Wall clock time and date at job start Sat Apr 11 2020 05:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47240 * 2 1 4 4 H 1.08995 * 109.68063 * 55.04820 * 3 2 1 5 5 C 1.53296 * 109.68353 * 294.52919 * 3 2 1 6 6 O 1.42956 * 109.22632 * 187.97391 * 5 3 2 7 7 C 1.42960 * 114.16535 * 62.58144 * 6 5 3 8 8 H 1.08999 * 109.51441 * 57.39892 * 7 6 5 9 9 C 1.53001 * 109.51554 * 177.49939 * 7 6 5 10 10 C 1.53296 * 109.22487 * 297.42026 * 7 6 5 11 11 N 1.47151 * 109.67990 * 175.60754 * 3 2 1 12 12 S 1.65602 * 120.98428 * 350.27579 * 11 3 2 13 13 O 1.42104 * 106.39892 * 35.82270 * 12 11 3 14 14 O 1.42100 * 106.40167 * 168.73617 * 12 11 3 15 15 C 1.76198 * 107.21833 * 282.28147 * 12 11 3 16 16 C 1.37642 * 120.12608 * 115.67556 * 15 12 11 17 17 C 1.38610 * 120.24543 * 179.72456 * 16 15 12 18 18 C 1.38654 * 120.50300 * 0.54171 * 17 16 15 19 19 C 1.37600 * 120.24857 * 359.73633 * 18 17 16 20 20 C 1.40696 * 120.12676 * 295.94216 * 15 12 11 21 21 C 1.41396 * 120.24512 * 359.97438 * 20 15 12 22 22 H 1.08002 * 119.99821 * 325.15291 * 21 20 15 23 23 C 1.39936 * 119.99938 * 145.15904 * 21 20 15 24 24 N 1.30824 * 120.00148 * 168.03769 * 23 21 20 25 25 Si 1.86799 * 120.00187 * 348.03223 * 23 21 20 26 26 H 1.48502 * 109.46933 * 86.81019 * 25 23 21 27 27 H 1.48500 * 109.47319 * 206.80627 * 25 23 21 28 28 H 1.48500 * 109.47400 * 326.81266 * 25 23 21 29 29 H 1.09001 * 109.47271 * 185.45634 * 1 2 3 30 30 H 1.08995 * 109.46560 * 305.45737 * 1 2 3 31 31 H 1.08998 * 109.47063 * 65.45085 * 1 2 3 32 32 H 1.09009 * 109.46806 * 240.00017 * 2 1 3 33 33 H 1.09001 * 109.47042 * 120.00669 * 2 1 3 34 34 H 1.09004 * 109.51064 * 68.04989 * 5 3 2 35 35 H 1.08999 * 109.51653 * 307.90507 * 5 3 2 36 36 H 1.09004 * 109.46995 * 59.99706 * 9 7 6 37 37 H 1.08998 * 109.47459 * 180.02562 * 9 7 6 38 38 H 1.09002 * 109.46859 * 300.00448 * 9 7 6 39 39 H 1.08999 * 109.68464 * 172.02305 * 10 7 6 40 40 H 1.08997 * 109.68391 * 292.57868 * 10 7 6 41 41 H 1.08004 * 119.87325 * 359.96608 * 16 15 12 42 42 H 1.08006 * 119.74898 * 180.25410 * 17 16 15 43 43 H 1.08002 * 119.88011 * 179.74891 * 18 17 16 44 44 H 1.07999 * 120.12974 * 180.02562 * 19 18 17 45 45 H 0.97004 * 120.00412 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6081 1.9845 0.8412 5 6 1.6472 2.1290 -1.3131 6 8 2.2830 3.4074 -1.3845 7 6 3.7113 3.3504 -1.4045 8 1 4.0397 2.7420 -2.2472 9 6 4.2774 4.7649 -1.5443 10 6 4.2100 2.7264 -0.0961 11 7 3.5077 1.4491 0.1061 12 16 4.3445 0.0603 0.4428 13 8 3.6538 -0.9935 -0.2143 14 8 5.7160 0.3525 0.2131 15 6 4.1824 -0.2403 2.1714 16 6 3.5211 -1.3616 2.6185 17 6 3.3971 -1.6034 3.9777 18 6 3.9264 -0.7154 4.9018 19 6 4.5865 0.4149 4.4775 20 6 4.7234 0.6678 3.0998 21 6 5.4004 1.8257 2.6521 22 1 5.9922 1.7900 1.7494 23 6 5.3036 3.0177 3.3788 24 7 6.1038 4.0163 3.1069 25 14 4.0318 3.1830 4.7369 26 1 4.5960 2.6647 6.0091 27 1 3.6682 4.6132 4.9032 28 1 2.8204 2.4026 4.3784 29 1 -0.3634 -1.0230 0.0977 30 1 -0.3632 0.5961 0.8371 31 1 -0.3633 0.4270 -0.9348 32 1 1.8934 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 0.5654 2.2580 -1.3470 35 1 1.9679 1.5154 -2.1550 36 1 3.9502 5.3723 -0.7003 37 1 5.3664 4.7206 -1.5599 38 1 3.9188 5.2097 -2.4726 39 1 5.2836 2.5490 -0.1597 40 1 3.9971 3.3981 0.7355 41 1 3.1007 -2.0575 1.9076 42 1 2.8801 -2.4879 4.3197 43 1 3.8204 -0.9117 5.9585 44 1 4.9984 1.1051 5.1989 45 1 6.0365 4.8428 3.6103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601304119.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:46 Heat of formation + Delta-G solvation = -113.362772 kcal Electronic energy + Delta-G solvation = -30258.085399 eV Core-core repulsion = 26366.719955 eV Total energy + Delta-G solvation = -3891.365444 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.59190 -39.63211 -38.50075 -36.83987 -36.47010 -35.64196 -34.71334 -32.52929 -32.34880 -31.84989 -28.50736 -27.32714 -26.87840 -24.82135 -23.74742 -22.98371 -22.48819 -21.95567 -19.85831 -19.54848 -18.56799 -17.90484 -17.77378 -17.21143 -17.07489 -16.37754 -15.97821 -15.84555 -15.72481 -15.64235 -15.32110 -15.11335 -14.69157 -14.57368 -14.09552 -14.03090 -13.68840 -13.55540 -13.31351 -13.19068 -13.08318 -13.06455 -12.93567 -12.79792 -12.73308 -12.55000 -12.25577 -12.15536 -12.11392 -11.94556 -11.75697 -11.54041 -11.33034 -11.21359 -11.03053 -10.89296 -10.02761 -9.64115 -9.59069 -8.97073 -6.73867 -0.30051 0.30652 0.73869 1.20681 1.31775 1.40275 2.01907 2.08539 2.48833 2.77778 2.89127 3.26253 3.53050 3.65151 3.77060 3.97971 4.08911 4.10543 4.16970 4.28169 4.29325 4.39419 4.48900 4.51049 4.58217 4.66361 4.69623 4.80369 4.83782 4.86208 4.89817 4.95143 5.05368 5.17511 5.20496 5.23863 5.30078 5.33712 5.34343 5.46389 5.53715 5.66534 5.75509 5.79969 6.06330 6.20035 6.28219 6.50947 6.68494 8.06560 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010296 B = 0.007507 C = 0.005637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.738246 B = 3728.998771 C = 4965.767895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.156 4.156 3 C 0.118 3.882 4 H 0.074 0.926 5 C 0.058 3.942 6 O -0.384 6.384 7 C 0.077 3.923 8 H 0.066 0.934 9 C -0.138 4.138 10 C 0.106 3.894 11 N -0.990 5.990 12 S 2.712 3.288 13 O -0.987 6.987 14 O -1.006 7.006 15 C -0.780 4.780 16 C 0.002 3.998 17 C -0.244 4.244 18 C -0.042 4.042 19 C -0.261 4.261 20 C 0.149 3.851 21 C -0.487 4.487 22 H 0.096 0.904 23 C 0.067 3.933 24 N -0.812 5.812 25 Si 0.947 3.053 26 H -0.254 1.254 27 H -0.273 1.273 28 H -0.256 1.256 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.057 0.943 34 H 0.134 0.866 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.133 0.867 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.110 0.890 45 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.682 -0.715 -4.366 11.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.194 4.194 3 C 0.013 3.987 4 H 0.092 0.908 5 C -0.020 4.020 6 O -0.303 6.303 7 C 0.018 3.982 8 H 0.084 0.916 9 C -0.196 4.196 10 C -0.020 4.020 11 N -0.828 5.828 12 S 2.812 3.188 13 O -0.977 6.977 14 O -0.997 6.997 15 C -0.874 4.874 16 C -0.017 4.017 17 C -0.264 4.264 18 C -0.060 4.060 19 C -0.280 4.280 20 C 0.145 3.855 21 C -0.515 4.515 22 H 0.114 0.886 23 C -0.152 4.152 24 N -0.436 5.436 25 Si 0.771 3.229 26 H -0.180 1.180 27 H -0.199 1.199 28 H -0.180 1.180 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.076 0.924 34 H 0.152 0.848 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.150 0.850 42 H 0.158 0.842 43 H 0.156 0.844 44 H 0.128 0.872 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.151 -0.758 -5.014 11.347 hybrid contribution 0.279 0.133 1.661 1.690 sum -9.872 -0.625 -3.353 10.445 Atomic orbital electron populations 1.21755 0.92272 1.02984 1.03009 1.22413 0.99089 0.93231 1.04695 1.21941 0.78161 0.98571 1.00058 0.90844 1.23167 0.99481 0.84380 0.94929 1.87889 1.18661 1.29247 1.94501 1.22540 0.81515 0.98808 0.95355 0.91571 1.21716 1.01203 0.93186 1.03449 1.22088 0.97030 0.84439 0.98442 1.57574 1.15572 1.23445 1.86172 1.00724 0.71798 0.72053 0.74267 1.93500 1.73982 1.55750 1.74504 1.93432 1.34940 1.84718 1.86568 1.30281 1.23432 1.10482 1.23183 1.20754 0.91035 0.92937 0.97015 1.21044 1.09942 1.02934 0.92437 1.21326 0.92210 0.92486 1.00023 1.21539 1.09658 1.01382 0.95467 1.17332 0.85800 0.90570 0.91842 1.20116 1.25918 0.93945 1.11503 0.88579 1.26590 0.96168 0.94688 0.97797 1.69648 1.31525 1.05076 1.37325 0.85805 0.80276 0.77570 0.79289 1.17953 1.19924 1.17977 0.91325 0.92287 0.90389 0.88571 0.92411 0.84827 0.91984 0.92227 0.90260 0.89746 0.89851 0.91958 0.84963 0.84160 0.84429 0.87238 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.56 71.98 0.69 -2.31 16 2 C -0.16 -4.62 3.79 30.59 0.12 -4.50 16 3 C 0.12 3.76 3.17 44.97 0.14 3.90 16 4 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 5 C 0.06 1.52 5.85 72.08 0.42 1.94 16 6 O -0.38 -11.54 10.38 -148.98 -1.55 -13.09 16 7 C 0.08 2.41 3.40 30.69 0.10 2.51 16 8 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 9 C -0.14 -3.64 9.57 71.98 0.69 -2.95 16 10 C 0.11 4.12 4.52 86.35 0.39 4.51 16 11 N -0.99 -38.40 3.24 -489.38 -1.59 -39.99 16 12 S 2.71 119.84 4.54 -56.49 -0.26 119.59 16 13 O -0.99 -41.36 12.41 -128.00 -1.59 -42.95 16 14 O -1.01 -51.66 14.22 -128.00 -1.82 -53.48 16 15 C -0.78 -35.86 5.60 22.73 0.13 -35.74 16 16 C 0.00 0.09 8.38 22.22 0.19 0.27 16 17 C -0.24 -8.92 10.05 22.46 0.23 -8.69 16 18 C -0.04 -1.61 10.02 22.22 0.22 -1.39 16 19 C -0.26 -11.78 7.21 22.73 0.16 -11.62 16 20 C 0.15 7.37 5.03 -21.29 -0.11 7.27 16 21 C -0.49 -25.49 7.32 23.46 0.17 -25.31 16 22 H 0.10 5.54 4.92 -2.91 -0.01 5.52 16 23 C 0.07 3.31 5.46 85.25 0.47 3.77 16 24 N -0.81 -40.31 13.93 21.82 0.30 -40.00 16 25 Si 0.95 39.58 24.56 68.60 1.68 41.27 16 26 H -0.25 -10.08 6.42 99.48 0.64 -9.45 16 27 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 28 H -0.26 -11.02 7.04 99.48 0.70 -10.32 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.27 7.06 -2.39 -0.02 1.25 16 32 H 0.10 3.00 6.40 -2.38 -0.02 2.99 16 33 H 0.06 1.94 4.76 -2.39 -0.01 1.93 16 34 H 0.13 2.57 7.15 -2.39 -0.02 2.56 16 35 H 0.06 1.54 8.13 -2.39 -0.02 1.52 16 36 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.08 3.62 6.12 -2.39 -0.01 3.60 16 40 H 0.06 2.62 8.04 -2.39 -0.02 2.60 16 41 H 0.13 4.77 7.02 -2.91 -0.02 4.74 16 42 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 43 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 44 H 0.11 4.86 4.73 -2.91 -0.01 4.84 16 45 H 0.30 13.30 8.30 -92.71 -0.77 12.53 16 Total: -1.00 -62.38 348.48 0.13 -62.25 By element: Atomic # 1 Polarization: 33.80 SS G_CDS: 0.93 Total: 34.73 kcal Atomic # 6 Polarization: -72.33 SS G_CDS: 4.01 Total: -68.32 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: -1.28 Total: -79.99 kcal Atomic # 8 Polarization: -104.56 SS G_CDS: -4.95 Total: -109.52 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 1.68 Total: 41.27 kcal Atomic # 16 Polarization: 119.84 SS G_CDS: -0.26 Total: 119.59 kcal Total: -62.38 0.13 -62.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601304119.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.112 kcal (2) G-P(sol) polarization free energy of solvation -62.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds