Wall clock time and date at job start Sat Apr 11 2020 05:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47362 * 2 1 4 4 O 1.21253 * 119.99530 * 359.97438 * 3 2 1 5 5 C 1.47166 * 120.00267 * 180.02562 * 3 2 1 6 6 C 1.39874 * 120.16847 * 359.71905 * 5 3 2 7 7 C 1.37861 * 119.82068 * 179.72235 * 6 5 3 8 8 C 1.38432 * 120.17462 * 0.55757 * 7 6 5 9 9 C 1.38381 * 120.34537 * 359.71956 * 8 7 6 10 10 S 1.76204 * 119.91192 * 180.02562 * 9 8 7 11 11 O 1.42098 * 106.39834 * 23.51908 * 10 9 8 12 12 O 1.42094 * 106.40050 * 156.44077 * 10 9 8 13 13 N 1.65604 * 107.21734 * 269.98129 * 10 9 8 14 14 C 1.46501 * 120.00283 * 64.99641 * 13 10 9 15 15 C 1.52996 * 109.47014 * 164.99905 * 14 13 10 16 16 C 1.52998 * 109.47535 * 300.00452 * 15 14 13 17 17 C 1.53004 * 109.47081 * 60.00534 * 15 14 13 18 18 C 1.50698 * 109.47282 * 180.02562 * 15 14 13 19 19 H 1.07997 * 119.99652 * 1.36397 * 18 15 14 20 20 C 1.37872 * 120.00232 * 181.35678 * 18 15 14 21 21 N 1.31518 * 120.00098 * 193.96641 * 20 18 15 22 22 Si 1.86797 * 120.00121 * 13.97139 * 20 18 15 23 23 H 1.48501 * 109.47355 * 84.55180 * 22 20 18 24 24 H 1.48506 * 109.47147 * 204.55379 * 22 20 18 25 25 H 1.48503 * 109.46883 * 324.54898 * 22 20 18 26 26 C 1.37906 * 120.17366 * 0.02562 * 9 8 7 27 27 H 1.08993 * 109.47194 * 300.00078 * 1 2 3 28 28 H 1.08999 * 109.47054 * 60.00147 * 1 2 3 29 29 H 1.09002 * 109.47268 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47054 * 119.99853 * 2 1 3 31 31 H 1.09003 * 109.47577 * 239.99490 * 2 1 3 32 32 H 1.08003 * 120.09020 * 0.02562 * 6 5 3 33 33 H 1.08004 * 119.91668 * 180.25358 * 7 6 5 34 34 H 1.08001 * 119.82281 * 179.74015 * 8 7 6 35 35 H 0.96999 * 119.99387 * 245.00317 * 13 10 9 36 36 H 1.08994 * 109.47055 * 285.00408 * 14 13 10 37 37 H 1.09002 * 109.46837 * 45.00109 * 14 13 10 38 38 H 1.09003 * 109.47065 * 69.32904 * 16 15 14 39 39 H 1.08998 * 109.47610 * 189.33331 * 16 15 14 40 40 H 1.09002 * 109.47170 * 309.33467 * 16 15 14 41 41 H 1.08994 * 109.47200 * 59.99366 * 17 15 14 42 42 H 1.09000 * 109.47132 * 180.02562 * 17 15 14 43 43 H 1.08999 * 109.46645 * 299.99724 * 17 15 14 44 44 H 0.96999 * 119.99777 * 179.97438 * 21 20 18 45 45 H 1.07999 * 120.08793 * 180.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2444 2.3424 -0.0005 5 6 3.4793 1.6897 -0.0006 6 6 4.3913 0.6293 0.0048 7 6 5.7452 0.8894 -0.0016 8 6 6.2027 2.1959 -0.0016 9 6 5.3066 3.2504 -0.0011 10 16 5.9016 4.9090 -0.0019 11 8 7.2131 4.8645 -0.5468 12 8 4.8605 5.7084 -0.5461 13 7 6.0678 5.3709 1.5798 14 6 7.0507 4.7049 2.4380 15 6 7.2722 5.5384 3.7017 16 6 7.7900 6.9249 3.3140 17 6 5.9493 5.6809 4.4570 18 6 8.2838 4.8537 4.5842 19 1 8.7409 3.9289 4.2647 20 6 8.6257 5.4079 5.7995 21 7 9.6891 4.9775 6.4426 22 14 7.5785 6.7700 6.5326 23 1 6.4394 6.1734 7.2754 24 1 8.4037 7.5833 7.4616 25 1 7.0600 7.6363 5.4436 26 6 3.9493 3.0067 0.0000 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 4.0359 -0.3906 0.0090 33 1 6.4508 0.0717 -0.0015 34 1 7.2645 2.3931 -0.0024 35 1 5.5142 6.0823 1.9379 36 1 6.6818 3.7171 2.7142 37 1 7.9932 4.6033 1.8999 38 1 6.9964 7.4833 2.8173 39 1 8.1040 7.4594 4.2105 40 1 8.6384 6.8199 2.6377 41 1 5.5803 4.6932 4.7332 42 1 6.1069 6.2751 5.3571 43 1 5.2179 6.1764 3.8184 44 1 9.9298 5.3677 7.2974 45 1 3.2512 3.8307 -0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315956225.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:16 Heat of formation + Delta-G solvation = -77.247328 kcal Electronic energy + Delta-G solvation = -27654.639269 eV Core-core repulsion = 23764.839908 eV Total energy + Delta-G solvation = -3889.799361 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.40837 -38.56288 -37.43325 -37.03270 -35.75140 -33.47067 -33.27480 -31.70002 -31.49244 -31.32729 -26.39315 -25.99097 -25.71891 -24.64698 -23.83414 -22.72482 -20.51557 -19.31728 -19.16376 -18.14374 -17.40201 -16.32798 -16.30231 -16.09953 -15.91250 -15.83299 -15.41746 -15.19769 -14.76363 -14.24938 -14.13516 -13.90597 -13.72499 -13.01703 -12.91585 -12.77361 -12.73839 -12.62349 -12.40174 -12.20866 -12.04055 -12.01679 -11.97581 -11.83272 -11.78182 -11.61985 -11.56116 -10.99028 -10.48861 -10.24240 -10.19746 -10.07065 -10.01061 -9.75886 -9.37631 -9.16482 -9.09335 -8.68947 -8.48719 -6.18435 -4.15974 0.17612 0.48968 0.72277 1.98882 3.07224 3.23562 3.31672 3.34139 3.38202 3.56182 3.83511 4.31995 4.33831 4.40314 4.56730 4.60882 4.67820 4.70220 4.87960 5.06377 5.13332 5.17590 5.36820 5.44289 5.49304 5.50528 5.53779 5.75496 5.77075 5.83964 5.86797 5.90337 5.99418 6.03447 6.35481 6.39977 6.44840 6.55429 6.63577 6.67079 6.89505 7.16201 7.17980 7.28498 7.42419 7.70509 8.39527 8.84764 9.46148 10.94401 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013544 B = 0.003285 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.784160 B = 8521.360961 C = 9118.896997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.170 4.170 3 C 0.395 3.605 4 O -0.447 6.447 5 C -0.196 4.196 6 C -0.024 4.024 7 C -0.150 4.150 8 C 0.014 3.986 9 C -0.685 4.685 10 S 2.692 3.308 11 O -0.954 6.954 12 O -0.966 6.966 13 N -1.110 6.110 14 C 0.136 3.864 15 C 0.036 3.964 16 C -0.144 4.144 17 C -0.150 4.150 18 C -0.515 4.515 19 H 0.077 0.923 20 C 0.077 3.923 21 N -0.891 5.891 22 Si 0.883 3.117 23 H -0.286 1.286 24 H -0.305 1.305 25 H -0.247 1.247 26 C 0.038 3.962 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.149 0.851 35 H 0.417 0.583 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.025 0.975 39 H 0.055 0.945 40 H 0.049 0.951 41 H 0.053 0.947 42 H 0.042 0.958 43 H 0.032 0.968 44 H 0.265 0.735 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.801 -10.802 -13.039 21.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.207 4.207 3 C 0.272 3.728 4 O -0.322 6.322 5 C -0.198 4.198 6 C -0.042 4.042 7 C -0.169 4.169 8 C -0.005 4.005 9 C -0.770 4.770 10 S 2.780 3.220 11 O -0.944 6.944 12 O -0.956 6.956 13 N -0.873 5.873 14 C 0.011 3.989 15 C 0.034 3.966 16 C -0.201 4.201 17 C -0.207 4.207 18 C -0.554 4.554 19 H 0.095 0.905 20 C -0.126 4.126 21 N -0.528 5.528 22 Si 0.716 3.284 23 H -0.214 1.214 24 H -0.234 1.234 25 H -0.173 1.173 26 C 0.019 3.981 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.157 0.843 33 H 0.159 0.841 34 H 0.167 0.833 35 H 0.254 0.746 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.044 0.956 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.051 0.949 44 H 0.075 0.925 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -12.803 -9.978 -13.692 21.236 hybrid contribution -0.840 0.131 1.169 1.445 sum -13.642 -9.847 -12.524 20.974 Atomic orbital electron populations 1.21601 0.93409 1.01928 1.03281 1.21997 0.98620 0.95400 1.04708 1.22506 0.87449 0.91505 0.71297 1.90550 1.58135 1.47736 1.35755 1.20626 0.95395 0.94365 1.09413 1.21726 0.93159 0.98779 0.90534 1.21320 0.95764 0.97217 1.02589 1.21332 1.00118 0.91940 0.87092 1.31233 1.02174 1.25314 1.18232 1.01953 0.73771 0.73309 0.72996 1.93593 1.37628 1.86410 1.76728 1.93579 1.58248 1.66780 1.76968 1.55519 1.51415 1.49628 1.30738 1.21511 0.89763 0.95375 0.92208 1.18619 0.93587 0.92966 0.91463 1.22291 0.99387 0.97710 1.00750 1.22372 0.98159 1.00690 0.99467 1.20724 1.22384 1.10088 1.02162 0.90520 1.24956 0.94303 0.96280 0.97080 1.69946 1.23467 1.43406 1.15933 0.87324 0.79553 0.82958 0.78578 1.21389 1.23398 1.17323 1.21172 0.93621 0.97257 0.86087 0.91952 0.92034 0.91908 0.88114 0.88242 0.84340 0.84106 0.83308 0.74639 0.92331 0.90468 0.95576 0.92632 0.93184 0.92803 0.93951 0.94912 0.92535 0.83280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.20 37.16 0.34 -0.65 16 2 C -0.17 -1.07 5.03 -27.88 -0.14 -1.21 16 3 C 0.40 4.08 7.12 -30.68 -0.22 3.86 16 4 O -0.45 -6.13 15.98 5.58 0.09 -6.04 16 5 C -0.20 -2.10 5.87 -105.07 -0.62 -2.72 16 6 C -0.02 -0.19 9.47 -39.11 -0.37 -0.56 16 7 C -0.15 -1.32 10.03 -39.65 -0.40 -1.72 16 8 C 0.01 0.16 9.52 -39.46 -0.38 -0.21 16 9 C -0.68 -8.86 5.94 -39.65 -0.24 -9.10 16 10 S 2.69 39.99 5.74 -107.50 -0.62 39.37 16 11 O -0.95 -16.28 16.74 -57.17 -0.96 -17.24 16 12 O -0.97 -16.16 17.27 -57.17 -0.99 -17.15 16 13 N -1.11 -16.91 5.43 -10.62 -0.06 -16.97 16 14 C 0.14 2.40 5.04 -4.04 -0.02 2.38 16 15 C 0.04 0.76 0.51 -155.66 -0.08 0.68 16 16 C -0.14 -2.96 7.54 37.16 0.28 -2.68 16 17 C -0.15 -2.96 7.52 37.16 0.28 -2.68 16 18 C -0.52 -13.23 8.62 -34.44 -0.30 -13.53 16 19 H 0.08 2.11 7.99 -52.49 -0.42 1.69 16 20 C 0.08 2.08 5.32 -17.82 -0.09 1.98 16 21 N -0.89 -25.99 13.96 55.43 0.77 -25.22 16 22 Si 0.88 20.86 22.79 -169.99 -3.87 16.99 16 23 H -0.29 -6.72 7.10 56.52 0.40 -6.32 16 24 H -0.31 -7.42 7.11 56.52 0.40 -7.02 16 25 H -0.25 -5.37 4.65 56.52 0.26 -5.11 16 26 C 0.04 0.49 9.07 -39.11 -0.35 0.13 16 27 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 28 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.10 0.46 8.08 -51.93 -0.42 0.04 16 31 H 0.10 0.42 8.09 -51.93 -0.42 0.00 16 32 H 0.14 0.61 7.05 -52.48 -0.37 0.24 16 33 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 34 H 0.15 1.55 7.60 -52.49 -0.40 1.15 16 35 H 0.42 5.93 6.53 -34.47 -0.22 5.71 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 1.38 7.75 -51.93 -0.40 0.98 16 38 H 0.03 0.46 7.47 -51.93 -0.39 0.07 16 39 H 0.05 1.21 4.30 -51.93 -0.22 0.98 16 40 H 0.05 1.01 8.12 -51.93 -0.42 0.59 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.04 0.90 2.25 -51.93 -0.12 0.78 16 43 H 0.03 0.54 6.60 -51.93 -0.34 0.20 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.15 1.97 7.20 -52.49 -0.38 1.59 16 LS Contribution 368.59 15.07 5.55 5.55 Total: -1.00 -33.90 368.59 -8.71 -42.61 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.33 Total: 4.12 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -2.30 Total: -26.03 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 0.72 Total: -42.19 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -1.86 Total: -40.43 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -3.87 Total: 16.99 kcal Atomic # 16 Polarization: 39.99 SS G_CDS: -0.62 Total: 39.37 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.90 -8.71 -42.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315956225.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.637 kcal (2) G-P(sol) polarization free energy of solvation -33.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds