Wall clock time and date at job start Sat Apr 11 2020 05:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.64307 * 2 1 4 4 C 1.54321 * 110.72357 * 236.85167 * 2 1 3 5 5 N 1.47020 * 107.27284 * 263.65798 * 4 2 1 6 6 S 1.65598 * 125.64667 * 181.02197 * 5 4 2 7 7 O 1.42105 * 106.40472 * 336.48326 * 6 5 4 8 8 O 1.42104 * 106.40285 * 203.56131 * 6 5 4 9 9 C 1.76201 * 107.22017 * 90.02196 * 6 5 4 10 10 C 1.38661 * 119.87781 * 270.02242 * 9 6 5 11 11 C 1.38611 * 120.50174 * 179.97438 * 10 9 6 12 12 C 1.37633 * 120.25254 * 0.02562 * 11 10 9 13 13 C 1.40705 * 119.74106 * 359.74702 * 12 11 10 14 14 C 1.41396 * 120.24420 * 180.27933 * 13 12 11 15 15 H 1.08004 * 119.99746 * 204.51790 * 14 13 12 16 16 C 1.39947 * 119.99824 * 24.51337 * 14 13 12 17 17 N 1.30815 * 120.00517 * 17.73763 * 16 14 13 18 18 Si 1.86808 * 119.99688 * 197.74032 * 16 14 13 19 19 H 1.48504 * 109.47141 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47144 * 120.00274 * 18 16 14 21 21 H 1.48505 * 109.46677 * 240.00279 * 18 16 14 22 22 C 1.37600 * 119.87974 * 89.99510 * 9 6 5 23 23 C 1.47414 * 108.70481 * 1.28271 * 5 4 2 24 24 C 1.55135 * 104.72295 * 335.55561 * 23 5 4 25 25 C 1.52998 * 111.19343 * 279.18986 * 24 23 5 26 26 C 1.53005 * 110.93912 * 155.28750 * 24 23 5 27 27 O 1.42897 * 109.46820 * 67.95995 * 26 24 23 28 28 H 1.09008 * 109.47030 * 181.68899 * 1 2 3 29 29 H 1.08995 * 109.47593 * 301.69483 * 1 2 3 30 30 H 1.09002 * 109.47270 * 61.69336 * 1 2 3 31 31 H 1.08996 * 109.88412 * 144.23620 * 4 2 1 32 32 H 1.09001 * 110.00804 * 23.14669 * 4 2 1 33 33 H 1.07999 * 119.74645 * 359.95384 * 10 9 6 34 34 H 1.08001 * 119.87439 * 180.02562 * 11 10 9 35 35 H 1.07995 * 120.13028 * 179.97438 * 12 11 10 36 36 H 0.96995 * 120.00754 * 179.97438 * 17 16 14 37 37 H 1.08004 * 120.11912 * 0.02562 * 22 9 6 38 38 H 1.09002 * 110.37077 * 94.48551 * 23 5 4 39 39 H 1.08998 * 110.36938 * 216.80813 * 23 5 4 40 40 H 1.08993 * 109.46886 * 172.18231 * 25 24 23 41 41 H 1.09002 * 109.47227 * 292.18863 * 25 24 23 42 42 H 1.09005 * 109.46684 * 52.18717 * 25 24 23 43 43 H 1.08999 * 109.46684 * 187.96195 * 26 24 23 44 44 H 1.08997 * 109.46625 * 307.95925 * 26 24 23 45 45 H 0.96700 * 113.99688 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7892 -1.2085 5 7 2.3756 -2.1507 -0.7414 6 16 3.0079 -3.3708 -1.6655 7 8 2.6874 -3.0598 -3.0146 8 8 2.6287 -4.5877 -1.0373 9 6 4.7620 -3.2688 -1.5346 10 6 5.4779 -2.4935 -2.4341 11 6 6.8581 -2.4036 -2.3428 12 6 7.5336 -3.0852 -1.3562 13 6 6.8171 -3.8712 -0.4349 14 6 7.4997 -4.5712 0.5865 15 1 7.0549 -5.4505 1.0287 16 6 8.7517 -4.1247 1.0244 17 7 9.1391 -2.9032 0.7618 18 14 9.8697 -5.2733 1.9838 19 1 9.2032 -6.5902 2.1479 20 1 11.1460 -5.4523 1.2461 21 1 10.1484 -4.6901 3.3208 22 6 5.4165 -3.9584 -0.5399 23 6 2.0140 -2.2517 0.6841 24 6 2.0828 -0.7948 1.2125 25 6 3.5240 -0.3870 1.5245 26 6 1.1872 -0.6155 2.4401 27 8 1.7254 -1.3595 3.5350 28 1 -0.3633 -1.0273 0.0303 29 1 -0.3634 0.5399 0.8743 30 1 -0.3634 0.4873 -0.9048 31 1 2.9851 -0.3164 -1.5799 32 1 1.3272 -0.8251 -1.9997 33 1 4.9561 -1.9558 -3.2120 34 1 7.4055 -1.7964 -3.0485 35 1 8.6089 -3.0142 -1.2871 36 1 10.0067 -2.5936 1.0656 37 1 4.8569 -4.5617 0.1597 38 1 1.0050 -2.6497 0.7924 39 1 2.7296 -2.8809 1.2134 40 1 3.5579 0.6768 1.7592 41 1 3.8868 -0.9593 2.3784 42 1 4.1541 -0.5883 0.6581 43 1 1.1421 0.4407 2.7057 44 1 0.1840 -0.9764 2.2137 45 1 1.2077 -1.2916 4.3489 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595384127.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:02 Heat of formation + Delta-G solvation = -111.585038 kcal Electronic energy + Delta-G solvation = -28687.864158 eV Core-core repulsion = 24796.575802 eV Total energy + Delta-G solvation = -3891.288356 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.80779 -37.60650 -36.65463 -36.46089 -35.27319 -33.82287 -32.77041 -31.16521 -30.05170 -29.75493 -27.61261 -25.58642 -25.44267 -25.10139 -21.90846 -21.46471 -20.95994 -18.92777 -18.71386 -17.96135 -17.42338 -16.95261 -16.02783 -15.47213 -15.37556 -15.03594 -14.89713 -14.60097 -14.35952 -13.76717 -13.57782 -13.38758 -13.24387 -13.19919 -12.62118 -12.56665 -12.38139 -12.11359 -11.90611 -11.89786 -11.81464 -11.59033 -11.53292 -11.36659 -11.35222 -10.98083 -10.96336 -10.87818 -10.74186 -10.57791 -10.49020 -10.41348 -9.98033 -9.74137 -9.58419 -9.33676 -8.68454 -8.00189 -7.67673 -6.90740 -4.50916 0.98691 2.22870 2.64960 3.01877 3.06047 3.08986 3.54521 3.85042 4.02022 4.29321 4.33117 4.43582 4.56936 4.82753 4.98719 5.02744 5.16855 5.21047 5.33943 5.42203 5.42825 5.48337 5.61979 5.72839 5.78140 5.82600 5.93820 5.99365 6.05795 6.11274 6.19607 6.20702 6.25076 6.39691 6.58784 6.61429 6.68193 6.79013 6.94446 7.06886 7.24515 7.41449 7.55768 7.75195 7.83699 7.96870 8.43060 8.69422 8.74549 10.04767 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012093 B = 0.004269 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.781794 B = 6557.984545 C = 7734.719864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 H 0.090 0.910 4 C 0.128 3.872 5 N -1.011 6.011 6 S 2.702 3.298 7 O -0.972 6.972 8 O -0.967 6.967 9 C -0.631 4.631 10 C -0.148 4.148 11 C -0.121 4.121 12 C -0.119 4.119 13 C 0.092 3.908 14 C -0.459 4.459 15 H 0.083 0.917 16 C 0.076 3.924 17 N -0.794 5.794 18 Si 0.910 3.090 19 H -0.258 1.258 20 H -0.271 1.271 21 H -0.273 1.273 22 C -0.122 4.122 23 C 0.140 3.860 24 C -0.066 4.066 25 C -0.134 4.134 26 C 0.091 3.909 27 O -0.566 6.566 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.282 0.718 37 H 0.110 0.890 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.051 0.949 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.047 0.953 44 H 0.050 0.950 45 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.502 8.440 3.331 15.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 H 0.108 0.892 4 C 0.003 3.997 5 N -0.848 5.848 6 S 2.800 3.200 7 O -0.963 6.963 8 O -0.958 6.958 9 C -0.723 4.723 10 C -0.169 4.169 11 C -0.140 4.140 12 C -0.138 4.138 13 C 0.089 3.911 14 C -0.489 4.489 15 H 0.101 0.899 16 C -0.142 4.142 17 N -0.419 5.419 18 Si 0.734 3.266 19 H -0.182 1.182 20 H -0.196 1.196 21 H -0.199 1.199 22 C -0.144 4.144 23 C 0.014 3.986 24 C -0.067 4.067 25 C -0.191 4.191 26 C 0.013 3.987 27 O -0.371 6.371 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.122 0.878 34 H 0.115 0.885 35 H 0.142 0.858 36 H 0.093 0.907 37 H 0.128 0.872 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -12.351 7.771 2.378 14.785 hybrid contribution 0.955 0.125 1.073 1.442 sum -11.396 7.896 3.452 14.287 Atomic orbital electron populations 1.21898 0.94423 1.02320 1.01884 1.22247 0.95919 0.99264 0.93661 0.89200 1.21715 1.00297 0.81514 0.96224 1.58652 1.78975 1.25502 1.21706 1.01338 0.74665 0.71818 0.72211 1.93499 1.84583 1.84488 1.33697 1.93524 1.83209 1.41949 1.77098 1.29819 1.22602 1.12373 1.07525 1.20052 0.94632 1.02497 0.99738 1.20794 0.93913 1.00477 0.98817 1.21624 1.00082 0.98734 0.93392 1.17676 0.90482 0.91145 0.91798 1.19651 1.01349 1.10981 1.16891 0.89899 1.25920 0.98121 0.94849 0.95315 1.69781 1.20072 1.15049 1.37027 0.86227 0.79802 0.81347 0.79239 1.18192 1.19615 1.19852 1.20766 0.95032 1.01122 0.97472 1.21974 1.00577 0.96418 0.79600 1.21824 0.96788 0.95432 0.92688 1.21667 0.93735 1.00615 1.03061 1.22160 0.95479 0.94602 0.86443 1.86559 1.55029 1.73142 1.22338 0.92111 0.92346 0.92108 0.91348 0.91120 0.87757 0.88462 0.85789 0.90680 0.87175 0.91679 0.89922 0.92963 0.91186 0.91578 0.93494 0.93179 0.77753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 7.87 37.16 0.29 -0.93 16 2 C -0.09 -0.94 2.96 -88.79 -0.26 -1.20 16 3 H 0.09 0.81 8.04 -51.93 -0.42 0.39 16 4 C 0.13 1.68 6.25 -3.07 -0.02 1.66 16 5 N -1.01 -16.23 3.68 -111.30 -0.41 -16.64 16 6 S 2.70 53.81 5.93 -107.50 -0.64 53.17 16 7 O -0.97 -20.54 16.85 -57.17 -0.96 -21.50 16 8 O -0.97 -21.33 16.85 -57.17 -0.96 -22.30 16 9 C -0.63 -14.23 5.97 -39.66 -0.24 -14.47 16 10 C -0.15 -3.29 9.53 -39.29 -0.37 -3.67 16 11 C -0.12 -2.75 10.02 -39.66 -0.40 -3.15 16 12 C -0.12 -2.99 8.70 -38.87 -0.34 -3.32 16 13 C 0.09 2.42 5.57 -106.82 -0.60 1.83 16 14 C -0.46 -11.94 9.05 -37.74 -0.34 -12.28 16 15 H 0.08 2.09 7.91 -52.48 -0.41 1.68 16 16 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 17 N -0.79 -19.74 10.95 55.55 0.61 -19.13 16 18 Si 0.91 18.25 29.60 -169.99 -5.03 13.22 16 19 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 20 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 21 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 22 C -0.12 -3.01 9.26 -38.88 -0.36 -3.37 16 23 C 0.14 2.05 5.49 -2.41 -0.01 2.04 16 24 C -0.07 -0.79 0.62 -152.23 -0.09 -0.88 16 25 C -0.13 -1.86 8.45 37.16 0.31 -1.54 16 26 C 0.09 0.87 4.99 37.16 0.19 1.06 16 27 O -0.57 -6.06 12.75 -35.23 -0.45 -6.51 16 28 H 0.06 0.55 7.33 -51.92 -0.38 0.16 16 29 H 0.06 0.39 7.11 -51.93 -0.37 0.02 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.86 7.85 -51.93 -0.41 0.45 16 33 H 0.10 2.10 7.60 -52.49 -0.40 1.70 16 34 H 0.10 1.94 8.06 -52.49 -0.42 1.51 16 35 H 0.12 3.17 6.16 -52.49 -0.32 2.85 16 36 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 37 H 0.11 2.63 7.60 -52.48 -0.40 2.23 16 38 H 0.07 0.87 7.56 -51.93 -0.39 0.47 16 39 H 0.08 1.37 8.06 -51.93 -0.42 0.95 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 1.08 7.57 -51.93 -0.39 0.69 16 42 H 0.07 1.06 7.91 -51.93 -0.41 0.65 16 43 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.05 0.41 6.73 -51.93 -0.35 0.06 16 45 H 0.38 2.22 9.12 45.56 0.42 2.63 16 LS Contribution 373.28 15.07 5.63 5.63 Total: -1.00 -31.67 373.28 -10.46 -42.12 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -5.91 Total: 8.42 kcal Atomic # 6 Polarization: -34.15 SS G_CDS: -2.33 Total: -36.48 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.20 Total: -35.77 kcal Atomic # 8 Polarization: -47.93 SS G_CDS: -2.38 Total: -50.31 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Atomic # 16 Polarization: 53.81 SS G_CDS: -0.64 Total: 53.17 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.67 -10.46 -42.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595384127.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.460 kcal (2) G-P(sol) polarization free energy of solvation -31.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds