Wall clock time and date at job start Sat Apr 11 2020 05:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46926 * 2 1 4 4 C 1.50698 * 109.46858 * 239.99864 * 2 1 3 5 5 H 1.08008 * 119.99422 * 240.83009 * 4 2 1 6 6 C 1.37874 * 120.00212 * 60.83633 * 4 2 1 7 7 N 1.31519 * 120.00000 * 194.57306 * 6 4 2 8 8 Si 1.86795 * 119.99820 * 14.57806 * 6 4 2 9 9 H 1.48501 * 109.47606 * 84.45444 * 8 6 4 10 10 H 1.48507 * 109.46723 * 204.45439 * 8 6 4 11 11 H 1.48503 * 109.47162 * 324.45122 * 8 6 4 12 12 C 1.52997 * 109.46976 * 119.99832 * 2 1 3 13 13 S 1.81405 * 109.47297 * 299.99663 * 12 2 1 14 14 O 1.42096 * 110.54345 * 291.63027 * 13 12 2 15 15 O 1.42104 * 110.53677 * 68.37886 * 13 12 2 16 16 N 1.65604 * 104.45102 * 179.97438 * 13 12 2 17 17 C 1.46498 * 119.99524 * 65.00399 * 16 13 12 18 18 C 1.53000 * 109.47091 * 164.99817 * 17 16 13 19 19 H 1.08993 * 110.66771 * 305.70384 * 18 17 16 20 20 C 1.54707 * 110.75131 * 182.48060 * 18 17 16 21 21 C 1.51941 * 101.79212 * 216.51614 * 20 18 17 22 22 C 1.37736 * 132.09850 * 195.83391 * 21 20 18 23 23 C 1.38346 * 119.97433 * 178.84966 * 22 21 20 24 24 C 1.38283 * 119.76949 * 359.97438 * 23 22 21 25 25 C 1.37934 * 120.34947 * 0.19593 * 24 23 22 26 26 C 1.38878 * 107.10390 * 15.14171 * 21 20 18 27 27 O 1.36131 * 111.23533 * 1.23744 * 26 21 20 28 28 H 1.09009 * 109.47278 * 310.23352 * 1 2 3 29 29 H 1.08998 * 109.47453 * 70.23772 * 1 2 3 30 30 H 1.09003 * 109.47063 * 190.23920 * 1 2 3 31 31 H 1.09001 * 109.46930 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46830 * 299.99484 * 3 2 1 33 33 H 1.08994 * 109.47175 * 60.00142 * 3 2 1 34 34 H 0.96998 * 119.99946 * 179.97438 * 7 6 4 35 35 H 1.09002 * 109.47124 * 180.02562 * 12 2 1 36 36 H 1.09002 * 109.47515 * 59.99959 * 12 2 1 37 37 H 0.96998 * 120.00333 * 245.00245 * 16 13 12 38 38 H 1.09001 * 109.47241 * 284.99738 * 17 16 13 39 39 H 1.08997 * 109.47520 * 44.99620 * 17 16 13 40 40 H 1.09001 * 110.93936 * 334.56141 * 20 18 17 41 41 H 1.09002 * 110.93498 * 98.23783 * 20 18 17 42 42 H 1.08002 * 120.01496 * 358.86729 * 22 21 20 43 43 H 1.08006 * 120.11750 * 179.97438 * 23 22 21 44 44 H 1.08003 * 119.83011 * 180.21803 * 24 23 22 45 45 H 1.07995 * 119.87743 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2304 5 1 2.6421 -1.5964 -1.1313 6 6 1.7134 -0.2295 -2.4826 7 7 1.8969 -0.9849 -3.5435 8 14 1.0211 1.4951 -2.6723 9 1 2.1370 2.4736 -2.7241 10 1 0.2327 1.5765 -3.9281 11 1 0.1433 1.8061 -1.5156 12 6 2.0399 -0.7212 1.2492 13 16 1.4353 0.1340 2.7304 14 8 2.0479 1.4102 2.8543 15 8 0.0279 -0.0182 2.8544 16 7 2.0529 -0.7407 3.9937 17 6 3.5013 -0.7980 4.2060 18 6 3.7902 -1.3344 5.6095 19 1 3.2654 -0.7458 6.3618 20 6 5.3119 -1.3490 5.8883 21 6 5.4648 -2.6175 6.7105 22 6 6.4836 -3.0800 7.5138 23 6 6.3467 -4.2857 8.1783 24 6 5.1851 -5.0217 8.0330 25 6 4.1650 -4.5620 7.2263 26 6 4.2969 -3.3516 6.5499 27 8 3.4313 -2.7231 5.7079 28 1 -0.3634 0.6638 0.7846 29 1 -0.3634 0.3475 -0.9671 30 1 -0.3633 -1.0113 0.1827 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9563 0.8899 34 1 1.6722 -0.6466 -4.4244 35 1 3.1300 -0.7208 1.2495 36 1 1.6766 -1.7489 1.2493 37 1 1.4557 -1.2150 4.5931 38 1 3.9513 -1.4585 3.4649 39 1 3.9232 0.2019 4.1053 40 1 5.8775 -1.4173 4.9590 41 1 5.6113 -0.4713 6.4612 42 1 7.3888 -2.5016 7.6250 43 1 7.1443 -4.6508 8.8085 44 1 5.0757 -5.9614 8.5541 45 1 3.2610 -5.1429 7.1186 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451041725.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:25 Heat of formation + Delta-G solvation = -60.373530 kcal Electronic energy + Delta-G solvation = -27561.516802 eV Core-core repulsion = 23672.449144 eV Total energy + Delta-G solvation = -3889.067658 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.46117 -37.93126 -36.75726 -36.72911 -35.57876 -35.28306 -32.94429 -31.95651 -30.33315 -29.94510 -27.44111 -26.38858 -25.85941 -25.01524 -22.87319 -22.12941 -21.87375 -19.93473 -18.85250 -17.87094 -17.54711 -17.07226 -16.92975 -16.17780 -15.93321 -15.55781 -15.27182 -15.08963 -14.61732 -14.46370 -14.02960 -13.53664 -13.43364 -13.42807 -13.23530 -13.04066 -12.88670 -12.74021 -12.51079 -12.43153 -12.11775 -12.05284 -11.63619 -11.56966 -11.40541 -11.16278 -11.11990 -11.07034 -11.00909 -10.78029 -10.18361 -10.07389 -10.05620 -9.51730 -9.22324 -9.02163 -8.75671 -8.48218 -8.45049 -6.20093 -4.17567 0.66198 0.96038 1.06185 2.79175 3.05469 3.24576 3.33756 3.38202 3.38999 3.97350 4.10439 4.17335 4.33337 4.44839 4.57606 4.61076 4.68752 4.74465 4.91181 5.05526 5.09039 5.16474 5.18167 5.27083 5.33184 5.42019 5.51077 5.54490 5.69202 5.76748 5.98038 5.99121 6.08957 6.15628 6.19259 6.30054 6.30463 6.43189 6.48311 6.68515 6.85929 6.88396 6.98849 7.12340 7.30594 7.61681 8.37989 8.82758 9.43783 10.92456 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021479 B = 0.002628 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.295625 B =10650.777570 C =11059.537516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.054 3.946 3 C -0.182 4.182 4 C -0.508 4.508 5 H 0.078 0.922 6 C 0.077 3.923 7 N -0.889 5.889 8 Si 0.874 3.126 9 H -0.281 1.281 10 H -0.301 1.301 11 H -0.246 1.246 12 C -0.574 4.574 13 S 2.591 3.409 14 O -0.965 6.965 15 O -0.961 6.961 16 N -1.126 6.126 17 C 0.120 3.880 18 C 0.076 3.924 19 H 0.098 0.902 20 C -0.105 4.105 21 C -0.175 4.175 22 C -0.070 4.070 23 C -0.151 4.151 24 C -0.086 4.086 25 C -0.139 4.139 26 C 0.109 3.891 27 O -0.295 6.295 28 H 0.037 0.963 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.266 0.734 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.417 0.583 38 H 0.079 0.921 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.125 0.875 43 H 0.127 0.873 44 H 0.130 0.870 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.290 -4.051 23.418 25.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.051 3.949 3 C -0.238 4.238 4 C -0.547 4.547 5 H 0.096 0.904 6 C -0.126 4.126 7 N -0.525 5.525 8 Si 0.706 3.294 9 H -0.208 1.208 10 H -0.229 1.229 11 H -0.172 1.172 12 C -0.707 4.707 13 S 2.689 3.311 14 O -0.954 6.954 15 O -0.951 6.951 16 N -0.884 5.884 17 C -0.007 4.007 18 C 0.018 3.982 19 H 0.115 0.885 20 C -0.143 4.143 21 C -0.175 4.175 22 C -0.088 4.088 23 C -0.170 4.170 24 C -0.104 4.104 25 C -0.158 4.158 26 C 0.063 3.937 27 O -0.209 6.209 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.142 0.858 36 H 0.147 0.853 37 H 0.251 0.749 38 H 0.097 0.903 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.143 0.857 43 H 0.145 0.855 44 H 0.148 0.852 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.661 -3.267 23.085 24.541 hybrid contribution -0.004 0.171 -0.328 0.370 sum 7.657 -3.095 22.757 24.209 Atomic orbital electron populations 1.22685 0.97002 1.01394 1.01760 1.18233 0.92540 0.91701 0.92382 1.22822 1.02345 0.97864 1.00811 1.20653 1.33935 1.12581 0.87519 0.90385 1.24969 0.94555 0.97309 0.95794 1.69938 1.47881 1.35776 0.98911 0.87437 0.79799 0.85661 0.76530 1.20812 1.22919 1.17175 1.30371 1.11747 1.13193 1.15419 1.05659 0.74519 0.75194 0.75767 1.93540 1.78216 1.38130 1.85562 1.93576 1.29255 1.86601 1.85702 1.55722 1.13612 1.71159 1.47908 1.21464 0.81606 1.02399 0.95251 1.23605 0.94944 0.81210 0.98403 0.88468 1.21877 0.95387 0.96365 1.00668 1.20846 0.95679 0.98657 1.02366 1.20325 0.97530 0.95905 0.95060 1.21042 0.98514 0.95344 1.02066 1.20892 0.92779 0.99496 0.97235 1.20316 1.01080 0.95456 0.98940 1.19605 0.88849 0.94354 0.90872 1.86903 1.52037 1.21687 1.60316 0.94432 0.91434 0.92289 0.91777 0.93006 0.93166 0.92407 0.85774 0.85297 0.74925 0.90282 0.87954 0.88321 0.88419 0.85738 0.85521 0.85185 0.85344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.85 6.95 37.16 0.26 -3.59 16 2 C 0.05 1.23 0.52 -155.66 -0.08 1.15 16 3 C -0.18 -4.01 7.22 37.16 0.27 -3.75 16 4 C -0.51 -13.61 8.62 -34.44 -0.30 -13.91 16 5 H 0.08 2.22 7.99 -52.48 -0.42 1.80 16 6 C 0.08 2.15 5.31 -17.82 -0.09 2.06 16 7 N -0.89 -26.44 13.96 55.43 0.77 -25.66 16 8 Si 0.87 21.47 22.79 -169.99 -3.87 17.60 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 11 H -0.25 -5.66 4.67 56.52 0.26 -5.39 16 12 C -0.57 -10.34 4.99 37.16 0.19 -10.16 16 13 S 2.59 43.37 4.50 -107.50 -0.48 42.89 16 14 O -0.96 -17.92 15.12 -57.54 -0.87 -18.78 16 15 O -0.96 -18.60 15.93 -57.54 -0.92 -19.52 16 16 N -1.13 -14.06 5.89 -10.61 -0.06 -14.12 16 17 C 0.12 1.23 5.80 -4.04 -0.02 1.21 16 18 C 0.08 0.71 3.67 -25.83 -0.09 0.61 16 19 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 20 C -0.11 -0.82 6.67 -26.37 -0.18 -0.99 16 21 C -0.17 -1.62 6.28 -103.96 -0.65 -2.28 16 22 C -0.07 -0.55 10.03 -39.72 -0.40 -0.95 16 23 C -0.15 -1.09 10.07 -39.52 -0.40 -1.49 16 24 C -0.09 -0.65 10.02 -39.68 -0.40 -1.05 16 25 C -0.14 -1.30 10.06 -39.30 -0.40 -1.69 16 26 C 0.11 1.16 7.04 -38.95 -0.27 0.89 16 27 O -0.30 -3.38 10.81 -20.16 -0.22 -3.60 16 28 H 0.04 0.79 6.21 -51.92 -0.32 0.47 16 29 H 0.07 1.57 4.32 -51.93 -0.22 1.34 16 30 H 0.06 1.26 8.11 -51.93 -0.42 0.83 16 31 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.05 1.19 2.28 -51.93 -0.12 1.07 16 33 H 0.05 1.03 5.46 -51.93 -0.28 0.75 16 34 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.12 1.97 8.14 -51.92 -0.42 1.55 16 36 H 0.13 2.17 8.14 -51.92 -0.42 1.74 16 37 H 0.42 4.71 8.62 -34.48 -0.30 4.41 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.10 0.95 7.70 -51.93 -0.40 0.56 16 40 H 0.10 0.69 7.92 -51.93 -0.41 0.28 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 44 H 0.13 0.66 8.06 -52.48 -0.42 0.23 16 45 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 359.10 15.07 5.41 5.41 Total: -1.00 -34.30 359.10 -9.21 -43.51 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -6.40 Total: 6.21 kcal Atomic # 6 Polarization: -31.36 SS G_CDS: -2.57 Total: -33.93 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.71 Total: -39.79 kcal Atomic # 8 Polarization: -39.90 SS G_CDS: -2.00 Total: -41.90 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -3.87 Total: 17.60 kcal Atomic # 16 Polarization: 43.37 SS G_CDS: -0.48 Total: 42.89 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.30 -9.21 -43.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451041725.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.863 kcal (2) G-P(sol) polarization free energy of solvation -34.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds