Wall clock time and date at job start Sat Apr 11 2020 05:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46965 * 2 1 4 4 N 1.46501 * 109.47358 * 180.02562 * 3 2 1 5 5 C 1.37099 * 119.99922 * 264.53626 * 4 3 2 6 6 H 1.07999 * 119.99650 * 146.01116 * 5 4 3 7 7 C 1.38951 * 119.99954 * 326.01778 * 5 4 3 8 8 N 1.31412 * 119.99820 * 337.80182 * 7 5 4 9 9 Si 1.86796 * 119.99967 * 157.80025 * 7 5 4 10 10 H 1.48506 * 109.47343 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47217 * 119.99654 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00130 * 9 7 5 13 13 C 1.34772 * 120.00030 * 84.53636 * 4 3 2 14 14 O 1.21292 * 120.00265 * 359.97438 * 13 4 3 15 15 C 1.50702 * 120.00149 * 180.02562 * 13 4 3 16 16 C 1.52993 * 109.47266 * 180.02562 * 15 13 4 17 17 S 1.81400 * 109.47167 * 179.97438 * 16 15 13 18 18 O 1.42098 * 110.54499 * 68.37080 * 17 16 15 19 19 O 1.42105 * 110.54000 * 291.62334 * 17 16 15 20 20 C 1.76204 * 104.44971 * 179.97438 * 17 16 15 21 21 C 1.38236 * 119.99727 * 90.00041 * 20 17 16 22 22 C 1.38232 * 119.99446 * 179.72437 * 21 20 17 23 23 C 1.38238 * 120.00359 * 0.25380 * 22 21 20 24 24 C 1.50702 * 120.00251 * 179.97438 * 23 22 21 25 25 C 1.38238 * 119.99675 * 0.02562 * 23 22 21 26 26 C 1.38230 * 119.99846 * 270.23470 * 20 17 16 27 27 H 1.09008 * 109.46741 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47220 * 299.99922 * 1 2 3 29 29 H 1.08994 * 109.47376 * 60.00711 * 1 2 3 30 30 H 1.08998 * 109.47220 * 240.00078 * 2 1 3 31 31 H 1.09000 * 109.47073 * 119.99585 * 2 1 3 32 32 H 1.08996 * 109.47509 * 59.99357 * 3 2 1 33 33 H 1.09008 * 109.46622 * 299.99931 * 3 2 1 34 34 H 0.97000 * 119.99630 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.47109 * 59.99598 * 15 13 4 36 36 H 1.09000 * 109.46505 * 299.99720 * 15 13 4 37 37 H 1.09002 * 109.47423 * 59.99743 * 16 15 13 38 38 H 1.09005 * 109.47143 * 299.99810 * 16 15 13 39 39 H 1.07998 * 120.00558 * 0.02562 * 21 20 17 40 40 H 1.08008 * 119.99952 * 180.28016 * 22 21 20 41 41 H 1.09004 * 109.47019 * 89.99750 * 24 23 22 42 42 H 1.08997 * 109.47237 * 209.99858 * 24 23 22 43 43 H 1.09003 * 109.46704 * 330.00619 * 24 23 22 44 44 H 1.08000 * 119.99404 * 179.97438 * 25 23 22 45 45 H 1.07998 * 120.00480 * 0.02562 * 26 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1910 1.5555 1.1810 6 1 5.1327 1.0427 1.3098 7 6 3.6746 2.3297 2.2129 8 7 2.8035 3.2780 1.9503 9 14 4.2184 2.0224 3.9733 10 1 5.1983 0.9068 4.0012 11 1 4.8507 3.2508 4.5177 12 1 3.0383 1.6646 4.8008 13 6 4.1784 1.3317 -1.1628 14 8 3.5716 1.2313 -2.2082 15 6 5.6854 1.3312 -1.1634 16 6 6.1948 1.1949 -2.5996 17 16 8.0088 1.1951 -2.6003 18 8 8.5079 0.0101 -1.9953 19 8 8.5074 2.4730 -2.2293 20 6 8.4478 1.0330 -4.2991 21 6 8.6198 2.1613 -5.0791 22 6 8.9697 2.0342 -6.4104 23 6 9.1425 0.7789 -6.9630 24 6 9.5235 0.6404 -8.4144 25 6 8.9649 -0.3494 -6.1843 26 6 8.6154 -0.2223 -4.8529 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8901 34 1 2.4428 3.8181 2.6707 35 1 6.0487 0.4939 -0.5675 36 1 6.0491 2.2659 -0.7365 37 1 5.8315 2.0325 -3.1950 38 1 5.8310 0.2604 -3.0270 39 1 8.4856 3.1420 -4.6473 40 1 9.1086 2.9158 -7.0188 41 1 10.6097 0.6301 -8.5056 42 1 9.1168 -0.2904 -8.8096 43 1 9.1197 1.4817 -8.9779 44 1 9.0995 -1.3301 -6.6161 45 1 8.4769 -1.1039 -4.2446 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338179177.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:27 Heat of formation + Delta-G solvation = -111.354118 kcal Electronic energy + Delta-G solvation = -27047.800907 eV Core-core repulsion = 23156.522565 eV Total energy + Delta-G solvation = -3891.278343 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.58929 -40.30349 -38.21807 -37.15104 -37.06569 -34.73051 -34.00264 -33.89988 -33.06191 -32.04681 -28.31142 -27.91129 -26.93979 -25.01166 -23.87210 -22.87011 -22.32951 -21.01742 -20.06230 -19.25642 -18.42076 -18.04364 -17.36585 -16.93159 -16.63752 -16.38320 -16.27856 -16.11203 -15.83496 -15.41282 -15.37625 -14.78147 -14.75769 -14.56741 -14.52496 -13.98040 -13.56202 -13.31098 -13.26111 -13.21576 -13.16867 -13.13720 -13.09688 -13.07385 -12.93322 -12.63009 -12.44171 -12.37596 -12.10426 -12.05919 -11.98908 -11.92903 -11.57852 -11.53011 -11.01877 -10.43094 -10.06547 -10.05540 -9.52641 -8.34128 -6.07721 -1.01727 -0.20280 0.30111 1.39981 1.49110 1.61313 1.87586 1.96299 2.29654 2.38112 2.77400 2.98328 3.08458 3.10733 3.54685 3.72033 3.86266 3.87993 3.94810 4.11705 4.22328 4.31116 4.34550 4.35032 4.50321 4.59035 4.64768 4.66306 4.70580 4.80800 4.82801 4.90227 4.97090 5.00725 5.08473 5.09117 5.09433 5.21578 5.24491 5.35682 5.44161 5.47600 5.56584 5.88026 5.96898 6.39171 7.08243 7.53564 7.96524 8.68159 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015953 B = 0.002859 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.731060 B = 9790.064641 C =10810.418043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.126 4.126 3 C 0.113 3.887 4 N -0.448 5.448 5 C -0.365 4.365 6 H 0.102 0.898 7 C 0.006 3.994 8 N -0.886 5.886 9 Si 0.978 3.022 10 H -0.257 1.257 11 H -0.280 1.280 12 H -0.275 1.275 13 C 0.460 3.540 14 O -0.627 6.627 15 C -0.120 4.120 16 C -0.571 4.571 17 S 2.514 3.486 18 O -0.964 6.964 19 O -0.967 6.967 20 C -0.672 4.672 21 C -0.038 4.038 22 C -0.149 4.149 23 C -0.035 4.035 24 C -0.121 4.121 25 C -0.148 4.148 26 C -0.036 4.036 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.042 0.958 31 H 0.056 0.944 32 H 0.095 0.905 33 H 0.032 0.968 34 H 0.274 0.726 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.143 0.857 38 H 0.149 0.851 39 H 0.145 0.855 40 H 0.157 0.843 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.159 0.841 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.548 -5.684 -14.797 18.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.164 4.164 3 C -0.010 4.010 4 N -0.165 5.165 5 C -0.493 4.493 6 H 0.120 0.880 7 C -0.198 4.198 8 N -0.523 5.523 9 Si 0.801 3.199 10 H -0.180 1.180 11 H -0.205 1.205 12 H -0.200 1.200 13 C 0.249 3.751 14 O -0.516 6.516 15 C -0.161 4.161 16 C -0.701 4.701 17 S 2.698 3.302 18 O -0.961 6.961 19 O -0.964 6.964 20 C -0.762 4.762 21 C -0.057 4.057 22 C -0.167 4.167 23 C -0.035 4.035 24 C -0.177 4.177 25 C -0.167 4.167 26 C -0.055 4.055 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.113 0.887 33 H 0.051 0.949 34 H 0.084 0.916 35 H 0.126 0.874 36 H 0.120 0.880 37 H 0.161 0.839 38 H 0.167 0.833 39 H 0.163 0.837 40 H 0.175 0.825 41 H 0.108 0.892 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.176 0.824 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.706 -5.510 -14.472 18.276 hybrid contribution -0.478 0.239 0.395 0.665 sum 9.228 -5.271 -14.077 17.638 Atomic orbital electron populations 1.21610 0.93639 1.02370 1.01725 1.21736 0.97283 0.96791 1.00615 1.21471 0.81161 0.96468 1.01928 1.43770 1.05475 1.61828 1.05401 1.19884 1.08324 1.30177 0.90874 0.88016 1.26163 0.96790 0.92783 1.04047 1.70039 1.30943 1.16803 1.34472 0.85112 0.78617 0.78691 0.77464 1.18014 1.20540 1.20005 1.20589 0.90086 0.81075 0.83360 1.90480 1.71000 1.57779 1.32332 1.21166 0.94830 1.05674 0.94413 1.29996 1.22091 1.13762 1.04247 1.04640 0.77301 0.73532 0.74703 1.93506 1.78032 1.48942 1.75621 1.93513 1.78115 1.42490 1.82296 1.30232 1.20789 1.00882 1.24253 1.21229 0.92361 0.97603 0.94472 1.21541 1.01566 0.98792 0.94841 1.20739 0.92013 0.92887 0.97905 1.21015 1.03050 1.04505 0.89156 1.21551 1.01492 1.00300 0.93319 1.21239 0.92259 0.95626 0.96351 0.90869 0.92592 0.92913 0.93903 0.92530 0.88738 0.94946 0.91620 0.87443 0.88000 0.83853 0.83336 0.83682 0.82535 0.89165 0.89732 0.89840 0.82367 0.83371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.38 9.91 71.98 0.71 -3.67 16 2 C -0.13 -5.11 6.22 30.60 0.19 -4.92 16 3 C 0.11 5.49 4.90 86.38 0.42 5.91 16 4 N -0.45 -22.66 2.56 -635.53 -1.63 -24.29 16 5 C -0.37 -18.31 8.70 84.04 0.73 -17.58 16 6 H 0.10 4.79 6.97 -2.91 -0.02 4.77 16 7 C 0.01 0.30 4.92 84.93 0.42 0.72 16 8 N -0.89 -46.37 11.34 21.66 0.25 -46.12 16 9 Si 0.98 38.94 29.61 68.60 2.03 40.98 16 10 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 11 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 12 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 13 C 0.46 22.27 7.60 87.66 0.67 22.94 16 14 O -0.63 -32.35 15.65 -3.07 -0.05 -32.40 16 15 C -0.12 -4.72 4.36 29.85 0.13 -4.59 16 16 C -0.57 -17.98 5.27 71.98 0.38 -17.60 16 17 S 2.51 75.21 5.16 -56.49 -0.29 74.92 16 18 O -0.96 -32.75 17.13 -127.65 -2.19 -34.94 16 19 O -0.97 -34.02 17.13 -127.65 -2.19 -36.21 16 20 C -0.67 -17.12 5.66 22.27 0.13 -16.99 16 21 C -0.04 -0.87 9.47 22.27 0.21 -0.66 16 22 C -0.15 -2.67 9.70 22.27 0.22 -2.46 16 23 C -0.04 -0.56 5.88 -19.86 -0.12 -0.68 16 24 C -0.12 -1.03 10.01 71.24 0.71 -0.32 16 25 C -0.15 -2.58 9.70 22.27 0.22 -2.37 16 26 C -0.04 -0.80 9.47 22.27 0.21 -0.59 16 27 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 28 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.09 4.83 5.35 -2.39 -0.01 4.82 16 33 H 0.03 1.65 7.59 -2.38 -0.02 1.63 16 34 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 35 H 0.11 3.89 7.65 -2.39 -0.02 3.87 16 36 H 0.10 4.00 8.10 -2.39 -0.02 3.98 16 37 H 0.14 4.33 8.10 -2.39 -0.02 4.31 16 38 H 0.15 4.27 8.10 -2.39 -0.02 4.25 16 39 H 0.15 3.13 7.57 -2.91 -0.02 3.11 16 40 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 41 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 42 H 0.08 0.55 8.08 -2.39 -0.02 0.53 16 43 H 0.08 0.56 8.09 -2.39 -0.02 0.54 16 44 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 45 H 0.15 2.99 7.58 -2.91 -0.02 2.97 16 Total: -1.00 -71.53 388.12 2.14 -69.39 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: 0.98 Total: 31.54 kcal Atomic # 6 Polarization: -48.09 SS G_CDS: 5.23 Total: -42.86 kcal Atomic # 7 Polarization: -69.03 SS G_CDS: -1.38 Total: -70.41 kcal Atomic # 8 Polarization: -99.13 SS G_CDS: -4.42 Total: -103.55 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.98 kcal Atomic # 16 Polarization: 75.21 SS G_CDS: -0.29 Total: 74.92 kcal Total: -71.53 2.14 -69.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338179177.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.963 kcal (2) G-P(sol) polarization free energy of solvation -71.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds