Wall clock time and date at job start Sat Apr 11 2020 05:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 110.66255 * 2 1 4 4 O 1.43772 * 110.74859 * 236.77920 * 2 1 3 5 5 C 1.36140 * 109.21819 * 213.68760 * 4 2 1 6 6 C 1.39292 * 129.89307 * 198.86450 * 5 4 2 7 7 C 1.37930 * 120.23868 * 180.64462 * 6 5 4 8 8 C 1.38287 * 120.35189 * 0.05620 * 7 6 5 9 9 C 1.38359 * 119.76755 * 359.78880 * 8 7 6 10 10 C 1.37736 * 119.97535 * 0.23997 * 9 8 7 11 11 C 1.51654 * 132.16063 * 181.29074 * 10 9 8 12 12 H 1.09000 * 111.10956 * 45.53552 * 11 10 9 13 13 N 1.46498 * 110.74507 * 281.90484 * 11 10 9 14 14 S 1.65597 * 119.99848 * 102.49571 * 13 11 10 15 15 O 1.42101 * 104.27394 * 181.07195 * 14 13 11 16 16 O 1.42093 * 104.27936 * 308.93159 * 14 13 11 17 17 C 1.81403 * 104.44931 * 65.00379 * 14 13 11 18 18 C 1.52997 * 109.47067 * 179.97438 * 17 14 13 19 19 C 1.53001 * 109.47378 * 299.99936 * 18 17 14 20 20 C 1.53003 * 109.46916 * 60.00295 * 18 17 14 21 21 C 1.50697 * 109.46975 * 179.97438 * 18 17 14 22 22 H 1.07999 * 120.00412 * 357.69701 * 21 18 17 23 23 C 1.37877 * 120.00131 * 177.70155 * 21 18 17 24 24 N 1.31519 * 120.00038 * 6.57334 * 23 21 18 25 25 Si 1.86800 * 120.00044 * 186.58246 * 23 21 18 26 26 H 1.48503 * 109.47393 * 84.99328 * 25 23 21 27 27 H 1.48502 * 109.46903 * 204.98815 * 25 23 21 28 28 H 1.48501 * 109.47293 * 324.98981 * 25 23 21 29 29 H 1.08994 * 109.47158 * 181.76525 * 1 2 3 30 30 H 1.08994 * 109.47274 * 301.76660 * 1 2 3 31 31 H 1.09000 * 109.46654 * 61.77071 * 1 2 3 32 32 H 1.07992 * 119.88044 * 0.67079 * 6 5 4 33 33 H 1.08001 * 119.82331 * 180.02562 * 7 6 5 34 34 H 1.07996 * 120.12030 * 179.81388 * 8 7 6 35 35 H 1.07998 * 120.00993 * 179.97438 * 9 8 7 36 36 H 0.96998 * 119.99799 * 282.49983 * 13 11 10 37 37 H 1.08997 * 109.47032 * 300.00011 * 17 14 13 38 38 H 1.09002 * 109.46739 * 59.99551 * 17 14 13 39 39 H 1.08998 * 109.46898 * 66.67065 * 19 18 17 40 40 H 1.09001 * 109.47252 * 186.67092 * 19 18 17 41 41 H 1.08995 * 109.47167 * 306.67048 * 19 18 17 42 42 H 1.08996 * 109.47420 * 60.00034 * 20 18 17 43 43 H 1.09003 * 109.46872 * 180.02562 * 20 18 17 44 44 H 1.09005 * 109.46899 * 299.99409 * 20 18 17 45 45 H 0.97001 * 120.00356 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9147 1.0198 0.0000 4 8 2.0394 -0.7366 -1.1247 5 6 3.1984 -1.3551 -0.7677 6 6 4.2175 -1.8717 -1.5644 7 6 5.3129 -2.4773 -0.9849 8 6 5.4092 -2.5782 0.3909 9 6 4.4028 -2.0647 1.1895 10 6 3.3078 -1.4601 0.6129 11 6 2.0820 -0.7940 1.2076 12 1 2.3560 -0.1235 2.0222 13 7 1.1150 -1.7967 1.6611 14 16 0.9834 -2.1503 3.2735 15 8 -0.0128 -3.1620 3.3301 16 8 2.3180 -2.4124 3.6849 17 6 0.3753 -0.6154 4.0253 18 6 0.2100 -0.8167 5.5329 19 6 -0.7933 -1.9428 5.7902 20 6 1.5607 -1.1862 6.1493 21 6 -0.2946 0.4586 6.1575 22 1 -0.4435 1.3369 5.5469 23 6 -0.5661 0.5042 7.5085 24 7 -0.2640 -0.5211 8.2749 25 14 -1.3632 2.0220 8.2503 26 1 -2.8379 1.9294 8.1017 27 1 -1.0156 2.1094 9.6914 28 1 -0.8700 3.2337 7.5477 29 1 -0.3633 -1.0271 0.0317 30 1 -0.3633 0.5410 0.8737 31 1 -0.3632 0.4861 -0.9055 32 1 4.1499 -1.7975 -2.6396 33 1 6.0994 -2.8753 -1.6090 34 1 6.2672 -3.0558 0.8406 35 1 4.4738 -2.1417 2.2644 36 1 0.5520 -2.2536 1.0168 37 1 1.0898 0.1870 3.8416 38 1 -0.5871 -0.3524 3.5863 39 1 -0.3753 -2.8879 5.4434 40 1 -1.0009 -2.0075 6.8582 41 1 -1.7182 -1.7354 5.2521 42 1 2.2754 -0.3839 5.9660 43 1 1.4428 -1.3300 7.2233 44 1 1.9261 -2.1085 5.6975 45 1 -0.4554 -0.4892 9.2253 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451555912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:09 Heat of formation + Delta-G solvation = -73.039406 kcal Electronic energy + Delta-G solvation = -28756.193570 eV Core-core repulsion = 24866.576678 eV Total energy + Delta-G solvation = -3889.616892 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.43631 -37.65409 -36.60126 -36.33324 -35.47699 -35.24989 -31.73416 -31.34454 -31.03347 -29.71608 -26.72949 -26.39090 -25.77060 -25.27236 -22.62846 -21.75293 -21.59404 -19.78872 -18.96778 -17.77287 -17.58966 -16.67189 -16.20725 -16.02364 -15.70477 -15.31260 -15.24373 -14.79934 -14.60185 -14.25542 -13.75511 -13.61831 -13.22425 -13.12673 -12.89206 -12.62425 -12.55667 -12.32701 -12.10011 -12.05755 -11.73486 -11.50019 -11.40429 -11.23800 -11.07697 -11.04968 -11.00698 -10.96212 -10.76259 -10.42423 -10.35356 -10.15622 -9.75900 -9.70663 -9.40514 -9.01944 -8.76184 -8.42398 -8.30406 -6.08565 -4.20411 0.73688 1.19633 1.32321 3.02208 3.08407 3.22936 3.30373 3.31255 3.68723 4.10360 4.22873 4.31581 4.39703 4.62561 4.66608 4.86544 4.93337 4.96991 5.00789 5.16363 5.18463 5.31329 5.44653 5.52969 5.55315 5.61196 5.66624 5.83072 5.92370 6.00350 6.22550 6.30243 6.37281 6.45197 6.54111 6.62719 6.73115 6.85514 6.94740 7.01802 7.08987 7.25849 7.43316 7.63013 7.92725 8.04659 8.28326 8.77853 9.45071 10.92537 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018782 B = 0.003459 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.456857 B = 8091.860270 C = 8507.831459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.071 3.929 3 H 0.100 0.900 4 O -0.300 6.300 5 C 0.112 3.888 6 C -0.148 4.148 7 C -0.081 4.081 8 C -0.155 4.155 9 C -0.046 4.046 10 C -0.188 4.188 11 C 0.170 3.830 12 H 0.114 0.886 13 N -1.114 6.114 14 S 2.590 3.410 15 O -0.962 6.962 16 O -0.959 6.959 17 C -0.582 4.582 18 C 0.083 3.917 19 C -0.161 4.161 20 C -0.164 4.164 21 C -0.504 4.504 22 H 0.059 0.941 23 C 0.065 3.935 24 N -0.882 5.882 25 Si 0.895 3.105 26 H -0.279 1.279 27 H -0.286 1.286 28 H -0.275 1.275 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.140 0.860 36 H 0.414 0.586 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.026 0.974 40 H 0.094 0.906 41 H 0.035 0.965 42 H 0.036 0.964 43 H 0.097 0.903 44 H 0.027 0.973 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.767 0.229 -17.424 18.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.014 3.986 3 H 0.118 0.882 4 O -0.215 6.215 5 C 0.066 3.934 6 C -0.167 4.167 7 C -0.100 4.100 8 C -0.173 4.173 9 C -0.065 4.065 10 C -0.190 4.190 11 C 0.061 3.939 12 H 0.132 0.868 13 N -0.870 5.870 14 S 2.688 3.312 15 O -0.953 6.953 16 O -0.949 6.949 17 C -0.716 4.716 18 C 0.081 3.919 19 C -0.219 4.219 20 C -0.222 4.222 21 C -0.543 4.543 22 H 0.077 0.923 23 C -0.137 4.137 24 N -0.519 5.519 25 Si 0.723 3.277 26 H -0.205 1.205 27 H -0.212 1.212 28 H -0.200 1.200 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.158 0.842 36 H 0.249 0.751 37 H 0.134 0.866 38 H 0.139 0.861 39 H 0.044 0.956 40 H 0.113 0.887 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.116 0.884 44 H 0.046 0.954 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.944 -0.600 -16.926 18.305 hybrid contribution -0.873 1.316 0.181 1.590 sum 6.071 0.717 -16.745 17.826 Atomic orbital electron populations 1.21865 0.91411 1.03888 1.03620 1.23684 0.96605 0.95344 0.82979 0.88181 1.86863 1.34352 1.62714 1.37547 1.19562 0.86878 0.94074 0.92838 1.20198 0.92680 1.04305 0.99503 1.20894 0.96703 0.97258 0.95104 1.21109 0.99955 1.02741 0.93524 1.20690 0.91052 0.93332 1.01415 1.21017 0.97679 1.06487 0.93863 1.20730 0.85817 0.89194 0.98121 0.86818 1.56053 1.49776 1.53600 1.27537 1.05791 0.75111 0.78100 0.72216 1.93568 1.61399 1.55535 1.84752 1.93531 1.36759 1.84236 1.80328 1.30566 1.11030 1.18265 1.11736 1.17926 0.93940 0.96749 0.83322 1.22212 0.98600 0.95566 1.05511 1.22311 0.96025 0.97896 1.05926 1.20916 1.44446 0.95760 0.93172 0.92278 1.24937 0.95346 0.96411 0.96993 1.69809 1.46355 1.30260 1.05511 0.86566 0.79830 0.83009 0.78323 1.20529 1.21179 1.19997 0.91085 0.89545 0.91021 0.85674 0.85323 0.85406 0.84190 0.75120 0.86552 0.86144 0.95558 0.88713 0.94571 0.94512 0.88418 0.95406 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.15 37.16 0.34 -1.00 16 2 C 0.07 0.73 4.20 -25.83 -0.11 0.63 16 3 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 4 O -0.30 -3.66 10.81 -20.18 -0.22 -3.88 16 5 C 0.11 1.42 7.03 -38.95 -0.27 1.15 16 6 C -0.15 -1.62 10.06 -39.30 -0.40 -2.01 16 7 C -0.08 -0.80 10.02 -39.68 -0.40 -1.20 16 8 C -0.16 -1.72 10.07 -39.52 -0.40 -2.11 16 9 C -0.05 -0.62 10.03 -39.72 -0.40 -1.02 16 10 C -0.19 -2.50 5.93 -104.10 -0.62 -3.12 16 11 C 0.17 2.09 3.42 -67.72 -0.23 1.86 16 12 H 0.11 1.27 7.34 -51.93 -0.38 0.89 16 13 N -1.11 -15.11 4.64 -4.71 -0.02 -15.13 16 14 S 2.59 45.99 4.41 -107.50 -0.47 45.52 16 15 O -0.96 -19.85 15.84 -57.54 -0.91 -20.76 16 16 O -0.96 -18.96 14.92 -57.54 -0.86 -19.82 16 17 C -0.58 -10.63 4.93 37.16 0.18 -10.45 16 18 C 0.08 1.94 0.52 -155.66 -0.08 1.86 16 19 C -0.16 -3.88 7.58 37.16 0.28 -3.60 16 20 C -0.16 -3.91 7.79 37.16 0.29 -3.62 16 21 C -0.50 -12.79 8.01 -34.44 -0.28 -13.06 16 22 H 0.06 1.45 7.75 -52.49 -0.41 1.04 16 23 C 0.07 1.69 5.09 -17.82 -0.09 1.60 16 24 N -0.88 -23.59 9.39 55.43 0.52 -23.07 16 25 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 29 H 0.07 0.65 6.31 -51.93 -0.33 0.32 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 35 H 0.14 1.99 7.53 -52.49 -0.40 1.59 16 36 H 0.41 5.06 7.19 -34.47 -0.25 4.81 16 37 H 0.12 1.86 7.55 -51.93 -0.39 1.47 16 38 H 0.12 1.96 8.14 -51.92 -0.42 1.54 16 39 H 0.03 0.60 5.96 -51.93 -0.31 0.29 16 40 H 0.09 2.47 5.99 -51.93 -0.31 2.15 16 41 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.10 2.54 6.01 -51.93 -0.31 2.23 16 44 H 0.03 0.63 5.47 -51.93 -0.28 0.34 16 45 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 363.13 15.07 5.47 5.47 Total: -1.00 -31.69 363.13 -9.99 -41.68 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -6.31 Total: 8.96 kcal Atomic # 6 Polarization: -31.92 SS G_CDS: -2.17 Total: -34.10 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.50 Total: -38.20 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -1.99 Total: -44.47 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: 45.99 SS G_CDS: -0.47 Total: 45.52 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.69 -9.99 -41.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451555912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.359 kcal (2) G-P(sol) polarization free energy of solvation -31.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds