Wall clock time and date at job start Sat Apr 11 2020 05:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47287 * 2 1 4 4 C 1.53010 * 109.46820 * 119.99905 * 2 1 3 5 5 S 1.81393 * 109.47202 * 64.99926 * 4 2 1 6 6 O 1.42098 * 108.58121 * 65.50984 * 5 4 2 7 7 O 1.42101 * 108.57749 * 294.48760 * 5 4 2 8 8 C 1.81395 * 101.92174 * 179.97438 * 5 4 2 9 9 C 1.53004 * 109.47267 * 179.97438 * 8 5 4 10 10 C 1.50693 * 109.47130 * 179.97438 * 9 8 5 11 11 O 1.21281 * 120.00369 * 0.02562 * 10 9 8 12 12 N 1.34786 * 120.00039 * 179.97438 * 10 9 8 13 13 C 1.39120 * 119.99860 * 184.37270 * 12 10 9 14 14 C 1.38647 * 120.28887 * 325.34680 * 13 12 10 15 15 C 1.38223 * 120.03661 * 180.26219 * 14 13 12 16 16 C 1.38864 * 120.61570 * 359.73851 * 15 14 13 17 17 C 1.36475 * 120.57506 * 0.02562 * 16 15 14 18 18 C 1.40732 * 119.94463 * 359.97438 * 17 16 15 19 19 C 1.41067 * 120.30097 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00158 * 154.83018 * 19 18 17 21 21 C 1.39960 * 120.00035 * 334.81866 * 19 18 17 22 22 N 1.30850 * 120.00172 * 334.82627 * 21 19 18 23 23 Si 1.86797 * 119.99964 * 154.81633 * 21 19 18 24 24 H 1.48493 * 109.47433 * 180.02562 * 23 21 19 25 25 H 1.48507 * 109.47399 * 300.00688 * 23 21 19 26 26 H 1.48501 * 109.46727 * 60.00450 * 23 21 19 27 27 H 1.09004 * 109.47097 * 300.00456 * 1 2 3 28 28 H 1.08995 * 109.47063 * 60.00048 * 1 2 3 29 29 H 1.09001 * 109.47356 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47097 * 239.99543 * 2 1 3 31 31 H 1.09001 * 109.47517 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47540 * 299.99946 * 3 2 1 33 33 H 1.09004 * 109.47425 * 59.99744 * 3 2 1 34 34 H 1.09000 * 109.46703 * 304.99772 * 4 2 1 35 35 H 1.09002 * 109.46493 * 184.99725 * 4 2 1 36 36 H 1.09001 * 109.47384 * 60.00326 * 8 5 4 37 37 H 1.09001 * 109.47241 * 299.99398 * 8 5 4 38 38 H 1.09004 * 109.46955 * 59.99840 * 9 8 5 39 39 H 1.08999 * 109.47357 * 300.00231 * 9 8 5 40 40 H 0.96996 * 119.99503 * 4.37567 * 12 10 9 41 41 H 1.08002 * 119.97971 * 359.97438 * 14 13 12 42 42 H 1.07995 * 119.69606 * 179.76870 * 15 14 13 43 43 H 1.07997 * 119.71651 * 180.02562 * 16 15 14 44 44 H 1.08000 * 120.02277 * 180.02562 * 17 16 15 45 45 H 0.97005 * 119.99936 * 354.62807 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2494 5 16 1.5600 -2.4691 1.1767 6 8 2.2380 -3.0799 0.0875 7 8 0.1432 -2.5528 1.2469 8 6 2.2550 -3.1131 2.7236 9 6 1.9431 -4.6064 2.8401 10 6 2.5210 -5.1415 4.1248 11 8 3.1227 -4.4013 4.8739 12 7 2.3684 -6.4426 4.4421 13 6 2.8217 -6.9173 5.6687 14 6 3.9695 -6.3909 6.2413 15 6 4.4182 -6.8702 7.4577 16 6 3.7263 -7.8753 8.1206 17 6 2.5910 -8.4080 7.5821 18 6 2.1127 -7.9379 6.3449 19 6 0.9403 -8.4835 5.7812 20 1 0.3513 -7.8995 5.0896 21 6 0.5406 -9.7818 6.1180 22 7 1.4270 -10.6548 6.5235 23 14 -1.2582 -10.2684 5.9889 24 1 -1.4183 -11.6862 6.4001 25 1 -2.0709 -9.4005 6.8787 26 1 -1.7156 -10.1048 4.5856 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6053 -0.2617 2.1370 35 1 3.1263 -0.6444 1.2952 36 1 1.8144 -2.5833 3.5682 37 1 3.3350 -2.9659 2.7257 38 1 2.3834 -5.1365 1.9955 39 1 0.8631 -4.7533 2.8381 40 1 1.9425 -7.0479 3.8151 41 1 4.5158 -5.6092 5.7344 42 1 5.3150 -6.4588 7.8969 43 1 4.0897 -8.2386 9.0704 44 1 2.0597 -9.1891 8.1056 45 1 2.3700 -10.4275 6.5167 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344340420.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:35 Heat of formation + Delta-G solvation = -108.319114 kcal Electronic energy + Delta-G solvation = -26780.179185 eV Core-core repulsion = 22889.032450 eV Total energy + Delta-G solvation = -3891.146735 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.75752 -37.54399 -37.23959 -36.84236 -36.10957 -34.08592 -33.85132 -33.17713 -29.41615 -28.82970 -28.34920 -27.57294 -25.52998 -24.72542 -21.67566 -21.03762 -20.71828 -19.54350 -19.09723 -18.08797 -17.57658 -16.72339 -16.49146 -16.42343 -15.73318 -15.55579 -15.02532 -14.79123 -14.39632 -14.24561 -14.00028 -13.78949 -13.63358 -13.12552 -12.93528 -12.81110 -12.62841 -12.54721 -12.43815 -12.30619 -12.18359 -12.04039 -11.80054 -11.67944 -11.43963 -11.42802 -11.28714 -11.09016 -11.05970 -10.74456 -10.46302 -10.44981 -10.38024 -9.75409 -9.42408 -9.12370 -8.93858 -7.67483 -7.43870 -7.02820 -4.53147 -0.29261 2.47950 2.49239 2.75169 3.10689 3.17316 3.22157 3.27763 3.30832 3.75233 3.82006 3.94081 4.09147 4.27614 4.31320 4.49779 4.53614 4.62678 4.86272 5.03189 5.06350 5.12279 5.24850 5.36565 5.37525 5.42477 5.46550 5.50854 5.63141 5.65480 5.79028 5.96355 6.15673 6.27153 6.42982 6.76226 6.89598 7.08627 7.33223 7.45831 7.66118 7.71094 7.85939 7.96478 8.16819 8.26359 8.60592 8.71430 8.87204 9.95378 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015932 B = 0.002561 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.066449 B =10932.530819 C =12270.836821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.083 4.083 3 C -0.141 4.141 4 C -0.609 4.609 5 S 2.414 3.586 6 O -0.938 6.938 7 O -0.932 6.932 8 C -0.591 4.591 9 C -0.133 4.133 10 C 0.505 3.495 11 O -0.540 6.540 12 N -0.633 5.633 13 C 0.002 3.998 14 C -0.072 4.072 15 C -0.242 4.242 16 C -0.091 4.091 17 C -0.208 4.208 18 C 0.091 3.909 19 C -0.525 4.525 20 H 0.075 0.925 21 C 0.041 3.959 22 N -0.792 5.792 23 Si 1.064 2.936 24 H -0.274 1.274 25 H -0.275 1.275 26 H -0.275 1.275 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.404 0.596 41 H 0.110 0.890 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.109 0.891 45 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.739 16.351 -11.508 20.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.103 4.103 3 C -0.199 4.199 4 C -0.738 4.738 5 S 2.597 3.403 6 O -0.935 6.935 7 O -0.929 6.929 8 C -0.720 4.720 9 C -0.174 4.174 10 C 0.290 3.710 11 O -0.418 6.418 12 N -0.275 5.275 13 C -0.092 4.092 14 C -0.092 4.092 15 C -0.262 4.262 16 C -0.109 4.109 17 C -0.228 4.228 18 C 0.087 3.913 19 C -0.553 4.553 20 H 0.093 0.907 21 C -0.182 4.182 22 N -0.415 5.415 23 Si 0.887 3.113 24 H -0.198 1.198 25 H -0.200 1.200 26 H -0.200 1.200 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.240 0.760 41 H 0.128 0.872 42 H 0.110 0.890 43 H 0.109 0.891 44 H 0.127 0.873 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.835 15.135 -11.369 19.018 hybrid contribution 1.453 1.471 0.278 2.086 sum -0.382 16.605 -11.091 19.972 Atomic orbital electron populations 1.22369 0.93743 1.04900 1.03073 1.20849 0.96869 0.97709 0.94862 1.21811 1.01210 0.94523 1.02397 1.30407 1.12056 1.23750 1.07590 1.08203 0.76326 0.78198 0.77549 1.93591 1.76214 1.74089 1.49607 1.93576 1.27261 1.85582 1.86528 1.30086 1.14446 1.05589 1.21899 1.21330 1.04182 0.92718 0.99196 1.20138 0.81120 0.82363 0.87343 1.90636 1.41983 1.57518 1.51673 1.42815 1.58342 1.08429 1.17940 1.17590 0.97064 1.06097 0.88441 1.20686 0.94127 0.98469 0.95884 1.20257 1.03148 1.04035 0.98790 1.20408 0.95957 0.96449 0.98119 1.20759 0.99528 1.05748 0.96766 1.17492 0.91403 0.91746 0.90643 1.20350 1.07546 1.01177 1.26190 0.90666 1.26994 1.07022 0.92744 0.91447 1.70472 1.05798 1.36084 1.29160 0.83645 0.72594 0.77167 0.77874 1.19822 1.20001 1.20044 0.91620 0.91520 0.89885 0.89623 0.92272 0.91944 0.92186 0.84689 0.84792 0.84176 0.84310 0.87521 0.87244 0.76012 0.87178 0.89007 0.89143 0.87316 0.88570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.43 8.83 37.16 0.33 -1.11 16 2 C -0.08 -0.60 2.92 -90.62 -0.26 -0.86 16 3 C -0.14 -0.81 9.19 37.15 0.34 -0.47 16 4 C -0.61 -3.91 5.26 37.16 0.20 -3.71 16 5 S 2.41 22.79 4.51 -107.50 -0.49 22.30 16 6 O -0.94 -11.75 18.10 -57.83 -1.05 -12.80 16 7 O -0.93 -11.33 15.46 -57.83 -0.89 -12.22 16 8 C -0.59 -6.01 5.09 37.16 0.19 -5.82 16 9 C -0.13 -1.71 5.71 -27.88 -0.16 -1.87 16 10 C 0.51 9.11 7.67 -10.98 -0.08 9.02 16 11 O -0.54 -11.24 13.40 5.56 0.07 -11.16 16 12 N -0.63 -12.58 4.90 -9.48 -0.05 -12.62 16 13 C 0.00 0.04 6.33 -83.17 -0.53 -0.49 16 14 C -0.07 -1.69 8.69 -39.44 -0.34 -2.03 16 15 C -0.24 -5.53 10.04 -39.36 -0.39 -5.93 16 16 C -0.09 -2.09 9.97 -39.99 -0.40 -2.49 16 17 C -0.21 -5.20 7.87 -39.28 -0.31 -5.51 16 18 C 0.09 2.31 5.32 -106.65 -0.57 1.74 16 19 C -0.52 -12.93 8.35 -37.86 -0.32 -13.24 16 20 H 0.08 1.76 7.39 -52.49 -0.39 1.37 16 21 C 0.04 0.97 4.95 -17.33 -0.09 0.89 16 22 N -0.79 -20.05 12.32 55.55 0.68 -19.36 16 23 Si 1.06 20.59 30.00 -169.99 -5.10 15.49 16 24 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 25 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 26 H -0.28 -5.00 7.11 56.52 0.40 -4.60 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.79 5.40 -51.93 -0.28 0.51 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.13 0.63 8.14 -51.92 -0.42 0.21 16 35 H 0.13 0.59 8.14 -51.92 -0.42 0.17 16 36 H 0.14 1.31 8.10 -51.92 -0.42 0.89 16 37 H 0.14 1.25 8.10 -51.92 -0.42 0.83 16 38 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.40 7.17 7.95 -40.82 -0.32 6.85 16 41 H 0.11 2.54 6.20 -52.49 -0.33 2.21 16 42 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 43 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 44 H 0.11 2.78 6.45 -52.49 -0.34 2.44 16 45 H 0.30 7.82 6.62 -40.82 -0.27 7.55 16 LS Contribution 379.95 15.07 5.73 5.73 Total: -1.00 -33.38 379.95 -10.12 -43.50 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -6.64 Total: 13.02 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: -2.39 Total: -31.87 kcal Atomic # 7 Polarization: -32.63 SS G_CDS: 0.64 Total: -31.99 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -1.87 Total: -36.18 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.10 Total: 15.49 kcal Atomic # 16 Polarization: 22.79 SS G_CDS: -0.49 Total: 22.30 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.38 -10.12 -43.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344340420.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.819 kcal (2) G-P(sol) polarization free energy of solvation -33.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds