -32.34883 -31.72467 -29.50668 -28.93674 -27.06057 -26.69788 -25.79172 -25.28346 -23.26788 -22.54823 -21.29005 -19.56612 -18.90796 -17.75400 -17.60407 -16.58304 -16.17472 -16.10227 -15.75198 -15.58174 -15.09986 -15.00405 -14.79322 -14.21841 -13.75307 -13.39174 -13.16488 -13.11827 -12.82594 -12.75369 -12.58468 -12.40826 -12.27186 -12.15778 -11.97313 -11.74719 -11.57767 -11.49431 -11.17655 -11.12109 -11.01838 -10.79496 -10.62943 -10.45690 -10.35202 -10.18457 -9.95049 -9.72770 -9.54294 -8.89353 -8.78166 -8.45280 -7.53046 -6.08508 -4.20831 0.56902 1.24363 1.43888 2.81301 3.15254 3.22980 3.30380 3.32486 3.65784 4.19131 4.25947 4.29149 4.34330 4.65827 4.81405 4.93333 4.96391 4.98616 5.00629 5.16438 5.21290 5.24062 5.30291 5.50180 5.55075 5.56497 5.61828 5.77635 5.85054 5.89869 6.15604 6.28047 6.31912 6.40794 6.57689 6.62815 6.71768 6.76984 6.82237 6.96245 7.24098 7.33114 7.42985 7.62761 7.91497 8.02984 8.26447 8.77648 9.44925 10.92879 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015001 B = 0.003493 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.081610 B = 8013.000749 C = 8821.931222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.095 3.905 4 C -0.171 4.171 5 C -0.112 4.112 6 C 0.137 3.863 7 C -0.101 4.101 8 C -0.110 4.110 9 C -0.080 4.080 10 C 0.114 3.886 11 N -0.946 5.946 12 S 2.589 3.411 13 O -0.948 6.948 14 O -0.950 6.950 15 C -0.575 4.575 16 C 0.083 3.917 17 C -0.164 4.164 18 C -0.165 4.165 19 C -0.503 4.503 20 H 0.059 0.941 21 C 0.065 3.935 22 N -0.883 5.883 23 Si 0.897 3.103 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.274 1.274 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.097 0.903 30 H 0.134 0.866 31 H 0.150 0.850 32 H 0.131 0.869 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.027 0.973 40 H 0.096 0.904 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.097 0.903 44 H 0.026 0.974 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.134 -18.511 5.023 19.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.050 3.950 4 C -0.190 4.190 5 C -0.133 4.133 6 C 0.040 3.960 7 C -0.106 4.106 8 C -0.129 4.129 9 C -0.118 4.118 10 C -0.011 4.011 11 N -0.767 5.767 12 S 2.691 3.309 13 O -0.939 6.939 14 O -0.940 6.940 15 C -0.709 4.709 16 C 0.080 3.920 17 C -0.222 4.222 18 C -0.222 4.222 19 C -0.542 4.542 20 H 0.078 0.922 21 C -0.137 4.137 22 N -0.521 5.521 23 Si 0.724 3.276 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.199 1.199 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.115 0.885 30 H 0.152 0.848 31 H 0.168 0.832 32 H 0.149 0.851 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.046 0.954 40 H 0.115 0.885 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.115 0.885 44 H 0.045 0.955 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.049 -17.839 5.870 18.892 hybrid contribution -0.315 0.277 -1.682 1.733 sum 1.734 -17.562 4.188 18.138 Atomic orbital electron populations 1.23029 0.78558 1.03661 1.01514 1.86036 1.21175 1.26701 1.89464 1.18678 0.91953 0.84142 1.00275 1.20950 1.00102 0.91248 1.06677 1.20885 0.91502 0.99382 1.01562 1.17992 0.91174 0.86242 1.00556 1.19849 0.95288 0.91643 1.03823 1.19437 0.91141 0.96727 1.05630 1.21081 0.92740 0.94213 1.03747 1.21869 0.80680 0.95131 1.03396 1.56685 1.13014 1.22084 1.84958 1.06092 0.74175 0.70756 0.79882 1.93527 1.40922 1.84107 1.75335 1.93556 1.56791 1.67993 1.75710 1.30545 1.10168 1.10603 1.19583 1.17964 0.92381 0.83547 0.98076 1.22285 0.98282 1.05217 0.96404 1.22291 0.98370 1.05168 0.96404 1.20922 1.45160 0.98422 0.89725 0.92229 1.24936 0.94880 0.96195 0.97664 1.69792 1.44511 1.05551 1.32270 0.86518 0.78482 0.77664 0.84891 1.20589 1.21071 1.19911 0.92663 0.92597 0.88473 0.84820 0.83195 0.85099 0.89111 0.89000 0.89483 0.89973 0.86162 0.86098 0.95396 0.88495 0.94369 0.94355 0.88459 0.95478 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.82 101.05 0.99 1.20 16 2 O -0.32 -3.56 10.50 -19.75 -0.21 -3.77 16 3 C 0.10 1.18 6.69 -39.25 -0.26 0.92 16 4 C -0.17 -2.18 9.02 -39.55 -0.36 -2.54 16 5 C -0.11 -1.69 9.37 -39.21 -0.37 -2.06 16 6 C 0.14 2.08 6.60 -83.55 -0.55 1.53 16 7 C -0.10 -1.28 6.23 -104.26 -0.65 -1.93 16 8 C -0.11 -1.31 9.98 -39.45 -0.39 -1.70 16 9 C -0.08 -0.78 6.93 -27.25 -0.19 -0.97 16 10 C 0.11 1.37 7.08 -3.64 -0.03 1.34 16 11 N -0.95 -14.72 3.40 -58.07 -0.20 -14.91 16 12 S 2.59 49.15 4.59 -107.50 -0.49 48.66 16 13 O -0.95 -19.67 12.88 -57.54 -0.74 -20.41 16 14 O -0.95 -19.88 15.18 -57.54 -0.87 -20.75 16 15 C -0.57 -11.28 5.12 37.16 0.19 -11.09 16 16 C 0.08 1.98 0.52 -155.66 -0.08 1.90 16 17 C -0.16 -3.97 7.78 37.16 0.29 -3.68 16 18 C -0.16 -4.00 7.77 37.16 0.29 -3.72 16 19 C -0.50 -13.07 8.01 -34.44 -0.28 -13.34 16 20 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 21 C 0.07 1.72 5.15 -17.82 -0.09 1.62 16 22 N -0.88 -23.81 9.35 55.43 0.52 -23.30 16 23 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 28 H 0.06 0.39 7.68 -51.93 -0.40 -0.01 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.13 1.38 6.30 -52.49 -0.33 1.05 16 31 H 0.15 2.43 6.11 -52.49 -0.32 2.11 16 32 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.12 2.13 8.14 -51.92 -0.42 1.71 16 38 H 0.12 2.19 8.14 -51.92 -0.42 1.77 16 39 H 0.03 0.64 5.46 -51.93 -0.28 0.35 16 40 H 0.10 2.53 6.07 -51.93 -0.32 2.22 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.10 2.55 6.07 -51.93 -0.32 2.23 16 44 H 0.03 0.62 5.46 -51.93 -0.28 0.34 16 45 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 361.04 15.07 5.44 5.44 Total: -1.00 -31.80 361.04 -9.47 -41.27 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -6.41 Total: 4.88 kcal Atomic # 6 Polarization: -31.03 SS G_CDS: -1.48 Total: -32.51 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.32 Total: -38.21 kcal Atomic # 8 Polarization: -43.11 SS G_CDS: -1.82 Total: -44.93 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 49.15 SS G_CDS: -0.49 Total: 48.66 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.80 -9.47 -41.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295828107.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.686 kcal (2) G-P(sol) polarization free energy of solvation -31.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds