Wall clock time and date at job start Sat Apr 11 2020 05:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46941 * 2 1 4 4 C 1.53007 * 109.46795 * 240.00692 * 2 1 3 5 5 C 1.50701 * 109.46705 * 175.00278 * 4 2 1 6 6 C 1.38281 * 119.97476 * 89.99945 * 5 4 2 7 7 C 1.38243 * 120.11258 * 180.02562 * 6 5 4 8 8 C 1.38164 * 120.05720 * 0.02635 * 7 6 5 9 9 C 1.38719 * 119.94162 * 359.97002 * 8 7 6 10 10 O 1.35902 * 120.05287 * 179.97438 * 9 8 7 11 11 C 1.38126 * 119.96887 * 270.26956 * 5 4 2 12 12 N 1.46493 * 109.46942 * 120.00789 * 2 1 3 13 13 S 1.65601 * 119.99664 * 264.99664 * 12 2 1 14 14 O 1.42099 * 104.27636 * 181.07594 * 13 12 2 15 15 O 1.42105 * 104.27925 * 308.92863 * 13 12 2 16 16 C 1.81395 * 104.45269 * 65.00356 * 13 12 2 17 17 C 1.52993 * 109.47705 * 172.69198 * 16 13 12 18 18 C 1.50702 * 115.55168 * 65.15667 * 17 16 13 19 19 H 1.08000 * 119.99988 * 264.90728 * 18 17 16 20 20 C 1.37872 * 119.99858 * 84.90894 * 18 17 16 21 21 N 1.31514 * 120.00360 * 352.83056 * 20 18 17 22 22 Si 1.86802 * 120.00083 * 172.83821 * 20 18 17 23 23 H 1.48502 * 109.46798 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47578 * 119.99526 * 22 20 18 25 25 H 1.48498 * 109.47075 * 239.99990 * 22 20 18 26 26 C 1.53003 * 117.49755 * 279.49137 * 17 16 13 27 27 C 1.52995 * 117.50123 * 210.83225 * 17 16 13 28 28 H 1.09003 * 109.47052 * 59.99655 * 1 2 3 29 29 H 1.08995 * 109.46878 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47077 * 299.99524 * 1 2 3 31 31 H 1.08993 * 109.47202 * 54.99761 * 4 2 1 32 32 H 1.09003 * 109.46666 * 294.99595 * 4 2 1 33 33 H 1.07999 * 119.94677 * 0.04262 * 6 5 4 34 34 H 1.08001 * 119.97354 * 179.97438 * 7 6 5 35 35 H 1.08000 * 120.03406 * 179.97438 * 8 7 6 36 36 H 0.96690 * 113.99970 * 90.00447 * 10 9 8 37 37 H 1.08001 * 120.02601 * 0.02562 * 11 5 4 38 38 H 0.97003 * 120.00648 * 85.00319 * 12 2 1 39 39 H 1.09003 * 109.47120 * 292.69365 * 16 13 12 40 40 H 1.08996 * 109.47112 * 52.68641 * 16 13 12 41 41 H 0.96994 * 120.00544 * 185.03350 * 21 20 18 42 42 H 1.09004 * 117.49664 * 359.97438 * 26 17 16 43 43 H 1.08998 * 117.50216 * 145.01667 * 26 17 16 44 44 H 1.09001 * 117.50056 * 214.97541 * 27 17 16 45 45 H 1.09002 * 117.50055 * 359.97189 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 6 4.3288 -1.5822 -0.7152 7 6 5.7069 -1.4872 -0.7712 8 6 6.3013 -0.4247 -1.4243 9 6 5.5141 0.5470 -2.0246 10 8 6.0965 1.5935 -2.6671 11 6 4.1313 0.4518 -1.9630 12 7 2.0183 -0.6907 1.1960 13 16 2.4122 0.1769 2.5504 14 8 2.8607 -0.8032 3.4764 15 8 3.2876 1.1904 2.0751 16 6 0.8409 0.8986 3.0986 17 6 1.0382 1.5812 4.4535 18 6 1.9576 2.7752 4.4522 19 1 2.9997 2.6546 4.7088 20 6 1.4684 4.0216 4.1234 21 7 0.2383 4.1481 3.6755 22 14 2.5527 5.5307 4.3139 23 1 3.8827 5.1221 4.8329 24 1 2.7176 6.1916 2.9944 25 1 1.9198 6.4779 5.2664 26 6 1.0362 0.6925 5.6991 27 6 -0.1551 1.6095 5.4107 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6054 -0.2616 -2.1370 32 1 1.7516 -1.7714 -1.2058 33 1 3.8662 -2.4135 -0.2041 34 1 6.3193 -2.2438 -0.3033 35 1 7.3779 -0.3506 -1.4674 36 1 6.2670 1.4333 -3.6053 37 1 3.5162 1.2096 -2.4255 38 1 2.1110 -1.6563 1.1947 39 1 0.5038 1.6334 2.3673 40 1 0.0931 0.1114 3.1937 41 1 -0.0820 5.0130 3.3754 42 1 0.8939 -0.3783 5.5531 43 1 1.6996 0.9717 6.5176 44 1 -0.2749 2.4916 6.0397 45 1 -1.0809 1.1423 5.0749 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451222505.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:39 Heat of formation + Delta-G solvation = -102.986045 kcal Electronic energy + Delta-G solvation = -28355.654912 eV Core-core repulsion = 24464.739436 eV Total energy + Delta-G solvation = -3890.915476 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.75587 -38.57734 -38.55019 -37.86946 -37.01281 -36.72495 -34.09743 -33.00815 -30.87896 -30.70790 -29.82593 -27.59515 -27.27973 -23.56035 -23.08530 -22.97230 -21.91414 -21.51252 -20.28879 -19.07687 -18.44293 -18.32750 -17.33556 -17.20031 -16.79321 -16.70350 -16.54493 -16.13051 -15.87002 -15.57907 -15.08001 -14.92158 -14.73067 -14.48090 -13.88199 -13.76376 -13.62398 -13.25755 -13.16041 -13.07796 -13.06317 -12.89167 -12.88890 -12.85221 -12.48132 -12.45891 -12.44015 -12.20794 -12.15466 -11.88795 -11.86873 -11.52181 -11.35406 -10.89224 -10.57426 -10.48002 -9.88664 -9.71312 -9.47510 -8.21311 -6.35148 -0.46495 0.34182 0.41063 1.33499 1.37437 1.48112 2.09451 2.37643 2.71756 2.98068 3.06794 3.28311 3.38994 3.50300 3.78702 3.92813 3.96579 4.03964 4.21882 4.27358 4.32061 4.36329 4.48304 4.50283 4.55927 4.59067 4.64305 4.77169 4.83568 4.95340 4.97570 4.98642 5.05437 5.15338 5.21097 5.31868 5.39501 5.48019 5.48848 5.52546 5.59020 5.67857 5.70795 5.98272 6.21720 6.29277 6.70522 6.87858 7.36933 8.85867 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012013 B = 0.004269 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.262816 B = 6556.912595 C = 7482.082211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.144 3.856 3 H 0.064 0.936 4 C -0.076 4.076 5 C -0.068 4.068 6 C -0.136 4.136 7 C -0.114 4.114 8 C -0.168 4.168 9 C 0.090 3.910 10 O -0.513 6.513 11 C -0.160 4.160 12 N -1.105 6.105 13 S 2.620 3.380 14 O -0.999 6.999 15 O -0.996 6.996 16 C -0.550 4.550 17 C 0.009 3.991 18 C -0.533 4.533 19 H 0.043 0.957 20 C 0.046 3.954 21 N -0.889 5.889 22 Si 0.930 3.070 23 H -0.276 1.276 24 H -0.277 1.277 25 H -0.268 1.268 26 C -0.198 4.198 27 C -0.136 4.136 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.050 0.950 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.136 0.864 36 H 0.408 0.592 37 H 0.134 0.866 38 H 0.423 0.577 39 H 0.124 0.876 40 H 0.135 0.865 41 H 0.266 0.734 42 H 0.099 0.901 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.663 -13.466 -15.114 20.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.037 3.963 3 H 0.082 0.918 4 C -0.114 4.114 5 C -0.068 4.068 6 C -0.154 4.154 7 C -0.132 4.132 8 C -0.186 4.186 9 C 0.046 3.954 10 O -0.326 6.326 11 C -0.178 4.178 12 N -0.866 5.866 13 S 2.717 3.283 14 O -0.989 6.989 15 O -0.985 6.985 16 C -0.683 4.683 17 C 0.007 3.993 18 C -0.571 4.571 19 H 0.062 0.938 20 C -0.157 4.157 21 N -0.525 5.525 22 Si 0.756 3.244 23 H -0.201 1.201 24 H -0.203 1.203 25 H -0.193 1.193 26 C -0.235 4.235 27 C -0.175 4.175 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.070 0.930 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.154 0.846 36 H 0.266 0.734 37 H 0.152 0.848 38 H 0.259 0.741 39 H 0.142 0.858 40 H 0.153 0.847 41 H 0.075 0.925 42 H 0.118 0.882 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.360 -12.779 -14.243 19.184 hybrid contribution 0.230 0.925 -0.229 0.981 sum 1.590 -11.854 -14.472 18.774 Atomic orbital electron populations 1.22454 0.93198 1.04434 1.03463 1.20938 0.95029 0.95865 0.84462 0.91757 1.20973 0.89426 1.03597 0.97414 1.19986 0.97036 0.93827 0.95978 1.21410 0.93880 1.00247 0.99831 1.21373 0.95542 0.98132 0.98113 1.21632 1.00967 0.94752 1.01262 1.18695 0.91104 0.87956 0.97658 1.84811 1.81698 1.37527 1.28594 1.21548 0.94343 0.99043 1.02868 1.55468 1.84340 1.19709 1.27121 1.04398 0.77506 0.73365 0.73073 1.93450 1.81064 1.60169 1.64238 1.93498 1.63480 1.61664 1.79886 1.29955 1.19952 1.10341 1.08027 1.18419 1.00097 0.95435 0.85350 1.20699 0.94636 0.92411 1.49330 0.93835 1.25450 0.95870 1.00688 0.93740 1.70005 1.16233 1.25291 1.40983 0.85927 0.79642 0.80508 0.78337 1.20084 1.20256 1.19324 1.23242 1.02754 0.96595 1.00930 1.22504 0.91954 0.99588 1.03429 0.89481 0.89330 0.93043 0.87247 0.87218 0.83917 0.83715 0.84583 0.73367 0.84813 0.74080 0.85789 0.84682 0.92494 0.88225 0.90176 0.91621 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.33 9.48 71.98 0.68 -2.65 16 2 C 0.14 3.41 2.80 45.00 0.13 3.54 16 3 H 0.06 1.96 7.48 -2.39 -0.02 1.94 16 4 C -0.08 -1.30 4.95 29.85 0.15 -1.15 16 5 C -0.07 -1.59 4.95 -19.88 -0.10 -1.69 16 6 C -0.14 -3.12 9.30 22.28 0.21 -2.92 16 7 C -0.11 -2.68 10.04 22.25 0.22 -2.46 16 8 C -0.17 -4.24 9.99 22.37 0.22 -4.01 16 9 C 0.09 2.43 6.71 22.51 0.15 2.58 16 10 O -0.51 -12.54 13.50 -92.44 -1.25 -13.79 16 11 C -0.16 -4.15 9.64 22.37 0.22 -3.94 16 12 N -1.10 -29.98 4.74 -169.38 -0.80 -30.79 16 13 S 2.62 106.02 5.16 -56.49 -0.29 105.72 16 14 O -1.00 -43.76 18.08 -127.65 -2.31 -46.07 16 15 O -1.00 -50.03 17.12 -127.65 -2.19 -52.22 16 16 C -0.55 -22.46 4.82 71.98 0.35 -22.12 16 17 C 0.01 0.44 1.33 -52.93 -0.07 0.37 16 18 C -0.53 -30.18 8.23 25.60 0.21 -29.97 16 19 H 0.04 2.60 7.82 -2.91 -0.02 2.58 16 20 C 0.05 2.54 5.38 84.65 0.46 3.00 16 21 N -0.89 -49.11 12.96 21.45 0.28 -48.83 16 22 Si 0.93 45.12 29.55 68.60 2.03 47.15 16 23 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 24 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 25 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 26 C -0.20 -8.60 9.96 30.62 0.30 -8.29 16 27 C -0.14 -6.07 9.47 30.62 0.29 -5.78 16 28 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.05 1.19 6.02 -2.39 -0.01 1.17 16 31 H 0.11 1.41 8.09 -2.39 -0.02 1.39 16 32 H 0.11 1.27 8.09 -2.39 -0.02 1.25 16 33 H 0.14 2.54 7.94 -2.91 -0.02 2.52 16 34 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 35 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 36 H 0.41 5.09 9.06 -74.06 -0.67 4.42 16 37 H 0.13 3.13 8.06 -2.91 -0.02 3.11 16 38 H 0.42 8.79 8.68 -96.74 -0.84 7.95 16 39 H 0.12 5.32 7.26 -2.39 -0.02 5.31 16 40 H 0.14 4.38 8.09 -2.39 -0.02 4.36 16 41 H 0.27 13.91 8.32 -92.71 -0.77 13.14 16 42 H 0.10 3.79 8.14 -2.38 -0.02 3.77 16 43 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 44 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 45 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 Total: -1.00 -78.57 389.34 -1.62 -80.19 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: -0.50 Total: 34.12 kcal Atomic # 6 Polarization: -78.91 SS G_CDS: 3.42 Total: -75.49 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -0.53 Total: -79.62 kcal Atomic # 8 Polarization: -106.34 SS G_CDS: -5.74 Total: -112.08 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: 106.02 SS G_CDS: -0.29 Total: 105.72 kcal Total: -78.57 -1.62 -80.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451222505.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.796 kcal (2) G-P(sol) polarization free energy of solvation -78.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds