Wall clock time and date at job start Sat Apr 11 2020 05:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46464 * 2 1 4 4 C 1.53048 * 109.44700 * 119.96423 * 2 1 3 5 5 C 1.53619 * 109.24381 * 58.52037 * 4 2 1 6 6 N 1.46926 * 108.54225 * 54.85757 * 5 4 2 7 7 S 1.65596 * 120.63197 * 126.36948 * 6 5 4 8 8 O 1.42103 * 106.40256 * 156.17902 * 7 6 5 9 9 O 1.42095 * 106.40185 * 23.25960 * 7 6 5 10 10 C 1.76197 * 107.21882 * 269.71862 * 7 6 5 11 11 C 1.38655 * 119.87580 * 89.99576 * 10 7 6 12 12 C 1.38615 * 120.50458 * 179.97438 * 11 10 7 13 13 C 1.37637 * 120.24781 * 0.02562 * 12 11 10 14 14 C 1.40700 * 119.74210 * 0.02562 * 13 12 11 15 15 C 1.41400 * 120.24349 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99793 * 204.76551 * 15 14 13 17 17 C 1.39939 * 120.00146 * 24.76109 * 15 14 13 18 18 N 1.30827 * 119.99765 * 17.71632 * 17 15 14 19 19 Si 1.86800 * 120.00291 * 197.71733 * 17 15 14 20 20 H 1.48500 * 109.46956 * 179.97438 * 19 17 15 21 21 H 1.48498 * 109.47127 * 299.99966 * 19 17 15 22 22 H 1.48497 * 109.47206 * 60.00033 * 19 17 15 23 23 C 1.37605 * 119.87880 * 270.30588 * 10 7 6 24 24 C 1.46928 * 118.73824 * 306.09022 * 6 5 4 25 25 C 1.53034 * 109.45868 * 240.02176 * 2 1 3 26 26 H 1.09000 * 109.49783 * 181.41144 * 25 2 1 27 27 C 1.53005 * 109.52571 * 61.32786 * 25 2 1 28 28 O 1.42898 * 109.47117 * 175.14694 * 27 25 2 29 29 H 1.08992 * 109.47185 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46972 * 299.97761 * 1 2 3 31 31 H 1.09000 * 109.47120 * 59.97408 * 1 2 3 32 32 H 1.08992 * 109.49273 * 178.59926 * 4 2 1 33 33 H 1.09003 * 109.49550 * 298.66372 * 4 2 1 34 34 H 1.09006 * 109.74191 * 295.12066 * 5 4 2 35 35 H 1.08994 * 109.66659 * 174.55049 * 5 4 2 36 36 H 1.08008 * 119.74948 * 0.02562 * 11 10 7 37 37 H 1.08000 * 119.87908 * 180.02562 * 12 11 10 38 38 H 1.07994 * 120.13179 * 179.97438 * 13 12 11 39 39 H 0.97001 * 120.00305 * 179.97438 * 18 17 15 40 40 H 1.07999 * 120.12647 * 359.97438 * 23 10 7 41 41 H 1.09002 * 109.58869 * 173.64354 * 24 6 5 42 42 H 1.08996 * 109.59171 * 294.07528 * 24 6 5 43 43 H 1.08999 * 109.46597 * 295.14478 * 27 25 2 44 44 H 1.08998 * 109.46759 * 55.14461 * 27 25 2 45 45 H 0.96700 * 113.99471 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7208 1.2503 5 6 1.4940 -2.1568 1.2645 6 7 1.8619 -2.8090 0.0004 7 16 2.6640 -4.2577 0.0006 8 8 2.3819 -4.8727 -1.2490 9 8 2.3821 -4.8722 1.2505 10 6 4.3890 -3.8989 0.0004 11 6 5.0653 -3.7579 1.2026 12 6 6.4224 -3.4762 1.2177 13 6 7.1139 -3.3327 0.0363 14 6 6.4377 -3.4725 -1.1897 15 6 7.1378 -3.3278 -2.4097 16 1 6.6081 -3.0372 -3.3050 17 6 8.5168 -3.5609 -2.4570 18 7 9.0999 -4.2331 -1.4980 19 14 9.5251 -2.9123 -3.8895 20 1 10.9492 -3.2900 -3.7035 21 1 9.0186 -3.4980 -5.1567 22 1 9.4093 -1.4330 -3.9468 23 6 5.0587 -3.7533 -1.1928 24 6 1.4992 -2.1543 -1.2640 25 6 2.0398 -0.7210 -1.2499 26 1 3.1296 -0.7433 -1.2380 27 6 1.5578 0.0189 -2.4994 28 8 2.1265 -0.5880 -3.6614 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5135 0.8903 31 1 -0.3633 0.5142 -0.8898 32 1 3.1292 -0.7430 1.2386 33 1 1.6960 -0.1930 2.1399 34 1 0.4086 -2.1373 1.3633 35 1 1.9291 -2.7062 2.0993 36 1 4.5307 -3.8693 2.1345 37 1 6.9392 -3.3689 2.1599 38 1 8.1711 -3.1127 0.0502 39 1 10.0557 -4.3951 -1.5309 40 1 4.5291 -3.8590 -2.1281 41 1 1.9378 -2.7021 -2.0981 42 1 0.4143 -2.1346 -1.3672 43 1 0.4707 -0.0348 -2.5566 44 1 1.8678 1.0625 -2.4459 45 1 1.8638 -0.1690 -4.4924 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598626321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:35 Heat of formation + Delta-G solvation = -116.086448 kcal Electronic energy + Delta-G solvation = -28863.516053 eV Core-core repulsion = 24972.032501 eV Total energy + Delta-G solvation = -3891.483552 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.50465 -37.58072 -36.72041 -36.46522 -35.25102 -33.79520 -33.49351 -31.49552 -30.02453 -29.73473 -27.71931 -25.77079 -25.42568 -23.98059 -21.98241 -21.77074 -20.92775 -19.21964 -18.25952 -17.84238 -17.32621 -17.04987 -15.96532 -15.90008 -15.25342 -15.11242 -14.78049 -14.65968 -14.33668 -14.11201 -13.98703 -13.56261 -13.39856 -13.27970 -12.74640 -12.54243 -12.16980 -12.13070 -11.87185 -11.80903 -11.53164 -11.38990 -11.34989 -11.31286 -11.21897 -11.08857 -11.02282 -10.94494 -10.80918 -10.58479 -10.46738 -10.25470 -9.94417 -9.72184 -9.53474 -9.30161 -8.66472 -7.97439 -7.64967 -6.87785 -4.48269 1.02928 2.25620 2.68597 3.01989 3.04678 3.11224 3.50399 3.86591 4.14042 4.31622 4.46564 4.62584 4.73645 4.87495 4.92135 5.05723 5.16007 5.24293 5.34077 5.43047 5.44959 5.48955 5.54030 5.56894 5.69145 5.79328 5.85343 5.90521 6.03289 6.08387 6.19926 6.21984 6.22610 6.36407 6.46443 6.71097 6.74341 6.81604 6.98730 7.09733 7.27229 7.44045 7.63945 7.76936 7.85853 7.99304 8.45198 8.71881 8.77068 10.08034 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011895 B = 0.004481 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.335593 B = 6246.586946 C = 7387.199560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.080 4.080 3 H 0.071 0.929 4 C -0.130 4.130 5 C 0.122 3.878 6 N -1.000 6.000 7 S 2.685 3.315 8 O -0.968 6.968 9 O -0.975 6.975 10 C -0.630 4.630 11 C -0.148 4.148 12 C -0.121 4.121 13 C -0.119 4.119 14 C 0.093 3.907 15 C -0.460 4.460 16 H 0.082 0.918 17 C 0.075 3.925 18 N -0.795 5.795 19 Si 0.912 3.088 20 H -0.278 1.278 21 H -0.263 1.263 22 H -0.263 1.263 23 C -0.121 4.121 24 C 0.133 3.867 25 C -0.101 4.101 26 H 0.091 0.909 27 C 0.082 3.918 28 O -0.566 6.566 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.124 0.876 39 H 0.283 0.717 40 H 0.111 0.889 41 H 0.098 0.902 42 H 0.067 0.933 43 H 0.047 0.953 44 H 0.045 0.955 45 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.829 10.899 1.557 16.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.099 4.099 3 H 0.090 0.910 4 C -0.169 4.169 5 C -0.004 4.004 6 N -0.836 5.836 7 S 2.783 3.217 8 O -0.959 6.959 9 O -0.965 6.965 10 C -0.722 4.722 11 C -0.169 4.169 12 C -0.141 4.141 13 C -0.139 4.139 14 C 0.089 3.911 15 C -0.489 4.489 16 H 0.100 0.900 17 C -0.143 4.143 18 N -0.420 5.420 19 Si 0.736 3.264 20 H -0.203 1.203 21 H -0.188 1.188 22 H -0.188 1.188 23 C -0.142 4.142 24 C 0.008 3.992 25 C -0.121 4.121 26 H 0.109 0.891 27 C 0.004 3.996 28 O -0.371 6.371 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.141 0.859 39 H 0.094 0.906 40 H 0.129 0.871 41 H 0.116 0.884 42 H 0.085 0.915 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -12.775 9.549 2.086 16.085 hybrid contribution 1.074 1.093 -0.979 1.818 sum -11.701 10.642 1.107 15.855 Atomic orbital electron populations 1.22034 0.95401 1.02424 1.01458 1.20981 0.95693 0.98995 0.94198 0.91023 1.22015 1.02012 0.95529 0.97357 1.21483 1.00164 0.93448 0.85289 1.57823 1.72797 1.41501 1.11457 1.01852 0.74535 0.72421 0.72934 1.93523 1.85041 1.73218 1.44093 1.93493 1.85231 1.73408 1.44379 1.29811 1.22335 1.19882 1.00190 1.20042 0.95149 1.07479 0.94263 1.20790 0.93989 1.01967 0.97315 1.21611 1.00143 1.00642 0.91495 1.17666 0.90799 0.89077 0.93526 1.19581 0.92467 1.40958 0.95896 0.89954 1.25927 0.98451 0.92465 0.97432 1.69782 1.12536 1.27553 1.32141 0.86304 0.78223 0.80443 0.81457 1.20287 1.18795 1.18752 1.20749 0.96046 1.03198 0.94250 1.21368 0.99824 0.92826 0.85195 1.21548 1.02623 0.95244 0.92718 0.89105 1.22218 0.96333 0.95461 0.85598 1.86592 1.74172 1.60126 1.16235 0.91771 0.92662 0.92754 0.90619 0.90869 0.91221 0.89198 0.87816 0.88511 0.85872 0.90568 0.87132 0.88405 0.91503 0.93515 0.93655 0.77714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 8.11 37.16 0.30 -0.99 16 2 C -0.08 -0.80 2.71 -90.58 -0.25 -1.05 16 3 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.13 -1.42 5.64 -26.39 -0.15 -1.57 16 5 C 0.12 1.53 5.94 -3.49 -0.02 1.51 16 6 N -1.00 -15.42 3.28 -113.27 -0.37 -15.80 16 7 S 2.69 53.21 5.69 -107.50 -0.61 52.60 16 8 O -0.97 -21.49 15.99 -57.17 -0.91 -22.40 16 9 O -0.97 -20.50 15.97 -57.17 -0.91 -21.42 16 10 C -0.63 -14.20 5.96 -39.66 -0.24 -14.44 16 11 C -0.15 -3.28 9.53 -39.29 -0.37 -3.65 16 12 C -0.12 -2.76 10.02 -39.66 -0.40 -3.16 16 13 C -0.12 -3.01 8.69 -38.87 -0.34 -3.35 16 14 C 0.09 2.44 5.57 -106.82 -0.60 1.85 16 15 C -0.46 -12.03 9.05 -37.74 -0.34 -12.37 16 16 H 0.08 2.08 7.91 -52.48 -0.41 1.66 16 17 C 0.08 1.86 5.14 -17.34 -0.09 1.77 16 18 N -0.79 -20.17 10.97 55.55 0.61 -19.56 16 19 Si 0.91 18.39 29.59 -169.99 -5.03 13.35 16 20 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 22 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 23 C -0.12 -3.00 9.26 -38.87 -0.36 -3.36 16 24 C 0.13 1.89 5.03 -3.71 -0.02 1.87 16 25 C -0.10 -1.26 2.35 -90.50 -0.21 -1.48 16 26 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 27 C 0.08 0.85 5.97 37.16 0.22 1.07 16 28 O -0.57 -6.90 13.30 -35.23 -0.47 -7.37 16 29 H 0.06 0.57 4.96 -51.93 -0.26 0.32 16 30 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 31 H 0.05 0.40 6.58 -51.93 -0.34 0.06 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.73 6.69 -51.93 -0.35 0.39 16 35 H 0.09 1.18 7.12 -51.93 -0.37 0.81 16 36 H 0.10 2.07 7.60 -52.48 -0.40 1.67 16 37 H 0.10 1.93 8.06 -52.49 -0.42 1.50 16 38 H 0.12 3.16 6.18 -52.49 -0.32 2.84 16 39 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 40 H 0.11 2.68 7.61 -52.49 -0.40 2.28 16 41 H 0.10 1.61 6.97 -51.93 -0.36 1.25 16 42 H 0.07 0.80 6.69 -51.93 -0.35 0.46 16 43 H 0.05 0.40 6.73 -51.93 -0.35 0.05 16 44 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.38 2.72 9.12 45.56 0.42 3.13 16 LS Contribution 364.45 15.07 5.49 5.49 Total: -1.00 -32.04 364.45 -10.65 -42.70 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -5.59 Total: 9.76 kcal Atomic # 6 Polarization: -34.51 SS G_CDS: -2.86 Total: -37.36 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.24 Total: -35.36 kcal Atomic # 8 Polarization: -48.89 SS G_CDS: -2.30 Total: -51.18 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.35 kcal Atomic # 16 Polarization: 53.21 SS G_CDS: -0.61 Total: 52.60 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.04 -10.65 -42.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598626321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.390 kcal (2) G-P(sol) polarization free energy of solvation -32.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds