Wall clock time and date at job start Sat Apr 11 2020 05:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.64307 * 2 1 4 4 C 1.54321 * 110.72357 * 236.85167 * 2 1 3 5 5 N 1.47020 * 107.27284 * 263.65798 * 4 2 1 6 6 S 1.65598 * 125.64667 * 181.02197 * 5 4 2 7 7 O 1.42105 * 106.40472 * 336.48326 * 6 5 4 8 8 O 1.42104 * 106.40285 * 203.56131 * 6 5 4 9 9 C 1.76201 * 107.22017 * 90.02196 * 6 5 4 10 10 C 1.38661 * 119.87781 * 270.02242 * 9 6 5 11 11 C 1.38611 * 120.50174 * 179.97438 * 10 9 6 12 12 C 1.37633 * 120.25254 * 0.02562 * 11 10 9 13 13 C 1.40705 * 119.74106 * 359.74702 * 12 11 10 14 14 C 1.41396 * 120.24420 * 180.27933 * 13 12 11 15 15 H 1.08004 * 119.99746 * 204.51790 * 14 13 12 16 16 C 1.39947 * 119.99824 * 24.51337 * 14 13 12 17 17 N 1.30815 * 120.00517 * 17.73763 * 16 14 13 18 18 Si 1.86808 * 119.99688 * 197.74032 * 16 14 13 19 19 H 1.48504 * 109.47141 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47144 * 120.00274 * 18 16 14 21 21 H 1.48505 * 109.46677 * 240.00279 * 18 16 14 22 22 C 1.37600 * 119.87974 * 89.99510 * 9 6 5 23 23 C 1.47414 * 108.70481 * 1.28271 * 5 4 2 24 24 C 1.55135 * 104.72295 * 335.55561 * 23 5 4 25 25 C 1.52998 * 111.19343 * 279.18986 * 24 23 5 26 26 C 1.53005 * 110.93912 * 155.28750 * 24 23 5 27 27 O 1.42897 * 109.46820 * 67.95995 * 26 24 23 28 28 H 1.09008 * 109.47030 * 181.68899 * 1 2 3 29 29 H 1.08995 * 109.47593 * 301.69483 * 1 2 3 30 30 H 1.09002 * 109.47270 * 61.69336 * 1 2 3 31 31 H 1.08996 * 109.88412 * 144.23620 * 4 2 1 32 32 H 1.09001 * 110.00804 * 23.14669 * 4 2 1 33 33 H 1.07999 * 119.74645 * 359.95384 * 10 9 6 34 34 H 1.08001 * 119.87439 * 180.02562 * 11 10 9 35 35 H 1.07995 * 120.13028 * 179.97438 * 12 11 10 36 36 H 0.96995 * 120.00754 * 179.97438 * 17 16 14 37 37 H 1.08004 * 120.11912 * 0.02562 * 22 9 6 38 38 H 1.09002 * 110.37077 * 94.48551 * 23 5 4 39 39 H 1.08998 * 110.36938 * 216.80813 * 23 5 4 40 40 H 1.08993 * 109.46886 * 172.18231 * 25 24 23 41 41 H 1.09002 * 109.47227 * 292.18863 * 25 24 23 42 42 H 1.09005 * 109.46684 * 52.18717 * 25 24 23 43 43 H 1.08999 * 109.46684 * 187.96195 * 26 24 23 44 44 H 1.08997 * 109.46625 * 307.95925 * 26 24 23 45 45 H 0.96700 * 113.99688 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7892 -1.2085 5 7 2.3756 -2.1507 -0.7414 6 16 3.0079 -3.3708 -1.6655 7 8 2.6874 -3.0598 -3.0146 8 8 2.6287 -4.5877 -1.0373 9 6 4.7620 -3.2688 -1.5346 10 6 5.4779 -2.4935 -2.4341 11 6 6.8581 -2.4036 -2.3428 12 6 7.5336 -3.0852 -1.3562 13 6 6.8171 -3.8712 -0.4349 14 6 7.4997 -4.5712 0.5865 15 1 7.0549 -5.4505 1.0287 16 6 8.7517 -4.1247 1.0244 17 7 9.1391 -2.9032 0.7618 18 14 9.8697 -5.2733 1.9838 19 1 9.2032 -6.5902 2.1479 20 1 11.1460 -5.4523 1.2461 21 1 10.1484 -4.6901 3.3208 22 6 5.4165 -3.9584 -0.5399 23 6 2.0140 -2.2517 0.6841 24 6 2.0828 -0.7948 1.2125 25 6 3.5240 -0.3870 1.5245 26 6 1.1872 -0.6155 2.4401 27 8 1.7254 -1.3595 3.5350 28 1 -0.3633 -1.0273 0.0303 29 1 -0.3634 0.5399 0.8743 30 1 -0.3634 0.4873 -0.9048 31 1 2.9851 -0.3164 -1.5799 32 1 1.3272 -0.8251 -1.9997 33 1 4.9561 -1.9558 -3.2120 34 1 7.4055 -1.7964 -3.0485 35 1 8.6089 -3.0142 -1.2871 36 1 10.0067 -2.5936 1.0656 37 1 4.8569 -4.5617 0.1597 38 1 1.0050 -2.6497 0.7924 39 1 2.7296 -2.8809 1.2134 40 1 3.5579 0.6768 1.7592 41 1 3.8868 -0.9593 2.3784 42 1 4.1541 -0.5883 0.6581 43 1 1.1421 0.4407 2.7057 44 1 0.1840 -0.9764 2.2137 45 1 1.2077 -1.2916 4.3489 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595384127.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:01 Heat of formation + Delta-G solvation = -134.212958 kcal Electronic energy + Delta-G solvation = -28688.845379 eV Core-core repulsion = 24796.575802 eV Total energy + Delta-G solvation = -3892.269576 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.79390 -39.47729 -38.34275 -37.29866 -36.97876 -35.69904 -33.85456 -32.07675 -31.94577 -31.61290 -28.62510 -27.37732 -26.43201 -26.16710 -23.68650 -22.83988 -22.50697 -20.36204 -19.87739 -19.55253 -18.59514 -18.10880 -17.82578 -17.05570 -16.82557 -16.53135 -16.21438 -15.95390 -15.41069 -15.25026 -15.08578 -14.71133 -14.45219 -14.33784 -14.16797 -13.73809 -13.50100 -13.46844 -13.38224 -13.27119 -13.16267 -13.11167 -13.07191 -13.05395 -12.84467 -12.75687 -12.64049 -12.23726 -12.01829 -11.60783 -11.58512 -11.43019 -11.37218 -11.31553 -11.17266 -10.70754 -10.03688 -9.82315 -9.59223 -8.75804 -6.48083 -0.61247 0.37093 0.80937 1.35287 1.42345 1.50571 2.03858 2.16163 2.53124 2.72449 3.10578 3.27979 3.48333 3.58689 3.70257 4.01152 4.17389 4.25561 4.28054 4.35509 4.39441 4.49359 4.61144 4.63795 4.66398 4.76738 4.79810 4.86520 4.91355 4.91650 4.99817 5.02908 5.06872 5.12990 5.17185 5.19132 5.25390 5.37041 5.46118 5.49258 5.53618 5.54930 5.84907 5.90470 6.07425 6.49269 6.76467 6.81659 7.05481 8.22466 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012093 B = 0.004269 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.781794 B = 6557.984545 C = 7734.719864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.078 4.078 3 H 0.111 0.889 4 C 0.113 3.887 5 N -1.007 6.007 6 S 2.726 3.274 7 O -0.980 6.980 8 O -0.992 6.992 9 C -0.639 4.639 10 C -0.149 4.149 11 C -0.121 4.121 12 C -0.140 4.140 13 C 0.065 3.935 14 C -0.498 4.498 15 H 0.075 0.925 16 C 0.040 3.960 17 N -0.819 5.819 18 Si 0.982 3.018 19 H -0.261 1.261 20 H -0.260 1.260 21 H -0.262 1.262 22 C -0.146 4.146 23 C 0.130 3.870 24 C -0.063 4.063 25 C -0.130 4.130 26 C 0.093 3.907 27 O -0.594 6.594 28 H 0.052 0.948 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.115 0.885 36 H 0.293 0.707 37 H 0.102 0.898 38 H 0.082 0.918 39 H 0.052 0.948 40 H 0.075 0.925 41 H 0.044 0.956 42 H 0.035 0.965 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.977 10.381 3.639 17.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.098 4.098 3 H 0.130 0.870 4 C -0.012 4.012 5 N -0.846 5.846 6 S 2.822 3.178 7 O -0.971 6.971 8 O -0.983 6.983 9 C -0.728 4.728 10 C -0.169 4.169 11 C -0.140 4.140 12 C -0.159 4.159 13 C 0.062 3.938 14 C -0.527 4.527 15 H 0.094 0.906 16 C -0.176 4.176 17 N -0.445 5.445 18 Si 0.802 3.198 19 H -0.185 1.185 20 H -0.184 1.184 21 H -0.187 1.187 22 C -0.167 4.167 23 C 0.006 3.994 24 C -0.065 4.065 25 C -0.188 4.188 26 C 0.015 3.985 27 O -0.403 6.403 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.133 0.867 36 H 0.103 0.897 37 H 0.120 0.880 38 H 0.101 0.899 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -13.808 9.722 2.682 17.099 hybrid contribution 1.326 -0.390 0.954 1.680 sum -12.482 9.332 3.636 16.003 Atomic orbital electron populations 1.21919 0.92281 1.02439 1.03705 1.22265 0.97529 0.99294 0.90741 0.87050 1.22122 1.00894 0.79982 0.98184 1.58355 1.77814 1.26218 1.22255 1.00535 0.73346 0.71905 0.72050 1.93476 1.84169 1.84824 1.34613 1.93485 1.83028 1.44160 1.77592 1.30323 1.24921 1.11093 1.06435 1.20428 0.94661 1.01989 0.99850 1.21139 0.94482 0.99889 0.98471 1.21631 0.99786 1.00027 0.94494 1.18023 0.91384 0.91893 0.92497 1.19866 1.03159 1.11567 1.18124 0.90638 1.26722 0.98715 0.96197 0.95958 1.69805 1.20867 1.16268 1.37555 0.85158 0.77689 0.78808 0.78114 1.18475 1.18428 1.18700 1.20781 0.94807 1.02392 0.98698 1.22195 1.00437 0.98348 0.78466 1.21845 0.96236 0.93547 0.94890 1.21607 0.94801 1.01698 1.00649 1.22212 0.95269 0.96025 0.84952 1.86519 1.56347 1.73680 1.23735 0.92887 0.89991 0.90872 0.91595 0.89759 0.85196 0.85363 0.86726 0.89656 0.87965 0.89941 0.92981 0.90624 0.93699 0.94552 0.90975 0.91185 0.75437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 7.87 71.98 0.57 -1.23 16 2 C -0.08 -1.37 2.96 -9.61 -0.03 -1.40 16 3 H 0.11 1.54 8.04 -2.39 -0.02 1.52 16 4 C 0.11 2.74 6.25 86.73 0.54 3.28 16 5 N -1.01 -31.97 3.68 -506.04 -1.86 -33.83 16 6 S 2.73 109.70 5.93 -56.49 -0.34 109.37 16 7 O -0.98 -40.67 16.85 -128.00 -2.16 -42.83 16 8 O -0.99 -44.96 16.85 -128.00 -2.16 -47.12 16 9 C -0.64 -29.62 5.97 22.22 0.13 -29.49 16 10 C -0.15 -6.60 9.53 22.46 0.21 -6.39 16 11 C -0.12 -5.54 10.02 22.22 0.22 -5.32 16 12 C -0.14 -7.29 8.70 22.73 0.20 -7.09 16 13 C 0.07 3.60 5.57 -21.29 -0.12 3.48 16 14 C -0.50 -27.30 9.05 23.46 0.21 -27.08 16 15 H 0.08 4.07 7.91 -2.91 -0.02 4.05 16 16 C 0.04 1.99 5.14 85.26 0.44 2.43 16 17 N -0.82 -41.74 10.95 21.83 0.24 -41.50 16 18 Si 0.98 37.99 29.60 68.60 2.03 40.02 16 19 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 20 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 21 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 22 C -0.15 -7.58 9.26 22.73 0.21 -7.37 16 23 C 0.13 3.81 5.49 86.94 0.48 4.29 16 24 C -0.06 -1.42 0.62 -50.71 -0.03 -1.45 16 25 C -0.13 -3.61 8.45 71.98 0.61 -3.00 16 26 C 0.09 1.50 4.99 71.98 0.36 1.86 16 27 O -0.59 -11.89 12.75 -148.98 -1.90 -13.79 16 28 H 0.05 0.76 7.33 -2.38 -0.02 0.74 16 29 H 0.08 0.66 7.11 -2.39 -0.02 0.65 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 1.84 7.85 -2.39 -0.02 1.82 16 33 H 0.13 5.05 7.60 -2.91 -0.02 5.03 16 34 H 0.13 4.96 8.06 -2.91 -0.02 4.94 16 35 H 0.11 6.10 6.16 -2.91 -0.02 6.08 16 36 H 0.29 13.29 8.30 -92.71 -0.77 12.53 16 37 H 0.10 5.30 7.60 -2.91 -0.02 5.28 16 38 H 0.08 2.11 7.56 -2.39 -0.02 2.09 16 39 H 0.05 1.82 8.06 -2.39 -0.02 1.80 16 40 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.04 1.44 7.57 -2.39 -0.02 1.42 16 42 H 0.04 1.19 7.91 -2.38 -0.02 1.17 16 43 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.07 0.87 6.73 -2.39 -0.02 0.86 16 45 H 0.40 3.93 9.12 -74.06 -0.68 3.25 16 Total: -1.00 -71.47 373.28 -1.81 -73.28 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: 0.33 Total: 30.89 kcal Atomic # 6 Polarization: -78.49 SS G_CDS: 4.00 Total: -74.49 kcal Atomic # 7 Polarization: -73.71 SS G_CDS: -1.62 Total: -75.34 kcal Atomic # 8 Polarization: -97.52 SS G_CDS: -6.21 Total: -103.74 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.02 kcal Atomic # 16 Polarization: 109.70 SS G_CDS: -0.34 Total: 109.37 kcal Total: -71.47 -1.81 -73.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595384127.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.929 kcal (2) G-P(sol) polarization free energy of solvation -71.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds