Wall clock time and date at job start Sat Apr 11 2020 05:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46882 * 2 1 4 4 H 1.08996 * 109.67993 * 305.14397 * 3 2 1 5 5 C 1.53294 * 109.68066 * 184.58493 * 3 2 1 6 6 O 1.42965 * 109.22153 * 292.58058 * 5 3 2 7 7 C 1.42962 * 114.16764 * 297.41689 * 6 5 3 8 8 H 1.09000 * 109.51569 * 302.66300 * 7 6 5 9 9 C 1.52996 * 109.55977 * 182.53100 * 7 6 5 10 10 C 1.53295 * 109.22311 * 62.58273 * 7 6 5 11 11 N 1.47154 * 109.68105 * 65.65866 * 3 2 1 12 12 S 1.65595 * 120.98393 * 249.20797 * 11 3 2 13 13 O 1.42101 * 106.40145 * 29.97997 * 12 11 3 14 14 O 1.42093 * 106.40807 * 162.90284 * 12 11 3 15 15 C 1.76196 * 107.21933 * 276.44677 * 12 11 3 16 16 C 1.37644 * 120.13312 * 113.83972 * 15 12 11 17 17 C 1.38609 * 120.24848 * 179.97438 * 16 15 12 18 18 C 1.38654 * 120.50350 * 0.02562 * 17 16 15 19 19 C 1.37593 * 120.25029 * 0.02961 * 18 17 16 20 20 C 1.40702 * 120.12762 * 293.56508 * 15 12 11 21 21 C 1.41397 * 120.23808 * 359.97438 * 20 15 12 22 22 H 1.07997 * 120.00425 * 328.77869 * 21 20 15 23 23 C 1.39948 * 119.99827 * 148.78537 * 21 20 15 24 24 N 1.30823 * 119.99954 * 164.36494 * 23 21 20 25 25 Si 1.86799 * 120.00141 * 344.36719 * 23 21 20 26 26 H 1.48504 * 109.46941 * 89.90022 * 25 23 21 27 27 H 1.48496 * 109.47426 * 209.90111 * 25 23 21 28 28 H 1.48502 * 109.47214 * 329.90355 * 25 23 21 29 29 H 1.08998 * 109.46901 * 174.76140 * 1 2 3 30 30 H 1.09000 * 109.47134 * 294.75930 * 1 2 3 31 31 H 1.08997 * 109.47550 * 54.75879 * 1 2 3 32 32 H 1.08998 * 109.46856 * 119.99509 * 2 1 3 33 33 H 1.08999 * 109.47011 * 240.00139 * 2 1 3 34 34 H 1.09001 * 109.51487 * 52.49901 * 5 3 2 35 35 H 1.08992 * 109.51260 * 172.65855 * 5 3 2 36 36 H 1.09005 * 109.46996 * 300.23494 * 9 7 6 37 37 H 1.09010 * 109.46787 * 60.22490 * 9 7 6 38 38 H 1.08990 * 109.47663 * 180.22580 * 9 7 6 39 39 H 1.09000 * 109.68356 * 187.97767 * 10 7 6 40 40 H 1.09002 * 109.71173 * 67.43647 * 10 7 6 41 41 H 1.07992 * 119.87206 * 0.02562 * 16 15 12 42 42 H 1.07999 * 119.74900 * 180.02562 * 17 16 15 43 43 H 1.08006 * 119.87689 * 179.97438 * 18 17 16 44 44 H 1.08001 * 120.12881 * 179.97438 * 19 18 17 45 45 H 0.97001 * 119.99886 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9856 -0.8392 5 6 3.5686 1.4498 -0.1154 6 8 4.1332 0.9006 1.0777 7 6 3.8435 1.6492 2.2607 8 1 4.1948 2.6738 2.1385 9 6 4.5469 1.0072 3.4582 10 6 2.3290 1.6522 2.4978 11 7 1.6667 2.1002 1.2624 12 16 0.5345 3.3082 1.2921 13 8 -0.3662 3.0403 0.2261 14 8 0.1207 3.4374 2.6452 15 6 1.3614 4.8084 0.8793 16 6 1.0591 5.4642 -0.2925 17 6 1.7077 6.6447 -0.6193 18 6 2.6672 7.1783 0.2275 19 6 2.9863 6.5393 1.4035 20 6 2.3292 5.3437 1.7490 21 6 2.6435 4.6821 2.9585 22 1 1.8854 4.1121 3.4751 23 6 3.9369 4.7659 3.4864 24 7 4.1589 4.4271 4.7303 25 14 5.3462 5.3617 2.4148 26 1 5.4680 6.8371 2.5325 27 1 6.6109 4.7235 2.8603 28 1 5.0800 4.9984 0.9998 29 1 -0.3633 -1.0234 -0.0938 30 1 -0.3633 0.4304 0.9332 31 1 -0.3634 0.5930 -0.8393 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.8719 0.8480 -0.9721 35 1 3.9189 2.4735 -0.2462 36 1 4.1963 -0.0179 3.5787 37 1 5.6237 1.0054 3.2889 38 1 4.3218 1.5766 4.3599 39 1 2.0863 2.3345 3.3126 40 1 1.9943 0.6459 2.7496 41 1 0.3131 5.0578 -0.9593 42 1 1.4640 7.1528 -1.5406 43 1 3.1667 8.0986 -0.0374 44 1 3.7343 6.9564 2.0615 45 1 5.0555 4.4849 5.0961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601304125.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:07 Heat of formation + Delta-G solvation = -102.188674 kcal Electronic energy + Delta-G solvation = -30719.458694 eV Core-core repulsion = 26828.577795 eV Total energy + Delta-G solvation = -3890.880899 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.29886 -37.93922 -36.52005 -35.18332 -34.92676 -34.06105 -32.97402 -31.08266 -30.74766 -30.17096 -27.88060 -25.69815 -25.18148 -23.37048 -22.13809 -21.79392 -21.23478 -19.67682 -18.17897 -17.79641 -17.43511 -16.48368 -16.19135 -15.55484 -15.37905 -14.92118 -14.57968 -14.43427 -14.25610 -13.92998 -13.67373 -13.58435 -13.43297 -12.94928 -12.65193 -12.35749 -12.03576 -11.88120 -11.81540 -11.75762 -11.53770 -11.44513 -11.38955 -11.35685 -11.21976 -11.05310 -10.90132 -10.81361 -10.58260 -10.51679 -10.50500 -10.08592 -9.85890 -9.63350 -9.48975 -9.27893 -8.35695 -8.17659 -7.91436 -7.28356 -4.96051 1.34808 2.00556 2.43916 2.85711 2.95972 3.04285 3.64875 3.69591 4.11464 4.16624 4.62037 4.93444 4.97918 5.12288 5.19078 5.33225 5.41882 5.54186 5.63135 5.67867 5.76595 5.79860 5.81219 5.85446 5.90702 6.02661 6.09541 6.12810 6.16728 6.19410 6.23473 6.34244 6.38156 6.46520 6.53772 6.56719 6.64975 6.75426 6.87195 7.01781 7.07980 7.24065 7.36922 7.49176 7.59755 7.76072 8.05678 8.24331 8.44509 9.68247 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010839 B = 0.008267 C = 0.006005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.693883 B = 3386.299999 C = 4661.497596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.123 3.877 4 H 0.097 0.903 5 C 0.055 3.945 6 O -0.381 6.381 7 C 0.075 3.925 8 H 0.075 0.925 9 C -0.142 4.142 10 C 0.100 3.900 11 N -0.989 5.989 12 S 2.703 3.297 13 O -0.988 6.988 14 O -0.966 6.966 15 C -0.772 4.772 16 C 0.016 3.984 17 C -0.258 4.258 18 C -0.043 4.043 19 C -0.239 4.239 20 C 0.166 3.834 21 C -0.463 4.463 22 H 0.133 0.867 23 C 0.094 3.906 24 N -0.771 5.771 25 Si 0.896 3.104 26 H -0.265 1.265 27 H -0.283 1.283 28 H -0.244 1.244 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.083 0.917 39 H 0.118 0.882 40 H 0.063 0.937 41 H 0.113 0.887 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.108 0.892 45 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.182 -5.868 -5.690 8.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C 0.016 3.984 4 H 0.115 0.885 5 C -0.023 4.023 6 O -0.300 6.300 7 C 0.016 3.984 8 H 0.093 0.907 9 C -0.200 4.200 10 C -0.025 4.025 11 N -0.825 5.825 12 S 2.802 3.198 13 O -0.978 6.978 14 O -0.956 6.956 15 C -0.866 4.866 16 C -0.003 4.003 17 C -0.278 4.278 18 C -0.062 4.062 19 C -0.258 4.258 20 C 0.161 3.839 21 C -0.489 4.489 22 H 0.150 0.850 23 C -0.130 4.130 24 N -0.392 5.392 25 Si 0.722 3.278 26 H -0.191 1.191 27 H -0.209 1.209 28 H -0.167 1.167 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.136 0.864 40 H 0.081 0.919 41 H 0.131 0.869 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.126 0.874 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.510 -6.254 -5.183 8.261 hybrid contribution 1.227 1.302 -0.558 1.874 sum 2.736 -4.951 -5.740 8.059 Atomic orbital electron populations 1.21767 0.95502 1.00843 1.02657 1.21738 0.96224 0.95821 1.02496 1.21576 0.95890 0.94447 0.86481 0.88491 1.22886 0.91963 0.99430 0.88051 1.87841 1.74487 1.52444 1.15180 1.22486 0.94458 0.96186 0.85247 0.90714 1.21725 1.00221 1.01032 0.96999 1.22153 0.92402 1.01029 0.86941 1.57838 1.60296 1.51866 1.12478 1.01141 0.72690 0.73008 0.73005 1.93453 1.61480 1.85353 1.57541 1.93498 1.80313 1.86502 1.35334 1.30024 1.25428 1.24176 1.07004 1.20401 0.93996 0.93238 0.92714 1.20516 1.04828 1.00552 1.01894 1.20852 0.94869 0.97007 0.93481 1.21320 1.06509 0.98546 0.99440 1.17088 0.87404 0.89572 0.89844 1.20427 0.98175 1.27260 1.03056 0.84982 1.26129 1.00472 0.91813 0.94551 1.69655 1.24750 1.32264 1.12558 0.86600 0.78974 0.79575 0.82654 1.19127 1.20934 1.16687 0.93237 0.93274 0.91727 0.91033 0.91366 0.88580 0.92543 0.92358 0.92443 0.89843 0.86429 0.91916 0.86866 0.88085 0.88284 0.87397 0.89670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.03 37.16 0.34 -1.80 16 2 C -0.12 -1.68 5.34 -26.73 -0.14 -1.83 16 3 C 0.12 1.92 2.52 -67.42 -0.17 1.75 16 4 H 0.10 1.48 7.44 -51.93 -0.39 1.09 16 5 C 0.06 0.83 6.36 37.31 0.24 1.07 16 6 O -0.38 -6.33 10.11 -35.23 -0.36 -6.69 16 7 C 0.07 1.32 3.32 -26.58 -0.09 1.23 16 8 H 0.08 1.48 4.79 -51.93 -0.25 1.23 16 9 C -0.14 -2.22 9.57 37.16 0.36 -1.86 16 10 C 0.10 1.82 4.59 -3.53 -0.02 1.80 16 11 N -0.99 -18.22 2.62 -106.02 -0.28 -18.49 16 12 S 2.70 57.68 5.09 -107.50 -0.55 57.13 16 13 O -0.99 -21.04 15.05 -57.17 -0.86 -21.90 16 14 O -0.97 -23.31 14.46 -57.17 -0.83 -24.14 16 15 C -0.77 -17.41 5.97 -38.87 -0.23 -17.64 16 16 C 0.02 0.34 9.54 -39.66 -0.38 -0.04 16 17 C -0.26 -5.12 10.05 -39.29 -0.39 -5.52 16 18 C -0.04 -0.89 10.02 -39.66 -0.40 -1.28 16 19 C -0.24 -5.40 7.22 -38.88 -0.28 -5.68 16 20 C 0.17 3.94 5.10 -106.82 -0.54 3.39 16 21 C -0.46 -11.09 6.54 -37.74 -0.25 -11.34 16 22 H 0.13 3.39 4.13 -52.49 -0.22 3.18 16 23 C 0.09 2.13 4.33 -17.34 -0.08 2.05 16 24 N -0.77 -17.28 13.93 55.55 0.77 -16.51 16 25 Si 0.90 18.54 23.27 -169.99 -3.95 14.58 16 26 H -0.27 -5.42 6.48 56.52 0.37 -5.05 16 27 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 28 H -0.24 -5.19 6.99 56.52 0.40 -4.79 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.78 7.88 -51.93 -0.41 0.37 16 31 H 0.06 0.95 7.98 -51.93 -0.41 0.54 16 32 H 0.07 1.00 7.13 -51.93 -0.37 0.63 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16 38 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.12 2.41 4.81 -51.93 -0.25 2.16 16 40 H 0.06 1.03 7.52 -51.93 -0.39 0.64 16 41 H 0.11 2.16 7.32 -52.49 -0.38 1.78 16 42 H 0.10 1.72 8.06 -52.49 -0.42 1.29 16 43 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 44 H 0.11 2.39 4.54 -52.49 -0.24 2.15 16 45 H 0.29 5.93 8.30 -40.82 -0.34 5.59 16 LS Contribution 349.52 15.07 5.27 5.27 Total: -1.00 -26.91 349.52 -9.11 -36.02 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -6.29 Total: 10.40 kcal Atomic # 6 Polarization: -33.64 SS G_CDS: -2.04 Total: -35.68 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.50 Total: -35.00 kcal Atomic # 8 Polarization: -50.68 SS G_CDS: -2.04 Total: -52.72 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -3.95 Total: 14.58 kcal Atomic # 16 Polarization: 57.68 SS G_CDS: -0.55 Total: 57.13 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -26.91 -9.11 -36.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601304125.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.165 kcal (2) G-P(sol) polarization free energy of solvation -26.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds