Wall clock time and date at job start Sat Apr 11 2020 05:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35902 * 116.99832 * 2 1 4 4 C 1.38758 * 120.05682 * 0.20721 * 3 2 1 5 5 C 1.38120 * 119.94239 * 180.27785 * 4 3 2 6 6 C 1.38289 * 120.05645 * 359.76382 * 5 4 3 7 7 C 1.38239 * 120.11204 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.97475 * 179.97438 * 7 6 5 9 9 H 1.08996 * 109.47125 * 160.01830 * 8 7 6 10 10 C 1.52998 * 109.47324 * 280.02836 * 8 7 6 11 11 N 1.46500 * 109.46841 * 40.02138 * 8 7 6 12 12 S 1.65601 * 120.00232 * 144.99750 * 11 8 7 13 13 O 1.42097 * 104.27916 * 181.07393 * 12 11 8 14 14 O 1.42104 * 104.27600 * 308.93614 * 12 11 8 15 15 C 1.81401 * 104.44621 * 65.00073 * 12 11 8 16 16 C 1.53002 * 109.47027 * 172.69104 * 15 12 11 17 17 C 1.50688 * 115.55242 * 65.16087 * 16 15 12 18 18 H 1.08005 * 120.00389 * 264.90779 * 17 16 15 19 19 C 1.37880 * 120.00217 * 84.90964 * 17 16 15 20 20 N 1.31515 * 119.99809 * 352.85235 * 19 17 16 21 21 Si 1.86796 * 120.00170 * 172.85020 * 19 17 16 22 22 H 1.48499 * 109.47221 * 60.00358 * 21 19 17 23 23 H 1.48494 * 109.47319 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47082 * 299.99985 * 21 19 17 25 25 C 1.53002 * 117.49639 * 279.48966 * 16 15 12 26 26 C 1.53005 * 117.49518 * 210.83525 * 16 15 12 27 27 C 1.38174 * 120.05682 * 0.02562 * 7 6 5 28 28 H 1.09006 * 109.47217 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47413 * 299.99953 * 1 2 3 30 30 H 1.09005 * 109.47139 * 60.00094 * 1 2 3 31 31 H 1.07998 * 120.02714 * 0.02562 * 4 3 2 32 32 H 1.07997 * 119.97264 * 179.74956 * 5 4 3 33 33 H 1.07998 * 119.94049 * 179.97438 * 6 5 4 34 34 H 1.08996 * 109.47841 * 59.99432 * 10 8 7 35 35 H 1.08998 * 109.47041 * 180.02562 * 10 8 7 36 36 H 1.09002 * 109.46638 * 299.99350 * 10 8 7 37 37 H 0.97007 * 120.00352 * 325.00483 * 11 8 7 38 38 H 1.08995 * 109.47330 * 292.68879 * 15 12 11 39 39 H 1.09000 * 109.46898 * 52.68924 * 15 12 11 40 40 H 0.96998 * 120.00029 * 185.03891 * 20 19 17 41 41 H 1.08999 * 117.50100 * 0.02562 * 25 16 15 42 42 H 1.08996 * 117.50001 * 145.02309 * 25 16 15 43 43 H 1.09002 * 117.49552 * 214.97655 * 26 16 15 44 44 H 1.08996 * 117.50040 * 359.97174 * 26 16 15 45 45 H 1.08000 * 120.02453 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3754 0.0043 5 6 1.9208 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0067 7 6 4.0559 2.5172 -0.0055 8 6 5.5607 2.5982 -0.0118 9 1 5.9768 1.6546 0.3411 10 6 6.0508 2.8714 -1.4352 11 7 5.9949 3.6839 0.8708 12 16 7.3923 3.5307 1.7461 13 8 7.4751 4.7395 2.4885 14 8 7.2601 2.2764 2.4007 15 6 8.7043 3.4607 0.4953 16 6 10.0693 3.5014 1.1853 17 6 10.3924 2.3156 2.0573 18 1 10.1996 2.3576 3.1191 19 6 10.9344 1.1770 1.4996 20 7 11.0392 1.0706 0.1930 21 14 11.5197 -0.2143 2.6000 22 1 10.3810 -0.7182 3.4089 23 1 12.0576 -1.3157 1.7616 24 1 12.5867 0.2851 3.5042 25 6 10.5972 4.8678 1.6269 26 6 11.2253 4.1560 0.4262 27 6 3.4310 1.2848 0.0003 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2127 2.3204 0.0081 32 1 1.3339 4.5114 -0.0022 33 1 3.7920 4.6381 -0.0116 34 1 5.6347 3.8150 -1.7881 35 1 7.1392 2.9295 -1.4397 36 1 5.7278 2.0636 -2.0919 37 1 5.4638 4.4924 0.9427 38 1 8.6132 2.5367 -0.0755 39 1 8.6113 4.3137 -0.1768 40 1 11.3521 0.2421 -0.2026 41 1 9.9719 5.7378 1.4264 42 1 11.1785 4.9091 2.5480 43 1 12.2196 3.7292 0.5578 44 1 11.0134 4.5573 -0.5649 45 1 4.0206 0.3800 0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451087221.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:28 Heat of formation + Delta-G solvation = -62.393552 kcal Electronic energy + Delta-G solvation = -27772.449159 eV Core-core repulsion = 23883.293906 eV Total energy + Delta-G solvation = -3889.155253 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.36136 -38.27218 -36.74887 -36.26181 -35.57686 -35.03558 -32.03084 -31.37456 -30.18308 -29.07610 -28.05288 -27.47717 -25.45644 -23.63653 -22.78138 -21.20243 -20.81987 -19.70591 -18.68528 -18.20353 -17.02864 -16.51480 -16.38231 -15.96837 -15.93205 -15.53186 -15.13660 -14.71876 -14.43221 -14.41076 -13.85997 -13.72647 -13.50163 -13.44356 -13.12209 -12.69317 -12.52986 -12.21945 -11.92701 -11.81506 -11.75326 -11.46665 -11.29725 -11.25811 -11.18508 -11.08544 -10.99607 -10.89279 -10.71765 -10.57963 -10.44576 -10.10010 -9.75250 -9.32365 -8.95864 -8.94001 -8.54667 -8.34184 -8.08311 -6.12917 -4.23669 1.01762 1.22947 1.32079 3.05207 3.34123 3.35980 3.43081 3.43540 3.66038 4.38827 4.48702 4.56522 4.61361 4.84444 4.87333 4.89708 5.02178 5.07898 5.15751 5.17202 5.19506 5.21871 5.26633 5.41745 5.43214 5.51251 5.77936 5.79726 5.86137 5.99442 6.11915 6.14047 6.19662 6.27085 6.30561 6.38051 6.54387 6.61083 6.63044 6.73570 6.99658 7.22338 7.23029 7.29252 7.40561 7.81348 8.21536 8.81635 9.47679 10.94609 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015093 B = 0.003328 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.774665 B = 8411.012845 C = 9373.621449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.127 3.873 4 C -0.212 4.212 5 C -0.079 4.079 6 C -0.147 4.147 7 C -0.037 4.037 8 C 0.185 3.815 9 H 0.106 0.894 10 C -0.174 4.174 11 N -1.126 6.126 12 S 2.605 3.395 13 O -0.973 6.973 14 O -0.949 6.949 15 C -0.554 4.554 16 C 0.044 3.956 17 C -0.518 4.518 18 H 0.067 0.933 19 C 0.083 3.917 20 N -0.874 5.874 21 Si 0.890 3.110 22 H -0.269 1.269 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.208 4.208 26 C -0.140 4.140 27 C -0.141 4.141 28 H 0.099 0.901 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.408 0.592 38 H 0.135 0.865 39 H 0.100 0.900 40 H 0.264 0.736 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.066 0.934 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.859 3.003 -6.108 20.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.082 3.918 4 C -0.231 4.231 5 C -0.098 4.098 6 C -0.166 4.166 7 C -0.039 4.039 8 C 0.077 3.923 9 H 0.124 0.876 10 C -0.232 4.232 11 N -0.882 5.882 12 S 2.702 3.298 13 O -0.964 6.964 14 O -0.939 6.939 15 C -0.687 4.687 16 C 0.042 3.958 17 C -0.555 4.555 18 H 0.086 0.914 19 C -0.122 4.122 20 N -0.509 5.509 21 Si 0.716 3.284 22 H -0.194 1.194 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.245 4.245 26 C -0.180 4.180 27 C -0.160 4.160 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.242 0.758 38 H 0.153 0.847 39 H 0.119 0.881 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.085 0.915 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -18.529 2.480 -5.307 19.433 hybrid contribution -0.085 -0.289 -0.293 0.420 sum -18.614 2.191 -5.600 19.561 Atomic orbital electron populations 1.23039 0.78546 1.03871 1.01235 1.86090 1.21239 1.26954 1.88747 1.18961 0.92192 0.84140 0.96476 1.21203 0.99854 0.92461 1.09612 1.20882 0.94430 0.96952 0.97498 1.20849 0.93637 0.98154 1.03953 1.19731 0.95057 0.92519 0.96595 1.19673 0.90334 0.91419 0.90859 0.87626 1.22441 1.02828 1.02722 0.95241 1.56161 1.43013 1.26398 1.62659 1.05228 0.74299 0.74226 0.76055 1.93504 1.86265 1.47666 1.68949 1.93543 1.84611 1.44159 1.71575 1.30073 1.14251 1.09376 1.15013 1.18262 0.87884 0.91534 0.98154 1.20495 1.43572 0.97579 0.93849 0.91445 1.24936 0.94070 0.98157 0.95022 1.69962 1.45116 1.26297 1.09575 0.86667 0.79575 0.81314 0.80799 1.19421 1.21104 1.19915 1.23192 1.05739 0.96094 0.99519 1.22547 0.99116 1.03082 0.93226 1.20331 0.91431 0.98386 1.05852 0.88297 0.92696 0.92751 0.85657 0.85748 0.85746 0.91768 0.90667 0.91096 0.75808 0.84681 0.88117 0.92674 0.90705 0.89572 0.89597 0.91541 0.84620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.60 10.50 -19.43 -0.20 -3.80 16 3 C 0.13 1.53 6.69 -39.22 -0.26 1.27 16 4 C -0.21 -2.16 9.04 -39.43 -0.36 -2.51 16 5 C -0.08 -0.79 10.04 -39.61 -0.40 -1.19 16 6 C -0.15 -1.64 9.15 -39.56 -0.36 -2.00 16 7 C -0.04 -0.48 4.95 -104.64 -0.52 -1.00 16 8 C 0.18 2.55 3.01 -69.08 -0.21 2.35 16 9 H 0.11 1.60 7.34 -51.93 -0.38 1.22 16 10 C -0.17 -2.05 9.46 37.16 0.35 -1.70 16 11 N -1.13 -16.86 5.31 -5.88 -0.03 -16.89 16 12 S 2.60 52.50 5.16 -107.50 -0.55 51.94 16 13 O -0.97 -21.43 18.08 -57.54 -1.04 -22.47 16 14 O -0.95 -22.76 17.12 -57.54 -0.98 -23.75 16 15 C -0.55 -11.32 4.82 37.16 0.18 -11.14 16 16 C 0.04 1.06 1.33 -155.66 -0.21 0.85 16 17 C -0.52 -14.11 8.23 -34.45 -0.28 -14.39 16 18 H 0.07 1.88 7.82 -52.48 -0.41 1.47 16 19 C 0.08 2.26 5.38 -17.82 -0.10 2.16 16 20 N -0.87 -23.71 12.96 55.43 0.72 -22.99 16 21 Si 0.89 21.33 29.55 -169.99 -5.02 16.30 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 C -0.21 -4.55 9.96 -26.69 -0.27 -4.82 16 26 C -0.14 -3.17 9.47 -26.69 -0.25 -3.42 16 27 C -0.14 -1.83 9.61 -39.43 -0.38 -2.21 16 28 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.33 7.65 -51.93 -0.40 -0.07 16 30 H 0.05 0.31 7.67 -51.93 -0.40 -0.09 16 31 H 0.13 0.96 6.30 -52.49 -0.33 0.63 16 32 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.12 1.18 6.81 -52.49 -0.36 0.82 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.95 6.02 -51.93 -0.31 0.64 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.41 5.14 7.04 -34.47 -0.24 4.90 16 38 H 0.14 2.83 7.26 -51.93 -0.38 2.45 16 39 H 0.10 1.71 8.09 -51.92 -0.42 1.29 16 40 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 41 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 42 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 43 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 44 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 45 H 0.14 1.70 8.04 -52.49 -0.42 1.28 16 LS Contribution 384.36 15.07 5.79 5.79 Total: -1.00 -33.69 384.36 -9.96 -43.65 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -6.57 Total: 8.77 kcal Atomic # 6 Polarization: -34.50 SS G_CDS: -2.07 Total: -36.56 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.69 Total: -39.88 kcal Atomic # 8 Polarization: -47.79 SS G_CDS: -2.23 Total: -50.02 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 52.50 SS G_CDS: -0.55 Total: 51.94 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.69 -9.96 -43.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451087221.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.739 kcal (2) G-P(sol) polarization free energy of solvation -33.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds