Wall clock time and date at job start Sat Apr 11 2020 05:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42898 * 114.00474 * 2 1 4 4 H 1.09007 * 109.46053 * 330.03045 * 3 2 1 5 5 C 1.53042 * 109.45953 * 89.99475 * 3 2 1 6 6 C 1.53194 * 109.31205 * 181.37348 * 5 3 2 7 7 N 1.46925 * 108.77941 * 305.37133 * 6 5 3 8 8 S 1.65597 * 120.63113 * 233.33663 * 7 6 5 9 9 O 1.42101 * 106.40315 * 203.53762 * 8 7 6 10 10 O 1.42105 * 106.40295 * 336.45518 * 8 7 6 11 11 C 1.76197 * 107.22288 * 89.99530 * 8 7 6 12 12 C 1.38657 * 119.87226 * 89.99726 * 11 8 7 13 13 C 1.38623 * 120.49976 * 179.97438 * 12 11 8 14 14 C 1.37644 * 120.24638 * 359.97438 * 13 12 11 15 15 C 1.40698 * 119.74439 * 0.02562 * 14 13 12 16 16 C 1.41393 * 120.24096 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00122 * 155.23171 * 16 15 14 18 18 C 1.39944 * 119.99997 * 335.22772 * 16 15 14 19 19 N 1.30824 * 119.99803 * 342.28757 * 18 16 15 20 20 Si 1.86799 * 119.99977 * 162.29264 * 18 16 15 21 21 H 1.48502 * 109.47176 * 60.00006 * 20 18 16 22 22 H 1.48502 * 109.47256 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47143 * 299.99721 * 20 18 16 24 24 C 1.37600 * 119.87823 * 269.72635 * 11 8 7 25 25 C 1.46922 * 118.73736 * 53.60323 * 7 6 5 26 26 C 1.53036 * 109.45267 * 210.06202 * 3 2 1 27 27 H 1.08999 * 109.49878 * 298.57143 * 26 3 2 28 28 C 1.52999 * 109.49931 * 58.67147 * 26 3 2 29 29 H 1.08996 * 109.47555 * 59.99942 * 1 2 3 30 30 H 1.09000 * 109.47322 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47476 * 300.00009 * 1 2 3 32 32 H 1.09005 * 109.49175 * 61.42992 * 5 3 2 33 33 H 1.08995 * 109.50528 * 301.32976 * 5 3 2 34 34 H 1.09006 * 109.58558 * 185.57957 * 6 5 3 35 35 H 1.09000 * 109.58462 * 65.15884 * 6 5 3 36 36 H 1.08000 * 119.75290 * 359.96060 * 12 11 8 37 37 H 1.07996 * 119.87337 * 180.02562 * 13 12 11 38 38 H 1.07993 * 120.12217 * 180.02562 * 14 13 12 39 39 H 0.97006 * 119.99637 * 180.02562 * 19 18 16 40 40 H 1.07999 * 120.12424 * 0.02562 * 24 11 8 41 41 H 1.09002 * 109.58220 * 66.18517 * 25 7 6 42 42 H 1.09008 * 109.58566 * 186.60365 * 25 7 6 43 43 H 1.09000 * 109.47204 * 59.99727 * 28 26 3 44 44 H 1.08992 * 109.47376 * 180.02562 * 28 26 3 45 45 H 1.09002 * 109.46705 * 299.99949 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3446 1.9994 -0.5134 5 6 2.2175 1.7712 1.4430 6 6 2.8089 3.1844 1.4392 7 7 4.0312 3.1834 0.6239 8 16 5.4574 3.7559 1.2407 9 8 6.2527 4.1363 0.1262 10 8 5.1108 4.6500 2.2895 11 6 6.2814 2.3955 1.9988 12 6 7.1536 1.6150 1.2553 13 6 7.8092 0.5420 1.8387 14 6 7.6006 0.2401 3.1653 15 6 6.7177 1.0251 3.9294 16 6 6.4961 0.7248 5.2932 17 1 6.1686 1.4997 5.9705 18 6 6.7010 -0.5765 5.7654 19 7 6.7549 -1.5768 4.9239 20 14 6.8975 -0.8854 7.5971 21 1 5.6751 -0.4337 8.3092 22 1 7.1007 -2.3370 7.8354 23 1 8.0723 -0.1311 8.1031 24 6 6.0612 2.1148 3.3278 25 6 3.9627 2.6703 -0.7512 26 6 3.3585 1.2629 -0.7229 27 1 4.0328 0.5880 -0.1957 28 6 3.1544 0.7659 -2.1554 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 2.9027 1.0915 1.9497 33 1 1.2602 1.7789 1.9640 34 1 3.0505 3.4821 2.4596 35 1 2.0868 3.8815 1.0142 36 1 7.3234 1.8448 0.2138 37 1 8.4867 -0.0589 1.2503 38 1 8.1127 -0.5961 3.6179 39 1 6.8966 -2.4789 5.2512 40 1 5.3844 2.7264 3.9060 41 1 3.3346 3.3256 -1.3547 42 1 4.9657 2.6290 -1.1761 43 1 2.4811 1.4422 -2.6822 44 1 4.1149 0.7354 -2.6697 45 1 2.7218 -0.2344 -2.1348 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590762058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:16 Heat of formation + Delta-G solvation = -128.883284 kcal Electronic energy + Delta-G solvation = -28683.199341 eV Core-core repulsion = 24791.160877 eV Total energy + Delta-G solvation = -3892.038464 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.40443 -39.44752 -38.35800 -37.72456 -36.93390 -35.67824 -34.10002 -32.29628 -31.92393 -31.59461 -27.92429 -27.38916 -27.30849 -24.82251 -23.65891 -23.20739 -22.79903 -21.25348 -20.20294 -19.54778 -18.63832 -17.75873 -17.49085 -17.20971 -16.88473 -16.52527 -16.31927 -15.94745 -15.80758 -15.23576 -15.16967 -14.97386 -14.57064 -14.31126 -14.25195 -13.94623 -13.71317 -13.55482 -13.34038 -13.24379 -13.10869 -13.05901 -12.90037 -12.83705 -12.76836 -12.62062 -12.57075 -12.24516 -12.12099 -11.89093 -11.80619 -11.57577 -11.33563 -11.30685 -11.15075 -10.39873 -10.09563 -9.80766 -9.56908 -8.74188 -6.46479 -0.55424 0.40236 0.83737 1.35560 1.45018 1.48692 2.00785 2.16105 2.55242 2.71998 2.88145 3.32733 3.49217 3.61110 3.83416 3.98727 4.03579 4.19294 4.28089 4.35190 4.41136 4.44388 4.52985 4.57925 4.59924 4.70029 4.71986 4.80453 4.81941 4.87917 4.90486 4.91817 5.04511 5.06872 5.16728 5.19006 5.23062 5.35515 5.39922 5.45935 5.54881 5.64531 5.87369 5.92311 6.08940 6.37302 6.51012 6.78563 6.83553 8.23676 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010778 B = 0.004407 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.255026 B = 6352.144187 C = 7501.015436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.102 3.898 4 H 0.090 0.910 5 C -0.157 4.157 6 C 0.122 3.878 7 N -0.993 5.993 8 S 2.712 3.288 9 O -0.981 6.981 10 O -0.989 6.989 11 C -0.639 4.639 12 C -0.149 4.149 13 C -0.123 4.123 14 C -0.142 4.142 15 C 0.064 3.936 16 C -0.499 4.499 17 H 0.079 0.921 18 C 0.038 3.962 19 N -0.822 5.822 20 Si 0.982 3.018 21 H -0.259 1.259 22 H -0.265 1.265 23 H -0.261 1.261 24 C -0.144 4.144 25 C 0.124 3.876 26 C -0.107 4.107 27 H 0.053 0.947 28 C -0.135 4.135 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.109 0.891 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.112 0.888 39 H 0.292 0.708 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.092 0.908 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.871 2.842 -10.680 16.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C 0.044 3.956 4 H 0.108 0.892 5 C -0.197 4.197 6 C -0.003 4.003 7 N -0.832 5.832 8 S 2.805 3.195 9 O -0.971 6.971 10 O -0.979 6.979 11 C -0.727 4.727 12 C -0.169 4.169 13 C -0.142 4.142 14 C -0.162 4.162 15 C 0.061 3.939 16 C -0.528 4.528 17 H 0.097 0.903 18 C -0.177 4.177 19 N -0.448 5.448 20 Si 0.803 3.197 21 H -0.183 1.183 22 H -0.189 1.189 23 H -0.185 1.185 24 C -0.165 4.165 25 C 0.000 4.000 26 C -0.127 4.127 27 H 0.071 0.929 28 C -0.193 4.193 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.127 0.873 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.130 0.870 39 H 0.102 0.898 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.111 0.889 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.460 3.300 -10.751 16.056 hybrid contribution 0.341 -1.165 1.448 1.889 sum -11.118 2.135 -9.304 14.654 Atomic orbital electron populations 1.22947 0.79845 1.03422 1.00902 1.87926 1.21181 1.28473 1.95059 1.22082 0.94512 0.84660 0.94298 0.89205 1.22429 1.02022 0.96640 0.98587 1.21582 0.85807 0.97319 0.95601 1.57615 1.23210 1.79989 1.22411 1.01108 0.72467 0.73596 0.72287 1.93481 1.69102 1.81949 1.52588 1.93487 1.83733 1.62473 1.58216 1.30376 1.15315 1.22011 1.05044 1.20424 1.00434 0.97018 0.99043 1.21135 1.00284 0.97554 0.95255 1.21618 0.98840 1.01285 0.94451 1.18027 0.90248 0.91507 0.94114 1.19825 1.42383 0.96118 0.94443 0.90314 1.26743 0.91063 0.94803 1.05111 1.69822 1.34577 1.01201 1.39163 0.85243 0.80127 0.78261 0.76098 1.18279 1.18913 1.18506 1.20812 1.01955 1.00798 0.92962 1.21754 1.03498 0.94025 0.80724 1.21589 0.96082 0.96817 0.98224 0.92853 1.21661 1.02544 1.01732 0.93400 0.92350 0.89302 0.93551 0.93740 0.88877 0.89991 0.87295 0.85231 0.85710 0.87033 0.89761 0.87343 0.87403 0.88929 0.90576 0.91854 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.82 113.37 1.23 1.64 16 2 O -0.41 -10.06 9.62 -148.98 -1.43 -11.50 16 3 C 0.10 2.27 2.02 30.62 0.06 2.33 16 4 H 0.09 1.45 7.79 -2.38 -0.02 1.44 16 5 C -0.16 -3.99 5.70 30.67 0.17 -3.81 16 6 C 0.12 3.03 6.37 86.36 0.55 3.58 16 7 N -0.99 -28.53 3.29 -513.06 -1.69 -30.22 16 8 S 2.71 101.41 5.69 -56.49 -0.32 101.09 16 9 O -0.98 -38.26 15.98 -128.00 -2.05 -40.30 16 10 O -0.99 -41.14 15.98 -128.00 -2.05 -43.19 16 11 C -0.64 -28.51 5.97 22.22 0.13 -28.38 16 12 C -0.15 -6.49 9.53 22.46 0.21 -6.28 16 13 C -0.12 -5.65 10.02 22.22 0.22 -5.43 16 14 C -0.14 -7.41 8.70 22.73 0.20 -7.22 16 15 C 0.06 3.49 5.57 -21.29 -0.12 3.37 16 16 C -0.50 -26.82 9.05 23.46 0.21 -26.60 16 17 H 0.08 4.10 7.91 -2.91 -0.02 4.08 16 18 C 0.04 1.91 5.14 85.26 0.44 2.35 16 19 N -0.82 -42.11 10.97 21.83 0.24 -41.88 16 20 Si 0.98 37.66 29.59 68.60 2.03 39.69 16 21 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 22 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 23 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 24 C -0.14 -7.23 9.26 22.73 0.21 -7.02 16 25 C 0.12 2.89 5.66 86.36 0.49 3.38 16 26 C -0.11 -2.56 2.62 -10.72 -0.03 -2.58 16 27 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 28 C -0.14 -2.52 9.04 71.98 0.65 -1.87 16 29 H 0.06 0.72 8.08 -2.39 -0.02 0.70 16 30 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.05 0.70 7.85 -2.38 -0.02 0.68 16 32 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.09 1.95 7.85 -2.39 -0.02 1.93 16 34 H 0.08 2.29 7.13 -2.38 -0.02 2.27 16 35 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.13 4.93 7.60 -2.91 -0.02 4.91 16 37 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 38 H 0.11 5.97 6.18 -2.91 -0.02 5.95 16 39 H 0.29 13.47 8.30 -92.70 -0.77 12.70 16 40 H 0.11 5.27 7.60 -2.91 -0.02 5.25 16 41 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.09 2.24 7.12 -2.38 -0.02 2.23 16 43 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.06 1.18 7.65 -2.39 -0.02 1.16 16 Total: -1.00 -67.75 374.00 0.35 -67.40 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: 0.98 Total: 31.45 kcal Atomic # 6 Polarization: -77.19 SS G_CDS: 4.63 Total: -72.55 kcal Atomic # 7 Polarization: -70.65 SS G_CDS: -1.45 Total: -72.09 kcal Atomic # 8 Polarization: -89.46 SS G_CDS: -5.52 Total: -94.99 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 2.03 Total: 39.69 kcal Atomic # 16 Polarization: 101.41 SS G_CDS: -0.32 Total: 101.09 kcal Total: -67.75 0.35 -67.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590762058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.485 kcal (2) G-P(sol) polarization free energy of solvation -67.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds