Wall clock time and date at job start Sat Apr 11 2020 05:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36002 * 116.99591 * 2 1 4 4 C 1.38722 * 120.14163 * 0.18763 * 3 2 1 5 5 C 1.37830 * 120.17154 * 180.28325 * 4 3 2 6 6 C 1.39643 * 120.35381 * 359.75732 * 5 4 3 7 7 C 1.38563 * 119.12600 * 0.02666 * 6 5 4 8 8 C 1.38197 * 120.51640 * 359.95501 * 7 6 5 9 9 C 1.51216 * 108.56536 * 179.97438 * 7 6 5 10 10 C 1.53734 * 104.58565 * 0.02562 * 9 7 6 11 11 N 1.39863 * 129.27061 * 179.97438 * 6 5 4 12 12 S 1.65596 * 124.97669 * 0.02821 * 11 6 5 13 13 O 1.42104 * 104.27864 * 26.06888 * 12 11 6 14 14 O 1.42099 * 104.27811 * 153.92586 * 12 11 6 15 15 C 1.81401 * 104.45029 * 269.99683 * 12 11 6 16 16 C 1.53004 * 109.47069 * 179.97438 * 15 12 11 17 17 C 1.53000 * 109.47300 * 300.00050 * 16 15 12 18 18 C 1.52999 * 109.46941 * 60.00550 * 16 15 12 19 19 C 1.50701 * 109.46670 * 179.97438 * 16 15 12 20 20 H 1.08001 * 120.00429 * 0.02562 * 19 16 15 21 21 C 1.37880 * 119.99476 * 179.97438 * 19 16 15 22 22 N 1.31511 * 120.00454 * 0.02562 * 21 19 16 23 23 Si 1.86806 * 119.99767 * 180.02562 * 21 19 16 24 24 H 1.48494 * 109.47443 * 89.99868 * 23 21 19 25 25 H 1.48504 * 109.46819 * 210.00411 * 23 21 19 26 26 H 1.48507 * 109.47016 * 329.99850 * 23 21 19 27 27 H 1.08996 * 109.47630 * 300.00206 * 1 2 3 28 28 H 1.08996 * 109.46752 * 60.00901 * 1 2 3 29 29 H 1.08998 * 109.46547 * 180.02562 * 1 2 3 30 30 H 1.07998 * 119.91353 * 0.04447 * 4 3 2 31 31 H 1.07995 * 119.82610 * 179.78643 * 5 4 3 32 32 H 1.08002 * 119.93909 * 179.97438 * 8 7 6 33 33 H 1.09002 * 110.41560 * 118.77558 * 9 7 6 34 34 H 1.09004 * 110.41688 * 241.22281 * 9 7 6 35 35 H 1.09000 * 110.30327 * 118.93025 * 10 9 7 36 36 H 1.09006 * 110.29634 * 241.07029 * 10 9 7 37 37 H 1.09003 * 109.47223 * 300.00236 * 15 12 11 38 38 H 1.09001 * 109.46736 * 60.00074 * 15 12 11 39 39 H 1.08999 * 109.46860 * 60.00317 * 17 16 15 40 40 H 1.08993 * 109.47092 * 180.02562 * 17 16 15 41 41 H 1.08997 * 109.46821 * 299.99843 * 17 16 15 42 42 H 1.08993 * 109.47806 * 59.99696 * 18 16 15 43 43 H 1.09003 * 109.46886 * 179.97438 * 18 16 15 44 44 H 1.08999 * 109.46693 * 299.99504 * 18 16 15 45 45 H 0.96999 * 120.00205 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2936 2.3771 0.0039 5 6 1.9186 3.6055 -0.0020 6 6 3.3126 3.6880 -0.0068 7 6 4.0574 2.5196 -0.0062 8 6 3.4306 1.2879 0.0001 9 6 5.5249 2.8841 -0.0127 10 6 5.5420 4.4214 -0.0165 11 7 4.1323 4.8212 -0.0135 12 16 3.5893 6.3856 -0.0167 13 8 2.3080 6.3131 0.5935 14 8 4.6452 7.1243 0.5823 15 6 3.4345 6.8076 -1.7741 16 6 2.9337 8.2468 -1.9109 17 6 1.5685 8.3784 -1.2327 18 6 3.9286 9.1986 -1.2437 19 6 2.8057 8.5974 -3.3709 20 1 3.0561 7.8667 -4.1258 21 6 2.3679 9.8508 -3.7430 22 7 2.0625 10.7404 -2.8239 23 14 2.2086 10.2853 -5.5529 24 1 0.8442 9.9403 -6.0266 25 1 2.4428 11.7404 -5.7350 26 1 3.2124 9.5206 -6.3357 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 0.2151 2.3215 0.0077 31 1 1.3271 4.5091 -0.0024 32 1 4.0203 0.3831 0.0001 33 1 6.0158 2.5011 0.8820 34 1 6.0092 2.4959 -0.9087 35 1 6.0441 4.7963 0.8754 36 1 6.0373 4.7917 -0.9141 37 1 4.4070 6.7134 -2.2574 38 1 2.7254 6.1297 -2.2493 39 1 1.6616 8.1249 -0.1766 40 1 1.2116 9.4035 -1.3305 41 1 0.8598 7.7003 -1.7081 42 1 4.9011 9.1049 -1.7268 43 1 3.5720 10.2240 -1.3415 44 1 4.0216 8.9450 -0.1877 45 1 1.7548 11.6223 -3.0857 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295828107.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:34 Heat of formation + Delta-G solvation = -91.243012 kcal Electronic energy + Delta-G solvation = -28411.179688 eV Core-core repulsion = 24520.773428 eV Total energy + Delta-G solvation = -3890.406260 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.64114 -39.85298 -38.37554 -38.20767 -37.08064 -36.41420 -33.68345 -33.31894 -30.41527 -29.86925 -28.45608 -27.74985 -27.71305 -27.28915 -24.21239 -23.58921 -22.19516 -21.37009 -20.24207 -19.01126 -18.62321 -17.97987 -17.60524 -17.37190 -16.89366 -16.66259 -16.60440 -16.29573 -16.14931 -15.40357 -14.95424 -14.81876 -14.63920 -14.48844 -14.16837 -13.96450 -13.85792 -13.60566 -13.42010 -13.29517 -13.14706 -13.02158 -12.93274 -12.83267 -12.73225 -12.64039 -12.56885 -12.30969 -12.22465 -12.17066 -12.03902 -11.63026 -11.59973 -11.45455 -10.89769 -10.61939 -10.44910 -9.82129 -8.55019 -8.06301 -6.25430 -0.90565 0.28433 0.42307 1.42819 1.44714 1.50659 1.53536 2.36662 2.41893 2.60185 2.80655 2.95421 3.16486 3.30645 3.67440 3.89888 3.94025 3.98963 4.05771 4.20770 4.26196 4.28327 4.45120 4.47988 4.52267 4.65786 4.73166 4.78004 4.79958 4.83173 4.84752 4.91037 5.00685 5.03547 5.05306 5.21798 5.32009 5.34930 5.39809 5.46172 5.55799 5.61109 5.77400 5.92379 6.05954 6.29339 6.47115 6.78639 7.43107 8.93643 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015001 B = 0.003493 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.081610 B = 8013.000749 C = 8821.931222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.327 6.327 3 C 0.097 3.903 4 C -0.176 4.176 5 C -0.135 4.135 6 C 0.103 3.897 7 C -0.094 4.094 8 C -0.111 4.111 9 C -0.072 4.072 10 C 0.095 3.905 11 N -0.945 5.945 12 S 2.610 3.390 13 O -0.973 6.973 14 O -0.973 6.973 15 C -0.578 4.578 16 C 0.071 3.929 17 C -0.159 4.159 18 C -0.161 4.161 19 C -0.519 4.519 20 H 0.062 0.938 21 C 0.020 3.980 22 N -0.907 5.907 23 Si 0.955 3.045 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.267 1.267 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.122 0.878 30 H 0.151 0.849 31 H 0.129 0.871 32 H 0.158 0.842 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.139 0.861 38 H 0.132 0.868 39 H 0.032 0.968 40 H 0.073 0.927 41 H 0.039 0.961 42 H 0.043 0.957 43 H 0.074 0.926 44 H 0.031 0.969 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.182 -21.320 4.318 21.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.241 6.241 3 C 0.051 3.949 4 C -0.195 4.195 5 C -0.157 4.157 6 C 0.007 3.993 7 C -0.099 4.099 8 C -0.130 4.130 9 C -0.109 4.109 10 C -0.028 4.028 11 N -0.770 5.770 12 S 2.711 3.289 13 O -0.964 6.964 14 O -0.964 6.964 15 C -0.711 4.711 16 C 0.069 3.931 17 C -0.217 4.217 18 C -0.218 4.218 19 C -0.558 4.558 20 H 0.080 0.920 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.781 3.219 24 H -0.204 1.204 25 H -0.211 1.211 26 H -0.191 1.191 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.140 0.860 30 H 0.168 0.832 31 H 0.147 0.853 32 H 0.175 0.825 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.157 0.843 38 H 0.150 0.850 39 H 0.051 0.949 40 H 0.092 0.908 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.092 0.908 44 H 0.050 0.950 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.090 -20.651 5.157 21.508 hybrid contribution -0.689 1.007 -1.412 1.866 sum 2.401 -19.644 3.746 20.141 Atomic orbital electron populations 1.23327 0.76758 1.05568 1.02053 1.86037 1.23068 1.25910 1.89121 1.18865 0.92480 0.84387 0.99215 1.21112 1.01156 0.90739 1.06531 1.20900 0.91937 0.99564 1.03307 1.18253 0.91394 0.86851 1.02806 1.20181 0.96668 0.90848 1.02185 1.19770 0.91249 0.97400 1.04607 1.21207 0.91131 0.92262 1.06341 1.22314 0.78736 0.97127 1.04583 1.56260 1.14706 1.20897 1.85125 1.05136 0.73301 0.71360 0.79089 1.93491 1.42293 1.84952 1.75626 1.93516 1.57333 1.69576 1.75953 1.30463 1.11343 1.08076 1.21262 1.17939 0.91992 0.86056 0.97119 1.22206 0.98897 1.03709 0.96920 1.22219 0.98679 1.04057 0.96894 1.21254 1.45033 0.98639 0.90893 0.91953 1.25669 0.94761 0.96289 1.01297 1.69930 1.45031 1.05714 1.33863 0.85600 0.78479 0.77249 0.80575 1.20359 1.21091 1.19143 0.92109 0.92083 0.85976 0.83154 0.85293 0.82476 0.86636 0.86131 0.89173 0.88198 0.84274 0.84993 0.94921 0.90802 0.94150 0.93816 0.90758 0.95041 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.82 113.37 1.11 1.33 16 2 O -0.33 -6.49 10.50 -93.57 -0.98 -7.47 16 3 C 0.10 2.20 6.69 22.48 0.15 2.35 16 4 C -0.18 -4.36 9.02 22.29 0.20 -4.16 16 5 C -0.14 -4.12 9.37 22.51 0.21 -3.91 16 6 C 0.10 3.03 6.60 38.28 0.25 3.28 16 7 C -0.09 -2.14 6.23 -19.63 -0.12 -2.26 16 8 C -0.11 -2.32 9.98 22.36 0.22 -2.10 16 9 C -0.07 -1.14 6.93 30.26 0.21 -0.93 16 10 C 0.10 2.08 7.08 86.62 0.61 2.69 16 11 N -0.95 -28.54 3.40 -337.62 -1.15 -29.69 16 12 S 2.61 99.41 4.59 -56.49 -0.26 99.15 16 13 O -0.97 -41.42 12.88 -127.65 -1.64 -43.07 16 14 O -0.97 -40.79 15.18 -127.65 -1.94 -42.73 16 15 C -0.58 -22.54 5.12 71.98 0.37 -22.18 16 16 C 0.07 3.45 0.52 -52.93 -0.03 3.42 16 17 C -0.16 -7.94 7.78 71.98 0.56 -7.38 16 18 C -0.16 -7.96 7.77 71.98 0.56 -7.40 16 19 C -0.52 -27.03 8.01 25.60 0.21 -26.82 16 20 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 21 C 0.02 1.03 5.15 84.66 0.44 1.46 16 22 N -0.91 -49.93 9.35 21.45 0.20 -49.73 16 23 Si 0.96 41.89 29.54 68.60 2.03 43.92 16 24 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 25 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 26 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 27 H 0.06 0.71 7.66 -2.39 -0.02 0.70 16 28 H 0.06 0.72 7.68 -2.39 -0.02 0.70 16 29 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.15 2.99 6.30 -2.91 -0.02 2.97 16 31 H 0.13 4.38 6.11 -2.91 -0.02 4.36 16 32 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 33 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.09 1.87 8.14 -2.39 -0.02 1.86 16 36 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.14 4.79 8.14 -2.39 -0.02 4.77 16 38 H 0.13 4.77 8.14 -2.39 -0.02 4.75 16 39 H 0.03 1.55 5.46 -2.39 -0.01 1.53 16 40 H 0.07 4.00 6.07 -2.39 -0.01 3.98 16 41 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.07 4.00 6.07 -2.39 -0.01 3.99 16 44 H 0.03 1.48 5.46 -2.39 -0.01 1.47 16 45 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -69.29 361.04 2.21 -67.08 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: 1.00 Total: 25.14 kcal Atomic # 6 Polarization: -67.55 SS G_CDS: 4.95 Total: -62.60 kcal Atomic # 7 Polarization: -78.47 SS G_CDS: -0.95 Total: -79.42 kcal Atomic # 8 Polarization: -88.70 SS G_CDS: -4.56 Total: -93.27 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Atomic # 16 Polarization: 99.41 SS G_CDS: -0.26 Total: 99.15 kcal Total: -69.29 2.21 -67.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295828107.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.165 kcal (2) G-P(sol) polarization free energy of solvation -69.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds