Wall clock time and date at job start Sat Apr 11 2020 05:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47356 * 2 1 4 4 C 1.50696 * 109.47460 * 239.99083 * 2 1 3 5 5 H 1.07998 * 120.00328 * 240.00221 * 4 2 1 6 6 C 1.37882 * 119.99652 * 60.00350 * 4 2 1 7 7 N 1.31516 * 119.99783 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00172 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46889 * 60.00154 * 8 6 4 10 10 H 1.48499 * 109.47360 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47282 * 300.00485 * 8 6 4 12 12 C 1.53005 * 109.46662 * 119.99709 * 2 1 3 13 13 S 1.81404 * 109.47155 * 299.99637 * 12 2 1 14 14 O 1.42107 * 110.54099 * 68.37573 * 13 12 2 15 15 O 1.42097 * 110.54563 * 291.62992 * 13 12 2 16 16 N 1.65601 * 104.45006 * 179.97438 * 13 12 2 17 17 C 1.46493 * 119.99520 * 65.00502 * 16 13 12 18 18 C 1.50708 * 109.47178 * 164.99841 * 17 16 13 19 19 C 1.38261 * 119.97948 * 270.02500 * 18 17 16 20 20 C 1.38295 * 120.04146 * 179.97438 * 19 18 17 21 21 C 1.37831 * 119.96871 * 359.96675 * 20 19 18 22 22 C 1.38773 * 120.01371 * 0.02562 * 21 20 19 23 23 C 1.37967 * 120.01385 * 0.02562 * 22 21 20 24 24 C 1.51082 * 107.29752 * 180.02562 * 22 21 20 25 25 O 1.43951 * 105.95349 * 342.32532 * 24 22 21 26 26 C 1.43941 * 104.94972 * 28.44560 * 25 24 22 27 27 H 1.08995 * 109.47419 * 300.00864 * 1 2 3 28 28 H 1.09006 * 109.46608 * 60.00091 * 1 2 3 29 29 H 1.08998 * 109.47401 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46952 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46920 * 299.99354 * 3 2 1 32 32 H 1.08993 * 109.47200 * 59.99598 * 3 2 1 33 33 H 0.96999 * 119.99941 * 179.97438 * 7 6 4 34 34 H 1.08995 * 109.46926 * 180.02562 * 12 2 1 35 35 H 1.08998 * 109.47373 * 59.99785 * 12 2 1 36 36 H 0.96999 * 120.00142 * 245.00318 * 16 13 12 37 37 H 1.08995 * 109.47609 * 44.99890 * 17 16 13 38 38 H 1.08998 * 109.47412 * 284.99611 * 17 16 13 39 39 H 1.08005 * 119.97619 * 359.97172 * 19 18 17 40 40 H 1.08004 * 120.04045 * 179.97438 * 20 19 18 41 41 H 1.08001 * 120.03936 * 179.97438 * 23 22 21 42 42 H 1.09005 * 110.15139 * 223.20795 * 24 22 21 43 43 H 1.08990 * 110.15650 * 101.44695 * 24 22 21 44 44 H 1.09002 * 110.15431 * 90.68060 * 26 25 24 45 45 H 1.09004 * 110.15347 * 212.36657 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6533 -1.5886 -1.1311 6 6 1.6994 -0.2396 -2.4827 7 7 0.9437 0.8300 -2.6034 8 14 2.3226 -1.1199 -4.0078 9 1 1.8281 -2.5201 -4.0079 10 1 1.8281 -0.4197 -5.2204 11 1 3.8077 -1.1194 -4.0075 12 6 2.0399 -0.7212 1.2494 13 16 1.4352 0.1341 2.7304 14 8 0.0278 -0.0180 2.8544 15 8 2.0478 1.4102 2.8544 16 7 2.0527 -0.7406 3.9938 17 6 3.5010 -0.7979 4.2062 18 6 3.7855 -1.3262 5.5886 19 6 3.8965 -0.4512 6.6533 20 6 4.1570 -0.9347 7.9226 21 6 4.3054 -2.2898 8.1262 22 6 4.1940 -3.1685 7.0579 23 6 3.9351 -2.6860 5.7915 24 6 4.4036 -4.5632 7.5997 25 8 5.0390 -4.3986 8.8808 26 6 4.5865 -3.1182 9.3580 27 1 -0.3634 0.5139 0.8898 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 0.7097 1.1615 -3.4844 34 1 3.1298 -0.7209 1.2496 35 1 1.6765 -1.7489 1.2494 36 1 1.4555 -1.2149 4.5931 37 1 3.9230 0.2020 4.1055 38 1 3.9511 -1.4585 3.4651 39 1 3.7797 0.6106 6.4937 40 1 4.2441 -0.2511 8.7542 41 1 3.8488 -3.3695 4.9597 42 1 5.0488 -5.1328 6.9308 43 1 3.4450 -5.0681 7.7181 44 1 3.6768 -3.2368 9.9465 45 1 5.3633 -2.6455 9.9591 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451327303.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:46 Heat of formation + Delta-G solvation = -86.514534 kcal Electronic energy + Delta-G solvation = -27297.497193 eV Core-core repulsion = 23407.295975 eV Total energy + Delta-G solvation = -3890.201217 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.01645 -38.20482 -36.57933 -36.29967 -35.39988 -35.11042 -31.89257 -31.69172 -31.49094 -28.42102 -26.68431 -26.32952 -25.73776 -25.24645 -24.09597 -22.07468 -21.14736 -19.65375 -18.81670 -17.48514 -16.99784 -16.75907 -16.57289 -16.12231 -15.91585 -15.54620 -15.19283 -14.77273 -14.65740 -14.54888 -14.13996 -13.53109 -13.35205 -13.12850 -13.02720 -12.95864 -12.79919 -12.53223 -12.51406 -12.10852 -11.94493 -11.49745 -11.41792 -11.23885 -11.09479 -11.07476 -10.97077 -10.72852 -10.43840 -10.42968 -10.29756 -10.14031 -9.69644 -9.66993 -9.31942 -9.21949 -8.86459 -8.69563 -8.41979 -6.05432 -4.17681 0.65395 0.94674 1.00943 3.07200 3.25337 3.31114 3.32435 3.43911 3.53520 3.79564 4.22370 4.24612 4.35288 4.46216 4.57764 4.73903 4.88665 4.95479 4.99472 5.06778 5.15378 5.19643 5.20512 5.24581 5.34571 5.54670 5.59953 5.66354 5.71623 5.86012 5.92682 5.98577 6.23547 6.31480 6.34716 6.55935 6.67783 6.77364 6.88201 6.98867 7.07643 7.29349 7.48161 7.65613 7.96072 8.07225 8.30686 8.80602 9.47815 10.95853 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020156 B = 0.002533 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.857207 B =11052.478050 C =11841.159441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.083 3.917 3 C -0.164 4.164 4 C -0.503 4.503 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C -0.582 4.582 13 S 2.593 3.407 14 O -0.963 6.963 15 O -0.963 6.963 16 N -1.127 6.127 17 C 0.156 3.844 18 C -0.087 4.087 19 C -0.094 4.094 20 C -0.094 4.094 21 C -0.131 4.131 22 C -0.136 4.136 23 C -0.077 4.077 24 C 0.091 3.909 25 O -0.362 6.362 26 C 0.091 3.909 27 H 0.027 0.973 28 H 0.095 0.905 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.095 0.905 32 H 0.028 0.972 33 H 0.263 0.737 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.412 0.588 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.134 0.866 40 H 0.127 0.873 41 H 0.131 0.869 42 H 0.099 0.901 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.827 -6.834 20.228 22.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.080 3.920 3 C -0.222 4.222 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.715 4.715 13 S 2.691 3.309 14 O -0.954 6.954 15 O -0.953 6.953 16 N -0.884 5.884 17 C 0.030 3.970 18 C -0.088 4.088 19 C -0.113 4.113 20 C -0.112 4.112 21 C -0.132 4.132 22 C -0.136 4.136 23 C -0.096 4.096 24 C 0.015 3.985 25 O -0.281 6.281 26 C 0.015 3.985 27 H 0.046 0.954 28 H 0.114 0.886 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.114 0.886 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.245 0.755 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.152 0.848 40 H 0.145 0.855 41 H 0.149 0.851 42 H 0.117 0.883 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.473 -5.974 20.183 22.022 hybrid contribution 0.323 -1.105 -0.987 1.516 sum 6.796 -7.079 19.196 21.559 Atomic orbital electron populations 1.22281 0.96931 1.00649 1.02343 1.17922 0.92817 0.92204 0.89023 1.22279 0.99714 0.97807 1.02383 1.20901 1.31833 1.12121 0.89410 0.92355 1.24940 0.94876 0.94979 0.98935 1.69790 1.36223 1.22517 1.23616 0.86592 0.79144 0.79703 0.82149 1.20285 1.21181 1.20272 1.30525 1.11235 1.12923 1.16854 1.05661 0.74420 0.75233 0.75597 1.93559 1.29441 1.86642 1.85731 1.93537 1.78137 1.38150 1.85513 1.55940 1.13368 1.71338 1.47746 1.20176 0.81213 1.02347 0.93287 1.19842 1.00431 0.93126 0.95451 1.21184 0.97977 1.00365 0.91756 1.20358 1.00117 0.93341 0.97427 1.21085 1.01423 0.94569 0.96098 1.21052 1.01948 0.96283 0.94352 1.20354 0.98770 0.94815 0.95627 1.21757 0.98646 0.93229 0.84873 1.89088 1.69834 1.35722 1.33433 1.21748 1.00484 0.82671 0.93643 0.95371 0.88631 0.94460 0.94458 0.88650 0.95304 0.92661 0.86432 0.86206 0.75469 0.89069 0.90630 0.84764 0.85462 0.85130 0.88342 0.90380 0.90468 0.88484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 7.77 37.16 0.29 -3.71 16 2 C 0.08 1.96 0.52 -155.66 -0.08 1.88 16 3 C -0.16 -3.96 7.78 37.16 0.29 -3.67 16 4 C -0.50 -12.99 8.01 -34.44 -0.28 -13.27 16 5 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 6 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.88 -23.89 9.35 55.43 0.52 -23.37 16 8 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 C -0.58 -10.85 5.01 37.16 0.19 -10.67 16 13 S 2.59 45.95 4.49 -107.50 -0.48 45.47 16 14 O -0.96 -19.75 15.70 -57.54 -0.90 -20.65 16 15 O -0.96 -19.39 15.12 -57.54 -0.87 -20.26 16 16 N -1.13 -14.47 5.88 -11.66 -0.07 -14.54 16 17 C 0.16 1.71 6.26 -5.19 -0.03 1.67 16 18 C -0.09 -0.87 5.28 -104.59 -0.55 -1.42 16 19 C -0.09 -0.90 9.70 -39.55 -0.38 -1.28 16 20 C -0.09 -0.81 10.03 -39.71 -0.40 -1.21 16 21 C -0.13 -1.18 6.33 -104.38 -0.66 -1.84 16 22 C -0.14 -1.26 6.33 -104.34 -0.66 -1.92 16 23 C -0.08 -0.71 9.70 -39.66 -0.38 -1.10 16 24 C 0.09 0.73 7.63 36.19 0.28 1.00 16 25 O -0.36 -3.46 11.72 -35.23 -0.41 -3.87 16 26 C 0.09 0.69 7.63 36.19 0.28 0.97 16 27 H 0.03 0.65 5.46 -51.93 -0.28 0.36 16 28 H 0.10 2.51 6.07 -51.93 -0.32 2.20 16 29 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 32 H 0.03 0.66 5.46 -51.93 -0.28 0.37 16 33 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 34 H 0.12 1.94 8.14 -51.93 -0.42 1.52 16 35 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 36 H 0.41 4.68 8.61 -34.47 -0.30 4.38 16 37 H 0.09 1.02 7.64 -51.93 -0.40 0.62 16 38 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 39 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 40 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16 41 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 369.00 15.07 5.56 5.56 Total: -1.00 -32.48 369.00 -10.39 -42.87 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -6.50 Total: 6.36 kcal Atomic # 6 Polarization: -30.74 SS G_CDS: -2.20 Total: -32.94 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.45 Total: -37.91 kcal Atomic # 8 Polarization: -42.60 SS G_CDS: -2.19 Total: -44.79 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 45.95 SS G_CDS: -0.48 Total: 45.47 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.48 -10.39 -42.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451327303.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.646 kcal (2) G-P(sol) polarization free energy of solvation -32.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds