Wall clock time and date at job start Sat Apr 11 2020 05:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47356 * 2 1 4 4 C 1.50696 * 109.47460 * 239.99083 * 2 1 3 5 5 H 1.07998 * 120.00328 * 240.00221 * 4 2 1 6 6 C 1.37882 * 119.99652 * 60.00350 * 4 2 1 7 7 N 1.31516 * 119.99783 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00172 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46889 * 60.00154 * 8 6 4 10 10 H 1.48499 * 109.47360 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47282 * 300.00485 * 8 6 4 12 12 C 1.53005 * 109.46662 * 119.99709 * 2 1 3 13 13 S 1.81404 * 109.47155 * 299.99637 * 12 2 1 14 14 O 1.42107 * 110.54099 * 68.37573 * 13 12 2 15 15 O 1.42097 * 110.54563 * 291.62992 * 13 12 2 16 16 N 1.65601 * 104.45006 * 179.97438 * 13 12 2 17 17 C 1.46493 * 119.99520 * 65.00502 * 16 13 12 18 18 C 1.50708 * 109.47178 * 164.99841 * 17 16 13 19 19 C 1.38261 * 119.97948 * 270.02500 * 18 17 16 20 20 C 1.38295 * 120.04146 * 179.97438 * 19 18 17 21 21 C 1.37831 * 119.96871 * 359.96675 * 20 19 18 22 22 C 1.38773 * 120.01371 * 0.02562 * 21 20 19 23 23 C 1.37967 * 120.01385 * 0.02562 * 22 21 20 24 24 C 1.51082 * 107.29752 * 180.02562 * 22 21 20 25 25 O 1.43951 * 105.95349 * 342.32532 * 24 22 21 26 26 C 1.43941 * 104.94972 * 28.44560 * 25 24 22 27 27 H 1.08995 * 109.47419 * 300.00864 * 1 2 3 28 28 H 1.09006 * 109.46608 * 60.00091 * 1 2 3 29 29 H 1.08998 * 109.47401 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46952 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46920 * 299.99354 * 3 2 1 32 32 H 1.08993 * 109.47200 * 59.99598 * 3 2 1 33 33 H 0.96999 * 119.99941 * 179.97438 * 7 6 4 34 34 H 1.08995 * 109.46926 * 180.02562 * 12 2 1 35 35 H 1.08998 * 109.47373 * 59.99785 * 12 2 1 36 36 H 0.96999 * 120.00142 * 245.00318 * 16 13 12 37 37 H 1.08995 * 109.47609 * 44.99890 * 17 16 13 38 38 H 1.08998 * 109.47412 * 284.99611 * 17 16 13 39 39 H 1.08005 * 119.97619 * 359.97172 * 19 18 17 40 40 H 1.08004 * 120.04045 * 179.97438 * 20 19 18 41 41 H 1.08001 * 120.03936 * 179.97438 * 23 22 21 42 42 H 1.09005 * 110.15139 * 223.20795 * 24 22 21 43 43 H 1.08990 * 110.15650 * 101.44695 * 24 22 21 44 44 H 1.09002 * 110.15431 * 90.68060 * 26 25 24 45 45 H 1.09004 * 110.15347 * 212.36657 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6533 -1.5886 -1.1311 6 6 1.6994 -0.2396 -2.4827 7 7 0.9437 0.8300 -2.6034 8 14 2.3226 -1.1199 -4.0078 9 1 1.8281 -2.5201 -4.0079 10 1 1.8281 -0.4197 -5.2204 11 1 3.8077 -1.1194 -4.0075 12 6 2.0399 -0.7212 1.2494 13 16 1.4352 0.1341 2.7304 14 8 0.0278 -0.0180 2.8544 15 8 2.0478 1.4102 2.8544 16 7 2.0527 -0.7406 3.9938 17 6 3.5010 -0.7979 4.2062 18 6 3.7855 -1.3262 5.5886 19 6 3.8965 -0.4512 6.6533 20 6 4.1570 -0.9347 7.9226 21 6 4.3054 -2.2898 8.1262 22 6 4.1940 -3.1685 7.0579 23 6 3.9351 -2.6860 5.7915 24 6 4.4036 -4.5632 7.5997 25 8 5.0390 -4.3986 8.8808 26 6 4.5865 -3.1182 9.3580 27 1 -0.3634 0.5139 0.8898 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 0.7097 1.1615 -3.4844 34 1 3.1298 -0.7209 1.2496 35 1 1.6765 -1.7489 1.2494 36 1 1.4555 -1.2149 4.5931 37 1 3.9230 0.2020 4.1055 38 1 3.9511 -1.4585 3.4651 39 1 3.7797 0.6106 6.4937 40 1 4.2441 -0.2511 8.7542 41 1 3.8488 -3.3695 4.9597 42 1 5.0488 -5.1328 6.9308 43 1 3.4450 -5.0681 7.7181 44 1 3.6768 -3.2368 9.9465 45 1 5.3633 -2.6455 9.9591 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451327303.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:45 Heat of formation + Delta-G solvation = -108.051223 kcal Electronic energy + Delta-G solvation = -27298.431094 eV Core-core repulsion = 23407.295975 eV Total energy + Delta-G solvation = -3891.135118 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.64970 -38.91009 -38.10819 -38.08155 -36.89059 -36.08203 -33.61844 -32.53971 -32.25848 -29.06341 -28.29665 -27.67232 -27.26034 -27.07291 -24.79798 -22.68894 -21.87927 -21.36056 -20.24820 -18.82178 -17.97000 -17.69630 -17.45234 -17.32553 -16.92775 -16.86463 -16.62364 -16.21273 -15.73273 -15.27747 -15.09903 -14.77346 -14.65049 -14.40537 -14.15805 -14.07996 -13.80468 -13.67905 -13.59744 -13.39196 -13.08833 -13.00018 -12.85248 -12.79946 -12.71446 -12.48444 -12.23915 -12.15456 -12.13015 -11.94730 -11.85647 -11.54367 -11.36301 -11.06897 -10.70373 -10.39783 -10.33425 -9.87689 -9.51724 -8.01698 -6.20261 -0.63373 0.14196 0.33053 1.46327 1.46864 1.53798 1.93085 2.45219 2.65279 2.87025 2.96062 3.14808 3.20733 3.35788 3.61797 3.69618 3.96617 4.03302 4.20436 4.23214 4.37622 4.39678 4.43943 4.48138 4.55124 4.61286 4.62800 4.76761 4.81901 4.88604 4.89665 4.91118 5.01849 5.06828 5.10855 5.28266 5.30973 5.41005 5.52733 5.54312 5.66163 5.70052 5.90578 5.99534 6.07742 6.13753 6.35692 6.84810 7.48097 8.97893 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020156 B = 0.002533 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.857207 B =11052.478050 C =11841.159441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.070 3.930 3 C -0.161 4.161 4 C -0.517 4.517 5 H 0.065 0.935 6 C 0.017 3.983 7 N -0.908 5.908 8 Si 0.954 3.046 9 H -0.272 1.272 10 H -0.289 1.289 11 H -0.271 1.271 12 C -0.586 4.586 13 S 2.614 3.386 14 O -0.994 6.994 15 O -0.989 6.989 16 N -1.110 6.110 17 C 0.148 3.852 18 C -0.097 4.097 19 C -0.106 4.106 20 C -0.098 4.098 21 C -0.139 4.139 22 C -0.148 4.148 23 C -0.081 4.081 24 C 0.089 3.911 25 O -0.382 6.382 26 C 0.088 3.912 27 H 0.032 0.968 28 H 0.070 0.930 29 H 0.040 0.960 30 H 0.042 0.958 31 H 0.069 0.931 32 H 0.033 0.967 33 H 0.261 0.739 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.422 0.578 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.138 0.862 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.109 0.891 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.015 -8.396 21.462 24.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.067 3.933 3 C -0.219 4.219 4 C -0.556 4.556 5 H 0.083 0.917 6 C -0.183 4.183 7 N -0.547 5.547 8 Si 0.780 3.220 9 H -0.197 1.197 10 H -0.215 1.215 11 H -0.196 1.196 12 C -0.718 4.718 13 S 2.712 3.288 14 O -0.984 6.984 15 O -0.979 6.979 16 N -0.870 5.870 17 C 0.022 3.978 18 C -0.098 4.098 19 C -0.125 4.125 20 C -0.115 4.115 21 C -0.139 4.139 22 C -0.148 4.148 23 C -0.099 4.099 24 C 0.013 3.987 25 O -0.301 6.301 26 C 0.013 3.987 27 H 0.051 0.949 28 H 0.088 0.912 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.257 0.743 37 H 0.106 0.894 38 H 0.115 0.885 39 H 0.156 0.844 40 H 0.166 0.834 41 H 0.163 0.837 42 H 0.127 0.873 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.660 -7.544 21.418 23.965 hybrid contribution -0.017 -0.629 -1.264 1.412 sum 7.643 -8.173 20.154 23.052 Atomic orbital electron populations 1.22224 0.97942 1.00477 1.01303 1.17909 0.92202 0.92176 0.90964 1.22213 0.99937 0.98370 1.01339 1.21285 1.31632 1.12323 0.90364 0.91692 1.25682 0.95221 0.95657 1.01696 1.69941 1.37225 1.23696 1.23859 0.85683 0.78775 0.78704 0.78867 1.19739 1.21522 1.19636 1.30454 1.12798 1.13434 1.15146 1.04714 0.73438 0.74858 0.75797 1.93511 1.31583 1.87059 1.86265 1.93501 1.78426 1.40017 1.85978 1.55458 1.14646 1.70800 1.46140 1.20419 0.79611 1.02947 0.94774 1.19774 1.01566 0.93588 0.94916 1.21365 0.98200 1.00676 0.92217 1.20589 0.99506 0.93707 0.97739 1.21368 1.00980 0.94857 0.96735 1.21292 1.01949 0.97075 0.94512 1.20518 0.98425 0.94755 0.96235 1.21882 0.99431 0.92819 0.84530 1.89063 1.70379 1.36564 1.34096 1.21906 1.01605 0.81906 0.93322 0.94912 0.91154 0.94118 0.93912 0.91227 0.94798 0.92980 0.84121 0.84274 0.74280 0.89403 0.88475 0.84439 0.83411 0.83672 0.87291 0.89234 0.89137 0.87086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.92 7.77 71.98 0.56 -7.36 16 2 C 0.07 3.26 0.52 -52.93 -0.03 3.23 16 3 C -0.16 -7.79 7.78 71.98 0.56 -7.23 16 4 C -0.52 -26.26 8.01 25.60 0.21 -26.05 16 5 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 6 C 0.02 0.88 5.15 84.66 0.44 1.31 16 7 N -0.91 -49.91 9.35 21.45 0.20 -49.71 16 8 Si 0.95 41.52 29.54 68.60 2.03 43.55 16 9 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 10 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 12 C -0.59 -20.76 5.01 71.98 0.36 -20.40 16 13 S 2.61 89.36 4.49 -56.49 -0.25 89.11 16 14 O -0.99 -40.00 15.70 -127.65 -2.00 -42.01 16 15 O -0.99 -39.01 15.12 -127.65 -1.93 -40.94 16 16 N -1.11 -26.28 5.88 -190.80 -1.12 -27.40 16 17 C 0.15 2.91 6.26 85.64 0.54 3.44 16 18 C -0.10 -1.75 5.28 -19.84 -0.10 -1.85 16 19 C -0.11 -1.85 9.70 22.29 0.22 -1.63 16 20 C -0.10 -1.48 10.03 22.19 0.22 -1.26 16 21 C -0.14 -2.21 6.33 -19.71 -0.12 -2.34 16 22 C -0.15 -2.44 6.33 -19.68 -0.12 -2.56 16 23 C -0.08 -1.32 9.70 22.22 0.22 -1.10 16 24 C 0.09 1.25 7.63 71.36 0.54 1.80 16 25 O -0.38 -6.61 11.72 -148.98 -1.75 -8.36 16 26 C 0.09 1.17 7.63 71.36 0.54 1.71 16 27 H 0.03 1.53 5.46 -2.39 -0.01 1.51 16 28 H 0.07 3.78 6.07 -2.38 -0.01 3.77 16 29 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.07 3.72 6.07 -2.39 -0.01 3.71 16 32 H 0.03 1.56 5.46 -2.39 -0.01 1.55 16 33 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 34 H 0.14 4.27 8.14 -2.39 -0.02 4.25 16 35 H 0.14 4.35 8.14 -2.39 -0.02 4.33 16 36 H 0.42 8.71 8.61 -96.75 -0.83 7.88 16 37 H 0.09 1.81 7.64 -2.39 -0.02 1.79 16 38 H 0.10 1.50 8.08 -2.39 -0.02 1.48 16 39 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 40 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 41 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 42 H 0.11 1.24 8.14 -2.38 -0.02 1.23 16 43 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 Total: -1.00 -68.99 369.00 -0.63 -69.62 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: 0.18 Total: 26.44 kcal Atomic # 6 Polarization: -64.32 SS G_CDS: 4.02 Total: -60.30 kcal Atomic # 7 Polarization: -76.19 SS G_CDS: -0.92 Total: -77.12 kcal Atomic # 8 Polarization: -85.62 SS G_CDS: -5.68 Total: -91.30 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Atomic # 16 Polarization: 89.36 SS G_CDS: -0.25 Total: 89.11 kcal Total: -68.99 -0.63 -69.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451327303.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.428 kcal (2) G-P(sol) polarization free energy of solvation -68.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds