Wall clock time and date at job start Sat Apr 11 2020 05:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47080 * 2 1 4 4 C 1.50700 * 109.47615 * 119.99765 * 2 1 3 5 5 H 1.08002 * 119.99830 * 124.66140 * 4 2 1 6 6 C 1.37879 * 119.99932 * 304.67170 * 4 2 1 7 7 N 1.31506 * 119.99955 * 351.94256 * 6 4 2 8 8 Si 1.86797 * 119.99806 * 171.94591 * 6 4 2 9 9 H 1.48503 * 109.47338 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47054 * 119.99866 * 8 6 4 11 11 H 1.48504 * 109.47202 * 239.99612 * 8 6 4 12 12 C 1.53002 * 109.47070 * 240.00043 * 2 1 3 13 13 S 1.81401 * 109.47071 * 59.99711 * 12 2 1 14 14 O 1.42099 * 110.54100 * 291.62461 * 13 12 2 15 15 O 1.42102 * 110.54031 * 68.37903 * 13 12 2 16 16 N 1.65597 * 104.45014 * 180.02562 * 13 12 2 17 17 C 1.46505 * 120.00123 * 64.99577 * 16 13 12 18 18 H 1.08999 * 110.72324 * 21.59264 * 17 16 13 19 19 C 1.54346 * 110.82810 * 257.96006 * 17 16 13 20 20 C 1.51378 * 105.16740 * 215.44220 * 19 17 16 21 21 C 1.38545 * 130.35552 * 197.20953 * 20 19 17 22 22 C 1.38128 * 120.33121 * 179.97438 * 21 20 19 23 23 C 1.38157 * 119.99910 * 0.02562 * 22 21 20 24 24 C 1.38603 * 119.87420 * 0.02562 * 23 22 21 25 25 O 1.35898 * 119.95327 * 179.97438 * 24 23 22 26 26 C 1.38124 * 109.76206 * 17.18937 * 20 19 17 27 27 C 1.51361 * 109.78324 * 359.97438 * 26 20 19 28 28 H 1.09008 * 109.46960 * 291.93835 * 1 2 3 29 29 H 1.08996 * 109.47522 * 51.94334 * 1 2 3 30 30 H 1.09003 * 109.47195 * 171.94628 * 1 2 3 31 31 H 1.09000 * 109.47116 * 188.34704 * 3 2 1 32 32 H 1.08997 * 109.46816 * 308.34437 * 3 2 1 33 33 H 1.08993 * 109.47075 * 68.34533 * 3 2 1 34 34 H 0.97004 * 120.00219 * 5.68158 * 7 6 4 35 35 H 1.09002 * 109.47114 * 180.02562 * 12 2 1 36 36 H 1.08995 * 109.47082 * 299.99836 * 12 2 1 37 37 H 0.96997 * 120.00351 * 245.00567 * 16 13 12 38 38 H 1.08996 * 110.30134 * 334.36603 * 19 17 16 39 39 H 1.08998 * 110.30331 * 96.51517 * 19 17 16 40 40 H 1.07998 * 119.83350 * 359.95663 * 21 20 19 41 41 H 1.08008 * 119.99690 * 180.02562 * 22 21 20 42 42 H 1.08004 * 120.06574 * 180.02562 * 23 22 21 43 43 H 0.96698 * 114.00203 * 269.98318 * 25 24 23 44 44 H 1.09002 * 110.30445 * 223.89664 * 27 26 20 45 45 H 1.08998 * 110.30345 * 101.74552 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.7140 -1.5425 1.1331 6 6 1.6218 -0.2980 2.4805 7 7 0.9218 0.8076 2.6111 8 14 2.0600 -1.3098 3.9883 9 1 2.8466 -2.4996 3.5746 10 1 2.8662 -0.4830 4.9220 11 1 0.8152 -1.7515 4.6669 12 6 2.0399 -0.7213 -1.2493 13 16 1.4352 0.1339 -2.7304 14 8 0.0278 -0.0184 -2.8543 15 8 2.0479 1.4100 -2.8544 16 7 2.0528 -0.7408 -3.9936 17 6 1.6231 -2.1253 -4.2054 18 1 0.6620 -2.3086 -3.7250 19 6 2.6928 -3.1156 -3.6981 20 6 2.6456 -4.2793 -4.6651 21 6 3.1358 -5.5692 -4.5412 22 6 2.9749 -6.4783 -5.5686 23 6 2.3227 -6.1029 -6.7273 24 6 1.8315 -4.8133 -6.8562 25 8 1.1902 -4.4422 -7.9954 26 6 1.9925 -3.8995 -5.8214 27 6 1.5549 -2.4546 -5.7116 28 1 -0.3633 0.3840 0.9533 29 1 -0.3634 0.6335 -0.8091 30 1 -0.3634 -1.0175 -0.1440 31 1 3.1197 1.4462 -0.1492 32 1 1.5600 1.9975 -0.8060 33 1 1.8035 1.9114 0.9551 34 1 0.6238 1.2889 1.8234 35 1 3.1300 -0.7217 -1.2490 36 1 1.6766 -1.7489 -1.2493 37 1 2.6992 -0.3366 -4.5933 38 1 3.6779 -2.6495 -3.7150 39 1 2.4496 -3.4513 -2.6900 40 1 3.6467 -5.8652 -3.6369 41 1 3.3589 -7.4826 -5.4661 42 1 2.1959 -6.8130 -7.5311 43 1 1.7739 -4.0764 -8.6740 44 1 0.5351 -2.3393 -6.0786 45 1 2.2339 -1.8104 -6.2702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451456724.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:51 Heat of formation + Delta-G solvation = -88.576554 kcal Electronic energy + Delta-G solvation = -28015.603089 eV Core-core repulsion = 24125.312456 eV Total energy + Delta-G solvation = -3890.290633 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.69987 -37.90581 -36.84250 -36.68785 -36.27183 -35.46413 -32.92402 -31.58259 -30.59697 -28.03794 -27.52748 -26.76383 -26.08244 -24.93471 -22.67268 -21.45789 -21.20528 -19.71448 -19.12133 -18.25574 -17.63067 -16.83483 -16.55680 -16.21985 -15.84295 -15.56899 -15.29280 -14.98876 -14.25480 -13.91174 -13.81634 -13.50425 -13.28253 -13.12585 -13.10454 -12.89863 -12.66074 -12.40790 -12.15834 -12.09876 -11.68230 -11.61088 -11.50758 -11.37136 -11.29787 -11.10297 -10.97882 -10.79932 -10.58308 -10.57546 -10.34167 -10.18531 -9.95057 -9.91544 -9.49267 -8.84778 -8.81910 -8.53053 -8.24458 -6.31472 -4.17771 0.71083 0.96573 1.01724 3.01611 3.30434 3.38951 3.41982 3.54647 3.92970 4.06263 4.17314 4.28874 4.45687 4.60553 4.68358 4.80062 4.85836 4.87624 5.13486 5.20930 5.24149 5.26052 5.41338 5.49183 5.52671 5.58349 5.64732 5.69265 5.86233 6.00489 6.11218 6.14154 6.17034 6.29314 6.38820 6.47235 6.52946 6.59730 6.72526 6.96143 7.01020 7.05225 7.36372 7.44343 7.53767 8.07201 8.31751 8.76436 9.53217 10.93834 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015286 B = 0.003235 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.286577 B = 8653.914547 C =10002.141352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.067 3.933 3 C -0.174 4.174 4 C -0.581 4.581 5 H 0.055 0.945 6 C 0.024 3.976 7 N -0.914 5.914 8 Si 1.072 2.928 9 H -0.290 1.290 10 H -0.287 1.287 11 H -0.286 1.286 12 C -0.574 4.574 13 S 2.590 3.410 14 O -0.963 6.963 15 O -0.964 6.964 16 N -1.119 6.119 17 C 0.150 3.850 18 H 0.110 0.890 19 C -0.109 4.109 20 C -0.072 4.072 21 C -0.114 4.114 22 C -0.103 4.103 23 C -0.148 4.148 24 C 0.117 3.883 25 O -0.498 6.498 26 C -0.121 4.121 27 C -0.079 4.079 28 H 0.083 0.917 29 H 0.033 0.967 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.031 0.969 33 H 0.081 0.919 34 H 0.283 0.717 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.413 0.587 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.388 0.612 44 H 0.087 0.913 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.573 -11.817 -18.528 22.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.065 3.935 3 C -0.232 4.232 4 C -0.621 4.621 5 H 0.073 0.927 6 C -0.180 4.180 7 N -0.554 5.554 8 Si 0.900 3.100 9 H -0.216 1.216 10 H -0.213 1.213 11 H -0.212 1.212 12 C -0.708 4.708 13 S 2.687 3.313 14 O -0.952 6.952 15 O -0.954 6.954 16 N -0.874 5.874 17 C 0.041 3.959 18 H 0.128 0.872 19 C -0.148 4.148 20 C -0.073 4.073 21 C -0.132 4.132 22 C -0.121 4.121 23 C -0.167 4.167 24 C 0.073 3.927 25 O -0.308 6.308 26 C -0.122 4.122 27 C -0.117 4.117 28 H 0.101 0.899 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.246 0.754 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.243 0.757 44 H 0.106 0.894 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.258 -11.300 -16.597 20.525 hybrid contribution 1.268 -0.366 -2.003 2.399 sum 5.526 -11.666 -18.600 22.641 Atomic orbital electron populations 1.22443 0.97391 1.00864 1.02661 1.18076 0.92319 0.92128 0.90992 1.22483 1.00460 0.97866 1.02410 1.21749 1.31075 1.18419 0.90825 0.92704 1.25745 0.94955 0.96379 1.00959 1.70796 1.35718 1.13996 1.34890 0.83508 0.76313 0.75071 0.75079 1.21581 1.21340 1.21249 1.30480 1.11467 1.12681 1.16141 1.05737 0.75015 0.74741 0.75766 1.93559 1.29758 1.86394 1.85530 1.93567 1.78086 1.37971 1.85800 1.55888 1.60731 1.23251 1.47539 1.21385 0.97695 0.80450 0.96327 0.87222 1.21763 1.01000 0.93149 0.98878 1.20421 0.97102 0.94475 0.95280 1.20717 1.00808 0.92210 0.99495 1.20930 0.98734 0.99550 0.92934 1.21298 0.99922 0.95930 0.99505 1.18051 0.95715 0.91844 0.87104 1.84826 1.36710 1.83925 1.25321 1.20806 1.00143 0.96056 0.95200 1.21197 1.03000 0.91544 0.95971 0.89857 0.94769 0.93377 0.93452 0.94979 0.89989 0.90064 0.86037 0.86217 0.75391 0.88696 0.89207 0.85612 0.85346 0.85298 0.75654 0.89417 0.89501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.18 7.34 37.16 0.27 -3.91 16 2 C 0.07 1.58 0.52 -155.66 -0.08 1.50 16 3 C -0.17 -4.16 7.39 37.16 0.27 -3.88 16 4 C -0.58 -15.17 8.00 -34.44 -0.28 -15.44 16 5 H 0.05 1.40 7.76 -52.49 -0.41 1.00 16 6 C 0.02 0.65 5.06 -17.82 -0.09 0.56 16 7 N -0.91 -26.04 12.14 55.43 0.67 -25.37 16 8 Si 1.07 24.11 29.91 -169.99 -5.08 19.03 16 9 H -0.29 -6.18 7.11 56.52 0.40 -5.77 16 10 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 12 C -0.57 -10.66 5.00 37.16 0.19 -10.47 16 13 S 2.59 45.49 4.47 -107.50 -0.48 45.01 16 14 O -0.96 -19.46 15.24 -57.54 -0.88 -20.34 16 15 O -0.96 -19.39 15.88 -57.54 -0.91 -20.31 16 16 N -1.12 -14.05 5.44 -3.70 -0.02 -14.07 16 17 C 0.15 1.73 3.64 -66.53 -0.24 1.49 16 18 H 0.11 1.37 7.57 -51.93 -0.39 0.97 16 19 C -0.11 -1.13 6.49 -26.85 -0.17 -1.31 16 20 C -0.07 -0.75 6.14 -104.22 -0.64 -1.39 16 21 C -0.11 -1.06 10.04 -39.51 -0.40 -1.46 16 22 C -0.10 -0.86 10.04 -39.65 -0.40 -1.26 16 23 C -0.15 -1.30 9.98 -39.48 -0.39 -1.69 16 24 C 0.12 1.17 6.70 -39.17 -0.26 0.90 16 25 O -0.50 -4.43 13.45 -19.42 -0.26 -4.69 16 26 C -0.12 -1.28 6.11 -104.06 -0.64 -1.91 16 27 C -0.08 -0.80 6.43 -26.86 -0.17 -0.97 16 28 H 0.08 2.14 5.17 -51.92 -0.27 1.87 16 29 H 0.03 0.77 6.01 -51.93 -0.31 0.46 16 30 H 0.05 1.08 8.13 -51.93 -0.42 0.66 16 31 H 0.05 1.07 8.13 -51.93 -0.42 0.65 16 32 H 0.03 0.72 6.03 -51.93 -0.31 0.41 16 33 H 0.08 2.11 5.30 -51.93 -0.28 1.83 16 34 H 0.28 7.91 3.62 -40.82 -0.15 7.76 16 35 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 36 H 0.12 1.99 7.99 -51.93 -0.42 1.58 16 37 H 0.41 4.23 8.66 -34.47 -0.30 3.93 16 38 H 0.09 0.89 8.08 -51.93 -0.42 0.47 16 39 H 0.09 0.92 7.99 -51.93 -0.42 0.50 16 40 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 42 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 43 H 0.39 1.60 9.06 45.56 0.41 2.01 16 44 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.09 0.75 7.89 -51.93 -0.41 0.34 16 LS Contribution 364.59 15.07 5.49 5.49 Total: -1.00 -34.40 364.59 -9.91 -44.32 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -5.42 Total: 10.16 kcal Atomic # 6 Polarization: -36.21 SS G_CDS: -3.03 Total: -39.24 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.65 Total: -39.43 kcal Atomic # 8 Polarization: -43.28 SS G_CDS: -2.05 Total: -45.33 kcal Atomic # 14 Polarization: 24.11 SS G_CDS: -5.08 Total: 19.03 kcal Atomic # 16 Polarization: 45.49 SS G_CDS: -0.48 Total: 45.01 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.40 -9.91 -44.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451456724.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.260 kcal (2) G-P(sol) polarization free energy of solvation -34.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds