Wall clock time and date at job start Sat Apr 11 2020 05:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47030 * 2 1 4 4 H 1.09000 * 109.47144 * 305.00399 * 3 2 1 5 5 C 1.50692 * 109.47086 * 184.99926 * 3 2 1 6 6 H 1.08000 * 120.00125 * 240.00032 * 5 3 2 7 7 C 1.37878 * 120.00014 * 60.00493 * 5 3 2 8 8 N 1.31516 * 120.00084 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99963 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47216 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46953 * 119.99956 * 9 7 5 12 12 H 1.48498 * 109.47156 * 239.99389 * 9 7 5 13 13 N 1.46509 * 109.46838 * 64.99977 * 3 2 1 14 14 C 1.34767 * 120.00228 * 274.99713 * 13 3 2 15 15 O 1.21555 * 120.00108 * 0.02562 * 14 13 3 16 16 C 1.47845 * 120.00359 * 180.02562 * 14 13 3 17 17 C 1.39604 * 120.13964 * 0.02562 * 16 14 13 18 18 C 1.37934 * 119.84877 * 179.97438 * 17 16 14 19 19 C 1.38377 * 120.14786 * 359.74127 * 18 17 16 20 20 C 1.38337 * 120.29005 * 0.51779 * 19 18 17 21 21 S 1.76203 * 119.92665 * 179.76516 * 20 19 18 22 22 O 1.42100 * 104.28012 * 153.65163 * 21 20 19 23 23 O 1.42100 * 104.27885 * 25.79274 * 21 20 19 24 24 C 1.81404 * 104.44838 * 269.72188 * 21 20 19 25 25 C 1.53002 * 109.46960 * 180.02562 * 24 21 20 26 26 C 1.53000 * 109.46946 * 60.00112 * 24 21 20 27 27 C 1.37979 * 120.14624 * 359.48293 * 20 19 18 28 28 H 1.09000 * 109.47501 * 299.99595 * 1 2 3 29 29 H 1.09000 * 109.47478 * 59.99743 * 1 2 3 30 30 H 1.09004 * 109.47020 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47001 * 240.00483 * 2 1 3 32 32 H 1.08996 * 109.47014 * 120.00246 * 2 1 3 33 33 H 0.96998 * 120.00160 * 180.02562 * 8 7 5 34 34 H 0.96999 * 119.99264 * 95.00106 * 13 3 2 35 35 H 1.07999 * 120.07382 * 359.95336 * 17 16 14 36 36 H 1.08003 * 119.92723 * 180.02562 * 18 17 16 37 37 H 1.08001 * 119.85442 * 180.27847 * 19 18 17 38 38 H 1.09002 * 109.47124 * 299.99881 * 24 21 20 39 39 H 1.09002 * 109.47075 * 299.99314 * 25 24 21 40 40 H 1.08996 * 109.47407 * 60.00271 * 25 24 21 41 41 H 1.09000 * 109.46986 * 180.02562 * 25 24 21 42 42 H 1.09001 * 109.47194 * 299.99756 * 26 24 21 43 43 H 1.08992 * 109.47399 * 59.99928 * 26 24 21 44 44 H 1.09004 * 109.46724 * 180.02562 * 26 24 21 45 45 H 1.08005 * 120.07248 * 180.27834 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1471 1.8889 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8814 -1.3818 10 1 6.5986 1.5474 -0.1947 11 1 6.4970 -0.5173 -1.4631 12 1 6.3989 1.6168 -2.6102 13 7 1.6523 2.0975 1.2519 14 6 0.4351 2.6643 1.3671 15 8 -0.3414 2.6319 0.4324 16 6 0.0441 3.3258 2.6302 17 6 0.9338 3.3653 3.7053 18 6 0.5630 3.9844 4.8808 19 6 -0.6856 4.5702 4.9939 20 6 -1.5738 4.5299 3.9341 21 16 -3.1636 5.2735 4.0908 22 8 -3.5270 5.6078 2.7583 23 8 -2.9834 6.2817 5.0759 24 6 -4.2239 3.9455 4.7255 25 6 -5.6488 4.4728 4.9057 26 6 -3.6841 3.4621 6.0731 27 6 -1.2155 3.9137 2.7527 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.8292 -0.0616 -2.9496 34 1 2.2719 2.1231 1.9978 35 1 1.9100 2.9118 3.6170 36 1 1.2504 4.0161 5.7132 37 1 -0.9693 5.0576 5.9150 38 1 -4.2304 3.1163 4.0181 39 1 -5.6426 5.3021 5.6130 40 1 -6.0331 4.8169 3.9456 41 1 -6.2858 3.6750 5.2876 42 1 -2.6691 3.0864 5.9443 43 1 -3.6776 4.2913 6.7805 44 1 -4.3210 2.6638 6.4543 45 1 -1.9082 3.8869 1.9245 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547779140.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:35 Heat of formation + Delta-G solvation = -114.768778 kcal Electronic energy + Delta-G solvation = -27520.979128 eV Core-core repulsion = 23629.552715 eV Total energy + Delta-G solvation = -3891.426413 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.31107 -39.52351 -38.27093 -37.07745 -36.98063 -35.96818 -34.48896 -33.33169 -32.27987 -31.94072 -28.99214 -28.23883 -25.61400 -24.77425 -24.11005 -23.41372 -22.16179 -21.31339 -20.20888 -19.44434 -18.34185 -17.81219 -17.50942 -17.09768 -16.97682 -16.87545 -16.33642 -16.24349 -15.78286 -15.34109 -15.11895 -14.84523 -14.61286 -14.35059 -14.18883 -14.15790 -13.71392 -13.48113 -13.30624 -13.27116 -13.23384 -13.19115 -13.08103 -12.90060 -12.76429 -12.71322 -12.36926 -12.33127 -12.17344 -12.08763 -11.91239 -11.62011 -11.27495 -11.07033 -10.85697 -10.55965 -10.50303 -10.17128 -9.69166 -8.17973 -6.35624 -1.01006 -0.41933 -0.07788 1.43381 1.44967 1.56314 1.72141 1.81815 2.29482 2.51250 2.57055 2.88649 3.05533 3.12056 3.56718 3.60906 3.71064 3.78752 3.92618 4.06228 4.17785 4.30359 4.45459 4.48070 4.54483 4.63085 4.65648 4.72835 4.74292 4.75222 4.89665 4.91229 5.03959 5.09893 5.12826 5.14638 5.23839 5.24164 5.40697 5.51164 5.57262 5.65486 5.76910 5.88832 6.13797 6.71462 6.87768 7.29549 7.46809 8.87757 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022358 B = 0.002657 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.032889 B =10533.980026 C =11006.241924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.120 4.120 3 C 0.277 3.723 4 H -0.002 1.002 5 C -0.548 4.548 6 H 0.074 0.926 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.971 3.029 10 H -0.259 1.259 11 H -0.278 1.278 12 H -0.286 1.286 13 N -0.695 5.695 14 C 0.537 3.463 15 O -0.584 6.584 16 C -0.163 4.163 17 C -0.034 4.034 18 C -0.130 4.130 19 C -0.003 4.003 20 C -0.668 4.668 21 S 2.488 3.512 22 O -0.982 6.982 23 O -0.954 6.954 24 C -0.543 4.543 25 C -0.157 4.157 26 C -0.152 4.152 27 C 0.010 3.990 28 H 0.042 0.958 29 H 0.024 0.976 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.044 0.956 33 H 0.265 0.735 34 H 0.404 0.596 35 H 0.155 0.845 36 H 0.183 0.817 37 H 0.176 0.824 38 H 0.154 0.846 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.110 0.890 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.764 4.662 23.103 26.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.016 0.984 5 C -0.586 4.586 6 H 0.092 0.908 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.796 3.204 10 H -0.183 1.183 11 H -0.204 1.204 12 H -0.213 1.213 13 N -0.344 5.344 14 C 0.325 3.675 15 O -0.466 6.466 16 C -0.167 4.167 17 C -0.052 4.052 18 C -0.148 4.148 19 C -0.021 4.021 20 C -0.754 4.754 21 S 2.673 3.327 22 O -0.979 6.979 23 O -0.952 6.952 24 C -0.657 4.657 25 C -0.216 4.216 26 C -0.210 4.210 27 C -0.010 4.010 28 H 0.061 0.939 29 H 0.043 0.957 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.240 0.760 35 H 0.173 0.827 36 H 0.200 0.800 37 H 0.193 0.807 38 H 0.172 0.828 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.129 0.871 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.120 0.880 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.428 5.401 22.029 25.863 hybrid contribution 1.451 -0.833 -0.891 1.896 sum -10.977 4.568 21.138 24.252 Atomic orbital electron populations 1.21700 0.97126 0.99261 1.00203 1.21780 0.93635 0.98920 1.01559 1.18448 0.93904 0.89297 0.80990 0.98434 1.21581 0.91152 1.38993 1.06842 0.90811 1.25777 1.03360 0.94350 0.94990 1.70054 1.37057 1.38291 1.09895 0.85313 0.79044 0.77856 0.78210 1.18258 1.20351 1.21270 1.46174 1.14940 1.55413 1.17864 1.18712 0.82367 0.78720 0.87737 1.90739 1.52609 1.61454 1.41798 1.20147 0.97090 1.04501 0.94969 1.22009 0.98578 0.93081 0.91581 1.21712 0.97214 0.97555 0.98365 1.21586 0.92377 0.91136 0.97034 1.30536 1.24576 1.18965 1.01328 1.05841 0.75280 0.77613 0.74003 1.93540 1.83290 1.83246 1.37838 1.93509 1.85417 1.54804 1.61432 1.29833 1.09446 1.15936 1.10458 1.21886 0.91501 1.04099 1.04070 1.21879 1.02813 1.04315 0.91975 1.20926 0.95302 0.89162 0.95618 0.93871 0.95662 0.93331 0.90838 0.93674 0.92568 0.75976 0.82714 0.80009 0.80700 0.82792 0.89935 0.91107 0.87102 0.90405 0.89446 0.88035 0.85223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.67 8.51 71.98 0.61 -5.05 16 2 C -0.12 -5.85 5.45 30.59 0.17 -5.69 16 3 C 0.28 14.11 2.24 44.24 0.10 14.21 16 4 H 0.00 -0.14 7.58 -2.39 -0.02 -0.16 16 5 C -0.55 -28.47 8.73 25.60 0.22 -28.24 16 6 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 7 C 0.02 0.82 5.29 84.65 0.45 1.27 16 8 N -0.91 -51.99 11.29 21.45 0.24 -51.75 16 9 Si 0.97 41.48 29.54 68.60 2.03 43.51 16 10 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 11 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 12 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 13 N -0.69 -28.49 4.97 -448.98 -2.23 -30.72 16 14 C 0.54 22.07 6.34 86.79 0.55 22.62 16 15 O -0.58 -28.95 13.48 -3.89 -0.05 -29.00 16 16 C -0.16 -5.09 5.87 -20.09 -0.12 -5.21 16 17 C -0.03 -0.74 9.54 22.53 0.21 -0.52 16 18 C -0.13 -1.99 10.03 22.23 0.22 -1.77 16 19 C 0.00 -0.04 8.54 22.33 0.19 0.15 16 20 C -0.67 -15.19 5.05 22.23 0.11 -15.08 16 21 S 2.49 53.10 4.65 -56.49 -0.26 52.84 16 22 O -0.98 -30.20 17.12 -127.65 -2.19 -32.39 16 23 O -0.95 -22.54 16.99 -127.65 -2.17 -24.71 16 24 C -0.54 -6.52 3.44 30.60 0.11 -6.41 16 25 C -0.16 -1.52 9.20 71.98 0.66 -0.86 16 26 C -0.15 -1.17 8.98 71.98 0.65 -0.52 16 27 C 0.01 0.30 9.01 22.52 0.20 0.50 16 28 H 0.04 1.87 5.64 -2.39 -0.01 1.86 16 29 H 0.02 1.23 7.84 -2.39 -0.02 1.21 16 30 H 0.05 1.90 8.14 -2.38 -0.02 1.89 16 31 H 0.07 4.02 5.95 -2.39 -0.01 4.00 16 32 H 0.04 2.03 8.14 -2.39 -0.02 2.02 16 33 H 0.27 14.26 8.31 -92.71 -0.77 13.48 16 34 H 0.40 13.48 6.57 -92.71 -0.61 12.87 16 35 H 0.16 2.74 6.41 -2.91 -0.02 2.72 16 36 H 0.18 1.24 8.06 -2.91 -0.02 1.21 16 37 H 0.18 1.81 7.55 -2.91 -0.02 1.79 16 38 H 0.15 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.08 0.55 6.72 -2.39 -0.02 0.53 16 43 H 0.09 0.54 8.11 -2.39 -0.02 0.52 16 44 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 45 H 0.13 4.39 7.16 -2.91 -0.02 4.37 16 Total: -1.00 -79.35 376.24 0.10 -79.24 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: 0.40 Total: 23.59 kcal Atomic # 6 Polarization: -34.95 SS G_CDS: 4.34 Total: -30.61 kcal Atomic # 7 Polarization: -80.48 SS G_CDS: -1.99 Total: -82.47 kcal Atomic # 8 Polarization: -81.69 SS G_CDS: -4.41 Total: -86.10 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Atomic # 16 Polarization: 53.10 SS G_CDS: -0.26 Total: 52.84 kcal Total: -79.35 0.10 -79.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547779140.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.526 kcal (2) G-P(sol) polarization free energy of solvation -79.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds