Wall clock time and date at job start Sat Apr 11 2020 05:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47230 * 2 1 4 4 C 1.50701 * 109.47205 * 240.00364 * 2 1 3 5 5 H 1.08002 * 120.00479 * 240.00222 * 4 2 1 6 6 C 1.37882 * 120.00152 * 59.99908 * 4 2 1 7 7 N 1.31523 * 119.99817 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00444 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46954 * 59.99579 * 8 6 4 10 10 H 1.48495 * 109.47461 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46586 * 299.99968 * 8 6 4 12 12 C 1.52997 * 109.47003 * 120.00498 * 2 1 3 13 13 S 1.81395 * 109.47169 * 299.99743 * 12 2 1 14 14 O 1.42103 * 110.54379 * 68.25083 * 13 12 2 15 15 O 1.42101 * 110.54366 * 291.50155 * 13 12 2 16 16 N 1.65600 * 104.45350 * 179.87605 * 13 12 2 17 17 C 1.46500 * 119.99915 * 64.02552 * 16 13 12 18 18 H 1.09001 * 110.27189 * 338.13993 * 17 16 13 19 19 C 1.51373 * 110.30103 * 216.06829 * 17 16 13 20 20 C 1.38494 * 130.39213 * 78.55720 * 19 17 16 21 21 C 1.38103 * 120.21191 * 180.19291 * 20 19 17 22 22 C 1.38249 * 119.93649 * 359.49822 * 21 20 19 23 23 C 1.38099 * 119.93476 * 0.24961 * 22 21 20 24 24 C 1.38218 * 109.75739 * 258.26930 * 19 17 16 25 25 C 1.51375 * 109.75686 * 359.97438 * 24 19 17 26 26 C 1.54342 * 110.30145 * 100.32195 * 17 16 13 27 27 H 1.09003 * 110.82243 * 334.34825 * 26 17 16 28 28 O 1.42901 * 110.82275 * 210.99416 * 26 17 16 29 29 H 1.09000 * 109.47166 * 300.00013 * 1 2 3 30 30 H 1.09000 * 109.47341 * 59.99735 * 1 2 3 31 31 H 1.08996 * 109.47240 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47022 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47175 * 300.00367 * 3 2 1 34 34 H 1.09006 * 109.46648 * 60.00454 * 3 2 1 35 35 H 0.96992 * 119.99649 * 179.97438 * 7 6 4 36 36 H 1.09001 * 109.46995 * 180.02562 * 12 2 1 37 37 H 1.08996 * 109.47225 * 59.99865 * 12 2 1 38 38 H 0.96999 * 120.00046 * 244.03780 * 16 13 12 39 39 H 1.07995 * 119.89251 * 359.94772 * 20 19 17 40 40 H 1.08002 * 120.02980 * 179.77130 * 21 20 19 41 41 H 1.08006 * 120.03116 * 180.27018 * 22 21 20 42 42 H 1.08004 * 119.89114 * 180.02562 * 23 22 21 43 43 H 1.08998 * 110.30004 * 101.74182 * 25 24 19 44 44 H 1.09001 * 110.30092 * 223.89217 * 25 24 19 45 45 H 0.96697 * 114.00205 * 179.97438 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1316 6 6 1.6993 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3213 -1.1201 -4.0081 9 1 1.8258 -2.5200 -4.0079 10 1 1.8259 -0.4203 -5.2205 11 1 3.8063 -1.1205 -4.0083 12 6 2.0400 -0.7213 1.2492 13 16 1.4354 0.1337 2.7303 14 8 0.0275 -0.0161 2.8528 15 8 2.0501 1.4086 2.8560 16 7 2.0506 -0.7427 3.9936 17 6 3.4998 -0.8197 4.1945 18 1 4.0224 -0.5979 3.2640 19 6 3.8876 -2.1928 4.7001 20 6 4.0344 -3.3908 4.0210 21 6 4.3980 -4.5358 4.7022 22 6 4.6265 -4.4847 6.0647 23 6 4.4856 -3.2900 6.7428 24 6 4.1161 -2.1417 6.0623 25 6 3.8980 -0.7307 6.5652 26 6 3.9393 0.1585 5.3045 27 1 3.2364 0.9871 5.3913 28 8 5.2623 0.6408 5.0619 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 0.7087 1.1614 -3.4843 36 1 3.1300 -0.7209 1.2494 37 1 1.6766 -1.7490 1.2491 38 1 1.4516 -1.2051 4.6003 39 1 3.8601 -3.4306 2.9559 40 1 4.5081 -5.4693 4.1702 41 1 4.9151 -5.3783 6.5983 42 1 4.6647 -3.2508 7.8072 43 1 2.9269 -0.6491 7.0534 44 1 4.6937 -0.4477 7.2543 45 1 5.5844 1.2595 5.7316 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296355250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:46 Heat of formation + Delta-G solvation = -93.415788 kcal Electronic energy + Delta-G solvation = -28553.254451 eV Core-core repulsion = 24662.753973 eV Total energy + Delta-G solvation = -3890.500478 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.58835 -37.44332 -36.54234 -36.28328 -35.37183 -35.13115 -32.84410 -31.67221 -30.96918 -28.34125 -26.68223 -26.55206 -25.71560 -25.22083 -22.70341 -21.24095 -21.02412 -19.70179 -18.80033 -17.77016 -17.52720 -16.53828 -15.91795 -15.76912 -15.64495 -15.35557 -15.14200 -14.76899 -14.61908 -14.38313 -13.75754 -13.58238 -13.20837 -13.05806 -13.03200 -12.58975 -12.50370 -12.31455 -12.11225 -11.90013 -11.53603 -11.46115 -11.31204 -11.10220 -11.05872 -10.95258 -10.90509 -10.69725 -10.40904 -10.29293 -10.23253 -10.11431 -9.74414 -9.65028 -9.35382 -9.00241 -8.78364 -8.69296 -8.39537 -6.03117 -4.15111 0.75443 1.17524 1.23017 3.07021 3.27578 3.33025 3.34665 3.61947 3.94590 4.14956 4.24330 4.33817 4.38868 4.73705 4.77744 4.82952 4.87713 4.92609 5.08605 5.22224 5.31489 5.34849 5.41128 5.52006 5.59770 5.66613 5.70928 5.80400 5.91599 5.98101 6.25813 6.34042 6.36803 6.44884 6.70060 6.79500 6.80995 6.89830 6.99083 7.07379 7.31765 7.50420 7.50760 7.67986 7.98236 8.09295 8.32897 8.82977 9.50228 10.98253 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014563 B = 0.003720 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.160346 B = 7524.586228 C = 8422.680061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.083 3.917 3 C -0.164 4.164 4 C -0.502 4.502 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C -0.581 4.581 13 S 2.589 3.411 14 O -0.962 6.962 15 O -0.959 6.959 16 N -1.115 6.115 17 C 0.200 3.800 18 H 0.107 0.893 19 C -0.102 4.102 20 C -0.088 4.088 21 C -0.123 4.123 22 C -0.113 4.113 23 C -0.113 4.113 24 C -0.080 4.080 25 C -0.115 4.115 26 C 0.091 3.909 27 H 0.087 0.913 28 O -0.552 6.552 29 H 0.027 0.973 30 H 0.095 0.905 31 H 0.036 0.964 32 H 0.037 0.963 33 H 0.095 0.905 34 H 0.028 0.972 35 H 0.263 0.737 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.413 0.587 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.944 -6.565 18.842 21.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.081 3.919 3 C -0.221 4.221 4 C -0.541 4.541 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C -0.715 4.715 13 S 2.688 3.312 14 O -0.952 6.952 15 O -0.948 6.948 16 N -0.870 5.870 17 C 0.092 3.908 18 H 0.125 0.875 19 C -0.104 4.104 20 C -0.106 4.106 21 C -0.141 4.141 22 C -0.131 4.131 23 C -0.131 4.131 24 C -0.081 4.081 25 C -0.153 4.153 26 C 0.030 3.970 27 H 0.104 0.896 28 O -0.357 6.357 29 H 0.046 0.954 30 H 0.114 0.886 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.114 0.886 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.246 0.754 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.137 0.863 43 H 0.108 0.892 44 H 0.102 0.898 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 6.368 -5.917 18.169 20.141 hybrid contribution 0.540 -1.048 -0.324 1.223 sum 6.908 -6.965 17.844 20.363 Atomic orbital electron populations 1.22277 0.96908 1.00645 1.02318 1.17928 0.92815 0.92232 0.88968 1.22275 0.99789 0.97741 1.02327 1.20894 1.31784 1.12104 0.89365 0.92345 1.24934 0.94870 0.94977 0.98909 1.69792 1.36222 1.22575 1.23593 0.86595 0.79173 0.79700 0.82150 1.20288 1.21183 1.20247 1.30526 1.11275 1.12943 1.16752 1.05830 0.74436 0.75325 0.75643 1.93562 1.29299 1.86651 1.85700 1.93562 1.77910 1.37983 1.85380 1.55961 1.12336 1.71280 1.47392 1.19735 0.80745 0.90515 0.99797 0.87533 1.20504 1.00786 0.94544 0.94560 1.20767 0.98128 0.91320 1.00407 1.21074 1.00367 0.98164 0.94530 1.21068 0.99895 0.97502 0.94624 1.20579 1.01123 0.91761 0.99684 1.20489 0.98367 0.94955 0.94262 1.21856 1.03005 0.91704 0.98686 1.22840 0.85274 0.95546 0.93361 0.89557 1.86491 1.30429 1.65751 1.53062 0.95422 0.88601 0.94459 0.94403 0.88637 0.95363 0.92683 0.86436 0.86141 0.75362 0.85530 0.85628 0.85875 0.86287 0.89187 0.89845 0.77128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 7.77 37.16 0.29 -3.74 16 2 C 0.08 2.00 0.52 -155.66 -0.08 1.92 16 3 C -0.16 -4.03 7.78 37.16 0.29 -3.74 16 4 C -0.50 -13.14 8.01 -34.44 -0.28 -13.41 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.72 5.15 -17.81 -0.09 1.63 16 7 N -0.88 -24.10 9.35 55.43 0.52 -23.59 16 8 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 C -0.58 -11.30 4.89 37.16 0.18 -11.11 16 13 S 2.59 47.45 4.41 -107.50 -0.47 46.97 16 14 O -0.96 -19.94 15.69 -57.54 -0.90 -20.84 16 15 O -0.96 -19.76 15.47 -57.54 -0.89 -20.65 16 16 N -1.11 -15.37 5.38 -4.99 -0.03 -15.40 16 17 C 0.20 2.67 3.05 -68.05 -0.21 2.46 16 18 H 0.11 1.51 7.16 -51.93 -0.37 1.14 16 19 C -0.10 -1.25 5.71 -104.20 -0.59 -1.84 16 20 C -0.09 -1.01 10.04 -39.54 -0.40 -1.41 16 21 C -0.12 -1.22 10.05 -39.63 -0.40 -1.62 16 22 C -0.11 -1.02 10.05 -39.63 -0.40 -1.42 16 23 C -0.11 -1.07 10.04 -39.54 -0.40 -1.47 16 24 C -0.08 -0.86 6.14 -104.20 -0.64 -1.50 16 25 C -0.12 -1.07 6.52 -26.86 -0.18 -1.24 16 26 C 0.09 1.07 4.15 -25.33 -0.11 0.96 16 27 H 0.09 1.04 8.08 -51.93 -0.42 0.62 16 28 O -0.55 -6.48 13.41 -35.23 -0.47 -6.95 16 29 H 0.03 0.64 5.46 -51.93 -0.28 0.36 16 30 H 0.10 2.54 6.07 -51.93 -0.32 2.22 16 31 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.10 2.53 6.07 -51.93 -0.32 2.22 16 34 H 0.03 0.66 5.47 -51.93 -0.28 0.37 16 35 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 36 H 0.12 2.08 7.46 -51.92 -0.39 1.69 16 37 H 0.12 2.12 8.14 -51.93 -0.42 1.69 16 38 H 0.41 4.89 8.83 -34.47 -0.30 4.59 16 39 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 40 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 41 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 42 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 43 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.08 0.62 8.11 -51.93 -0.42 0.20 16 45 H 0.38 2.59 9.12 45.56 0.42 3.01 16 LS Contribution 367.10 15.07 5.53 5.53 Total: -1.00 -33.23 367.10 -10.35 -43.58 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -5.61 Total: 11.27 kcal Atomic # 6 Polarization: -32.54 SS G_CDS: -3.00 Total: -35.54 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.49 Total: -38.98 kcal Atomic # 8 Polarization: -46.18 SS G_CDS: -2.27 Total: -48.44 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 47.45 SS G_CDS: -0.47 Total: 46.97 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.23 -10.35 -43.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296355250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.837 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds