Wall clock time and date at job start Sat Apr 11 2020 05:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47030 * 2 1 4 4 H 1.09000 * 109.47144 * 305.00399 * 3 2 1 5 5 C 1.50692 * 109.47086 * 184.99926 * 3 2 1 6 6 H 1.08000 * 120.00125 * 240.00032 * 5 3 2 7 7 C 1.37878 * 120.00014 * 60.00493 * 5 3 2 8 8 N 1.31516 * 120.00084 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99963 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47216 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46953 * 119.99956 * 9 7 5 12 12 H 1.48498 * 109.47156 * 239.99389 * 9 7 5 13 13 N 1.46509 * 109.46838 * 64.99977 * 3 2 1 14 14 C 1.34767 * 120.00228 * 274.99713 * 13 3 2 15 15 O 1.21555 * 120.00108 * 0.02562 * 14 13 3 16 16 C 1.47845 * 120.00359 * 180.02562 * 14 13 3 17 17 C 1.39604 * 120.13964 * 0.02562 * 16 14 13 18 18 C 1.37934 * 119.84877 * 179.97438 * 17 16 14 19 19 C 1.38377 * 120.14786 * 359.74127 * 18 17 16 20 20 C 1.38337 * 120.29005 * 0.51779 * 19 18 17 21 21 S 1.76203 * 119.92665 * 179.76516 * 20 19 18 22 22 O 1.42100 * 104.28012 * 153.65163 * 21 20 19 23 23 O 1.42100 * 104.27885 * 25.79274 * 21 20 19 24 24 C 1.81404 * 104.44838 * 269.72188 * 21 20 19 25 25 C 1.53002 * 109.46960 * 180.02562 * 24 21 20 26 26 C 1.53000 * 109.46946 * 60.00112 * 24 21 20 27 27 C 1.37979 * 120.14624 * 359.48293 * 20 19 18 28 28 H 1.09000 * 109.47501 * 299.99595 * 1 2 3 29 29 H 1.09000 * 109.47478 * 59.99743 * 1 2 3 30 30 H 1.09004 * 109.47020 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47001 * 240.00483 * 2 1 3 32 32 H 1.08996 * 109.47014 * 120.00246 * 2 1 3 33 33 H 0.96998 * 120.00160 * 180.02562 * 8 7 5 34 34 H 0.96999 * 119.99264 * 95.00106 * 13 3 2 35 35 H 1.07999 * 120.07382 * 359.95336 * 17 16 14 36 36 H 1.08003 * 119.92723 * 180.02562 * 18 17 16 37 37 H 1.08001 * 119.85442 * 180.27847 * 19 18 17 38 38 H 1.09002 * 109.47124 * 299.99881 * 24 21 20 39 39 H 1.09002 * 109.47075 * 299.99314 * 25 24 21 40 40 H 1.08996 * 109.47407 * 60.00271 * 25 24 21 41 41 H 1.09000 * 109.46986 * 180.02562 * 25 24 21 42 42 H 1.09001 * 109.47194 * 299.99756 * 26 24 21 43 43 H 1.08992 * 109.47399 * 59.99928 * 26 24 21 44 44 H 1.09004 * 109.46724 * 180.02562 * 26 24 21 45 45 H 1.08005 * 120.07248 * 180.27834 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1471 1.8889 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8814 -1.3818 10 1 6.5986 1.5474 -0.1947 11 1 6.4970 -0.5173 -1.4631 12 1 6.3989 1.6168 -2.6102 13 7 1.6523 2.0975 1.2519 14 6 0.4351 2.6643 1.3671 15 8 -0.3414 2.6319 0.4324 16 6 0.0441 3.3258 2.6302 17 6 0.9338 3.3653 3.7053 18 6 0.5630 3.9844 4.8808 19 6 -0.6856 4.5702 4.9939 20 6 -1.5738 4.5299 3.9341 21 16 -3.1636 5.2735 4.0908 22 8 -3.5270 5.6078 2.7583 23 8 -2.9834 6.2817 5.0759 24 6 -4.2239 3.9455 4.7255 25 6 -5.6488 4.4728 4.9057 26 6 -3.6841 3.4621 6.0731 27 6 -1.2155 3.9137 2.7527 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.8292 -0.0616 -2.9496 34 1 2.2719 2.1231 1.9978 35 1 1.9100 2.9118 3.6170 36 1 1.2504 4.0161 5.7132 37 1 -0.9693 5.0576 5.9150 38 1 -4.2304 3.1163 4.0181 39 1 -5.6426 5.3021 5.6130 40 1 -6.0331 4.8169 3.9456 41 1 -6.2858 3.6750 5.2876 42 1 -2.6691 3.0864 5.9443 43 1 -3.6776 4.2913 6.7805 44 1 -4.3210 2.6638 6.4543 45 1 -1.9082 3.8869 1.9245 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547779140.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:35 Heat of formation + Delta-G solvation = -90.764298 kcal Electronic energy + Delta-G solvation = -27519.938216 eV Core-core repulsion = 23629.552715 eV Total energy + Delta-G solvation = -3890.385501 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.99427 -38.22696 -37.33149 -36.13574 -35.43262 -35.15205 -32.76113 -31.75089 -31.29329 -30.49771 -27.82393 -27.06430 -24.20837 -23.53341 -22.79306 -22.70194 -20.72105 -19.57893 -19.02596 -18.38695 -17.06899 -16.72757 -16.27391 -16.09054 -15.70957 -15.45790 -15.04829 -14.74164 -14.55884 -14.31329 -14.02909 -13.77009 -13.59553 -13.35142 -13.04606 -12.80378 -12.74971 -12.44643 -12.27490 -12.19786 -12.06312 -11.89303 -11.85404 -11.74316 -11.54643 -11.30990 -11.04978 -10.99909 -10.89789 -10.56390 -10.36492 -10.25128 -9.70726 -9.57070 -9.23342 -9.13046 -9.10110 -8.56302 -7.93070 -6.17795 -4.27653 -0.20560 0.55039 0.93916 2.60969 2.91148 3.20045 3.28208 3.30265 3.59786 3.74632 3.90380 3.96704 4.11138 4.28121 4.34233 4.61975 4.65112 4.71296 4.89016 5.00817 5.09481 5.10972 5.14077 5.14729 5.24874 5.34759 5.49548 5.53508 5.60104 5.67632 5.83897 6.04480 6.10470 6.33667 6.39884 6.55664 6.60100 6.97685 7.13722 7.28176 7.34636 7.55249 7.65541 7.83183 8.11360 8.53693 8.69839 8.98643 9.39621 10.87598 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022358 B = 0.002657 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.032889 B =10533.980026 C =11006.241924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.052 0.948 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.699 5.699 14 C 0.540 3.460 15 O -0.538 6.538 16 C -0.138 4.138 17 C -0.036 4.036 18 C -0.146 4.146 19 C -0.012 4.012 20 C -0.668 4.668 21 S 2.495 3.505 22 O -0.932 6.932 23 O -0.936 6.936 24 C -0.571 4.571 25 C -0.145 4.145 26 C -0.144 4.144 27 C 0.028 3.972 28 H 0.037 0.963 29 H 0.051 0.949 30 H 0.023 0.977 31 H 0.101 0.899 32 H 0.031 0.969 33 H 0.265 0.735 34 H 0.387 0.613 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.473 4.929 18.903 23.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.070 0.930 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.347 5.347 14 C 0.324 3.676 15 O -0.417 6.417 16 C -0.142 4.142 17 C -0.055 4.055 18 C -0.164 4.164 19 C -0.031 4.031 20 C -0.755 4.755 21 S 2.675 3.325 22 O -0.929 6.929 23 O -0.933 6.933 24 C -0.681 4.681 25 C -0.204 4.204 26 C -0.202 4.202 27 C 0.008 3.992 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.119 0.881 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.220 0.780 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.160 0.840 38 H 0.160 0.840 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -13.179 5.626 17.801 22.852 hybrid contribution 1.795 -0.952 0.313 2.056 sum -11.384 4.674 18.114 21.899 Atomic orbital electron populations 1.21856 0.98340 0.98142 1.01272 1.21938 0.92634 0.99646 1.02395 1.18868 0.94397 0.89250 0.80695 0.93015 1.21234 0.90548 1.39205 1.06422 0.92041 1.24886 0.98688 0.94733 0.95333 1.69898 1.35108 1.37452 1.09329 0.86392 0.84734 0.77786 0.78171 1.19755 1.20844 1.20834 1.46476 1.14148 1.55348 1.18735 1.18058 0.83294 0.79584 0.86614 1.90770 1.51435 1.59872 1.39667 1.20511 0.95573 1.02294 0.95821 1.21781 0.98626 0.93135 0.91924 1.21234 0.96963 0.99869 0.98370 1.21057 0.92795 0.92505 0.96725 1.30452 1.23478 1.19721 1.01841 1.05680 0.75184 0.76554 0.75060 1.93600 1.82760 1.81501 1.35015 1.93545 1.85076 1.52880 1.61803 1.30029 1.10319 1.18370 1.09345 1.21682 0.92164 1.02807 1.03728 1.21699 1.02128 1.03244 0.93125 1.21071 0.95631 0.87592 0.94875 0.94378 0.92995 0.95749 0.88126 0.94996 0.92528 0.77953 0.84456 0.84459 0.83952 0.83962 0.90788 0.90675 0.89647 0.90883 0.90435 0.90139 0.82894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.51 37.16 0.32 -2.71 16 2 C -0.13 -3.01 5.45 -26.73 -0.15 -3.16 16 3 C 0.27 6.60 2.24 -69.08 -0.15 6.45 16 4 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 5 C -0.54 -13.77 8.73 -34.44 -0.30 -14.07 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.23 11.29 55.43 0.63 -23.61 16 9 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 10 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 N -0.70 -14.04 4.97 -55.88 -0.28 -14.32 16 14 C 0.54 10.64 6.34 -12.33 -0.08 10.56 16 15 O -0.54 -12.43 13.48 5.32 0.07 -12.36 16 16 C -0.14 -2.14 5.87 -104.97 -0.62 -2.76 16 17 C -0.04 -0.43 9.54 -39.18 -0.37 -0.81 16 18 C -0.15 -1.42 10.03 -39.64 -0.40 -1.82 16 19 C -0.01 -0.12 8.54 -39.49 -0.34 -0.46 16 20 C -0.67 -7.93 5.05 -39.64 -0.20 -8.13 16 21 S 2.50 27.18 4.65 -107.50 -0.50 26.68 16 22 O -0.93 -13.55 17.12 -57.54 -0.98 -14.54 16 23 O -0.94 -11.64 16.99 -57.54 -0.98 -12.62 16 24 C -0.57 -4.04 3.44 -26.73 -0.09 -4.13 16 25 C -0.15 -0.87 9.20 37.16 0.34 -0.53 16 26 C -0.14 -0.82 8.98 37.16 0.33 -0.49 16 27 C 0.03 0.41 9.01 -39.19 -0.35 0.06 16 28 H 0.04 0.80 5.64 -51.93 -0.29 0.51 16 29 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.39 6.59 6.57 -40.82 -0.27 6.32 16 35 H 0.14 1.42 6.41 -52.49 -0.34 1.08 16 36 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 37 H 0.14 1.08 7.55 -52.49 -0.40 0.68 16 38 H 0.14 0.85 8.14 -51.92 -0.42 0.43 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.40 6.72 -51.93 -0.35 0.05 16 43 H 0.08 0.39 8.11 -51.93 -0.42 -0.03 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.15 2.34 7.16 -52.48 -0.38 1.96 16 LS Contribution 376.24 15.07 5.67 5.67 Total: -1.00 -34.06 376.24 -10.02 -44.08 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -6.47 Total: 6.13 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: -2.15 Total: -20.33 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.35 Total: -37.93 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -1.89 Total: -39.51 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 27.18 SS G_CDS: -0.50 Total: 26.68 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.06 -10.02 -44.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547779140.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.686 kcal (2) G-P(sol) polarization free energy of solvation -34.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds