Wall clock time and date at job start Sat Apr 11 2020 05:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 110.66888 * 2 1 4 4 O 1.43761 * 110.75113 * 123.41266 * 2 1 3 5 5 C 1.36138 * 109.28998 * 145.87706 * 4 2 1 6 6 C 1.39285 * 129.88066 * 161.47012 * 5 4 2 7 7 C 1.37931 * 120.24077 * 179.57992 * 6 5 4 8 8 C 1.38285 * 120.35416 * 0.02562 * 7 6 5 9 9 C 1.38348 * 119.76415 * 0.18262 * 8 7 6 10 10 C 1.37742 * 119.97428 * 359.97438 * 9 8 7 11 11 C 1.51648 * 132.16887 * 179.63071 * 10 9 8 12 12 H 1.09007 * 110.97430 * 313.88473 * 11 10 9 13 13 N 1.46494 * 110.94746 * 77.57164 * 11 10 9 14 14 S 1.65592 * 120.00412 * 235.92612 * 13 11 10 15 15 O 1.42096 * 104.28239 * 179.81451 * 14 13 11 16 16 O 1.42099 * 104.27712 * 307.67470 * 14 13 11 17 17 C 1.81408 * 104.44765 * 63.74098 * 14 13 11 18 18 C 1.53001 * 109.46830 * 179.76346 * 17 14 13 19 19 C 1.53002 * 109.47454 * 299.99957 * 18 17 14 20 20 C 1.52994 * 109.47177 * 60.00617 * 18 17 14 21 21 C 1.50707 * 109.46875 * 180.02562 * 18 17 14 22 22 H 1.08005 * 119.99533 * 0.02562 * 21 18 17 23 23 C 1.37873 * 120.00191 * 179.97438 * 21 18 17 24 24 N 1.31516 * 119.99937 * 0.02562 * 23 21 18 25 25 Si 1.86797 * 120.00160 * 179.97438 * 23 21 18 26 26 H 1.48503 * 109.46828 * 90.00387 * 25 23 21 27 27 H 1.48500 * 109.47026 * 210.00110 * 25 23 21 28 28 H 1.48497 * 109.46990 * 330.00204 * 25 23 21 29 29 H 1.08997 * 109.47339 * 183.21646 * 1 2 3 30 30 H 1.09008 * 109.47152 * 303.20777 * 1 2 3 31 31 H 1.08995 * 109.47346 * 63.20890 * 1 2 3 32 32 H 1.07999 * 119.88439 * 359.55157 * 6 5 4 33 33 H 1.07998 * 119.82142 * 179.97438 * 7 6 5 34 34 H 1.08001 * 120.11628 * 180.19462 * 8 7 6 35 35 H 1.08000 * 120.01279 * 179.97438 * 9 8 7 36 36 H 0.97001 * 119.99365 * 55.65128 * 13 11 10 37 37 H 1.08996 * 109.47262 * 299.76844 * 17 14 13 38 38 H 1.09001 * 109.46921 * 59.77179 * 17 14 13 39 39 H 1.09004 * 109.46686 * 60.00688 * 19 18 17 40 40 H 1.08998 * 109.47167 * 179.97438 * 19 18 17 41 41 H 1.09001 * 109.47303 * 300.00323 * 19 18 17 42 42 H 1.09001 * 109.47463 * 59.99682 * 20 18 17 43 43 H 1.08998 * 109.47365 * 179.97438 * 20 18 17 44 44 H 1.09004 * 109.47336 * 299.99540 * 20 18 17 45 45 H 0.97001 * 120.00190 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9147 1.0199 0.0000 4 8 2.0393 -0.7403 1.1222 5 6 3.1933 -1.3660 0.7617 6 6 4.2084 -1.8945 1.5557 7 6 5.3012 -2.5017 0.9732 8 6 5.3998 -2.5911 -0.4033 9 6 4.3980 -2.0648 -1.1992 10 6 3.3073 -1.4552 -0.6195 11 6 2.0784 -0.7916 -1.2105 12 1 2.3511 -0.1196 -2.0243 13 7 1.1096 -1.7926 -1.6637 14 16 0.5791 -1.7808 -3.2323 15 8 -0.3268 -2.8732 -3.3042 16 8 0.1364 -0.4470 -3.4425 17 6 2.0654 -2.1204 -4.2154 18 6 1.7003 -2.1415 -5.7010 19 6 0.6600 -3.2343 -5.9552 20 6 1.1222 -0.7834 -6.1035 21 6 2.9350 -2.4243 -6.5177 22 1 3.8849 -2.5745 -6.0261 23 6 2.8517 -2.4925 -7.8922 24 7 1.6949 -2.3102 -8.4907 25 14 4.3822 -2.8423 -8.9045 26 1 4.5291 -4.3085 -9.0890 27 1 4.2589 -2.1863 -10.2310 28 1 5.5751 -2.3102 -8.1981 29 1 -0.3634 -1.0260 0.0577 30 1 -0.3634 0.5629 0.8599 31 1 -0.3634 0.4632 -0.9173 32 1 4.1397 -1.8282 2.6315 33 1 6.0845 -2.9088 1.5953 34 1 6.2557 -3.0701 -0.8553 35 1 4.4711 -2.1320 -2.2746 36 1 0.7819 -2.4648 -1.0459 37 1 2.8065 -1.3420 -4.0343 38 1 2.4773 -3.0881 -3.9287 39 1 -0.2331 -3.0301 -5.3646 40 1 0.3997 -3.2490 -7.0135 41 1 1.0719 -4.2019 -5.6685 42 1 1.8634 -0.0049 -5.9224 43 1 0.8626 -0.7982 -7.1619 44 1 0.2291 -0.5792 -5.5128 45 1 1.6364 -2.3577 -9.4578 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451555911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:01 Heat of formation + Delta-G solvation = -94.074308 kcal Electronic energy + Delta-G solvation = -28850.390613 eV Core-core repulsion = 24959.861580 eV Total energy + Delta-G solvation = -3890.529034 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.31351 -38.50824 -38.14633 -38.13280 -36.95433 -36.35295 -33.63486 -32.20928 -31.94238 -30.63014 -28.34262 -27.69342 -27.30036 -27.15758 -23.48373 -22.61872 -22.52671 -21.43435 -20.42257 -18.98108 -18.71829 -17.95230 -17.47387 -17.36958 -16.94366 -16.75293 -16.57601 -16.09733 -15.81512 -15.08405 -15.03161 -14.78220 -14.63075 -14.42482 -14.37797 -13.92749 -13.85419 -13.46827 -13.37766 -13.10014 -13.01942 -12.90628 -12.88538 -12.77062 -12.62745 -12.53157 -12.36300 -12.18707 -12.14833 -12.04626 -11.86387 -11.81941 -11.56855 -11.40397 -10.74866 -10.45353 -10.40509 -9.91565 -9.17195 -8.02303 -6.20575 -0.68634 0.28895 0.43910 1.44697 1.47006 1.54982 1.80845 2.20142 2.44788 2.75839 2.83150 3.19627 3.23768 3.31497 3.42735 3.73938 3.92585 4.03925 4.07030 4.18960 4.20841 4.25742 4.39832 4.51412 4.58774 4.64528 4.65861 4.83901 4.84793 4.86295 4.93631 4.98858 5.07928 5.11174 5.22209 5.38203 5.39757 5.47387 5.50757 5.58419 5.65612 5.69559 5.91375 5.97652 6.11743 6.22797 6.34458 6.84053 7.47834 8.97606 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013682 B = 0.004142 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.941758 B = 6757.853590 C = 8236.347336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.071 3.929 3 H 0.119 0.881 4 O -0.310 6.310 5 C 0.098 3.902 6 C -0.150 4.150 7 C -0.073 4.073 8 C -0.154 4.154 9 C -0.070 4.070 10 C -0.204 4.204 11 C 0.160 3.840 12 H 0.123 0.877 13 N -1.097 6.097 14 S 2.611 3.389 15 O -0.991 6.991 16 O -0.979 6.979 17 C -0.584 4.584 18 C 0.071 3.929 19 C -0.161 4.161 20 C -0.159 4.159 21 C -0.514 4.514 22 H 0.065 0.935 23 C 0.018 3.982 24 N -0.908 5.908 25 Si 0.953 3.047 26 H -0.280 1.280 27 H -0.288 1.288 28 H -0.266 1.266 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.143 0.857 33 H 0.161 0.839 34 H 0.148 0.852 35 H 0.130 0.870 36 H 0.421 0.579 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.031 0.969 40 H 0.071 0.929 41 H 0.038 0.962 42 H 0.042 0.958 43 H 0.070 0.930 44 H 0.033 0.967 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.169 2.548 19.714 20.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.014 3.986 3 H 0.136 0.864 4 O -0.224 6.224 5 C 0.053 3.947 6 C -0.169 4.169 7 C -0.091 4.091 8 C -0.172 4.172 9 C -0.089 4.089 10 C -0.207 4.207 11 C 0.053 3.947 12 H 0.141 0.859 13 N -0.854 5.854 14 S 2.709 3.291 15 O -0.981 6.981 16 O -0.969 6.969 17 C -0.717 4.717 18 C 0.069 3.931 19 C -0.219 4.219 20 C -0.217 4.217 21 C -0.553 4.553 22 H 0.083 0.917 23 C -0.181 4.181 24 N -0.547 5.547 25 Si 0.779 3.221 26 H -0.206 1.206 27 H -0.214 1.214 28 H -0.190 1.190 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.160 0.840 33 H 0.179 0.821 34 H 0.166 0.834 35 H 0.148 0.852 36 H 0.257 0.743 37 H 0.156 0.844 38 H 0.153 0.847 39 H 0.049 0.951 40 H 0.090 0.910 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.089 0.911 44 H 0.052 0.948 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.067 2.874 19.359 20.216 hybrid contribution 0.946 -0.674 -0.953 1.503 sum 6.013 2.200 18.406 19.488 Atomic orbital electron populations 1.21866 0.91349 1.03589 1.04002 1.23822 0.96861 0.95792 0.82151 0.86391 1.86839 1.34999 1.62458 1.38113 1.19831 0.87377 0.94530 0.92999 1.20578 0.92391 1.03364 1.00555 1.21289 0.96831 0.95859 0.95122 1.21398 0.99907 1.01868 0.94050 1.20704 0.92127 0.95021 1.01047 1.20979 0.97820 1.07506 0.94356 1.20962 0.85474 0.89157 0.99142 0.85929 1.55542 1.58285 1.42570 1.28983 1.04901 0.77114 0.73691 0.73407 1.93517 1.62581 1.56304 1.85732 1.93520 1.80148 1.38367 1.84842 1.30481 1.19186 1.12046 1.09977 1.17916 0.95342 0.92760 0.87116 1.22219 0.97287 0.98773 1.03574 1.22196 0.98431 0.97293 1.03778 1.21273 0.94092 1.48578 0.91355 0.91703 1.25654 0.98449 0.94992 0.99010 1.69943 1.25128 1.50059 1.09563 0.85641 0.80399 0.78040 0.78044 1.20558 1.21421 1.18986 0.91909 0.89711 0.90030 0.83958 0.82129 0.83399 0.85160 0.74298 0.84401 0.84655 0.95050 0.91018 0.94296 0.93839 0.91144 0.94843 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 9.01 71.98 0.65 -2.44 16 2 C 0.07 1.49 4.22 31.17 0.13 1.62 16 3 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 4 O -0.31 -7.11 10.81 -95.12 -1.03 -8.14 16 5 C 0.10 2.19 7.04 22.67 0.16 2.35 16 6 C -0.15 -2.70 10.06 22.45 0.23 -2.47 16 7 C -0.07 -1.10 10.02 22.21 0.22 -0.87 16 8 C -0.15 -2.65 10.07 22.31 0.22 -2.42 16 9 C -0.07 -1.49 10.03 22.18 0.22 -1.27 16 10 C -0.20 -4.62 5.93 -19.53 -0.12 -4.73 16 11 C 0.16 3.73 3.47 45.12 0.16 3.89 16 12 H 0.12 2.69 7.80 -2.38 -0.02 2.67 16 13 N -1.10 -28.55 4.07 -168.84 -0.69 -29.23 16 14 S 2.61 90.79 4.37 -56.49 -0.25 90.54 16 15 O -0.99 -40.51 15.68 -127.65 -2.00 -42.51 16 16 O -0.98 -37.61 15.38 -127.65 -1.96 -39.57 16 17 C -0.58 -21.12 4.98 71.98 0.36 -20.76 16 18 C 0.07 3.31 0.52 -52.93 -0.03 3.28 16 19 C -0.16 -7.89 7.77 71.98 0.56 -7.33 16 20 C -0.16 -7.63 7.78 71.98 0.56 -7.07 16 21 C -0.51 -25.90 8.01 25.60 0.21 -25.69 16 22 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 23 C 0.02 0.95 5.15 84.65 0.44 1.39 16 24 N -0.91 -49.53 9.35 21.45 0.20 -49.33 16 25 Si 0.95 41.27 29.54 68.60 2.03 43.30 16 26 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 27 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 28 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 29 H 0.06 1.33 7.11 -2.39 -0.02 1.32 16 30 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 32 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 33 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 34 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 35 H 0.13 2.69 8.06 -2.91 -0.02 2.66 16 36 H 0.42 10.04 8.40 -96.75 -0.81 9.22 16 37 H 0.14 4.31 8.13 -2.39 -0.02 4.29 16 38 H 0.14 4.44 8.14 -2.39 -0.02 4.42 16 39 H 0.03 1.47 5.45 -2.39 -0.01 1.46 16 40 H 0.07 3.85 6.07 -2.39 -0.01 3.84 16 41 H 0.04 1.81 8.14 -2.39 -0.02 1.80 16 42 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 44 H 0.03 1.52 5.48 -2.39 -0.01 1.51 16 45 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 Total: -1.00 -66.13 366.23 0.46 -65.67 By element: Atomic # 1 Polarization: 31.63 SS G_CDS: 0.19 Total: 31.82 kcal Atomic # 6 Polarization: -66.51 SS G_CDS: 3.97 Total: -62.54 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -0.49 Total: -78.57 kcal Atomic # 8 Polarization: -85.23 SS G_CDS: -4.99 Total: -90.23 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Atomic # 16 Polarization: 90.79 SS G_CDS: -0.25 Total: 90.54 kcal Total: -66.13 0.46 -65.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451555911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.402 kcal (2) G-P(sol) polarization free energy of solvation -66.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds