Wall clock time and date at job start Sat Apr 11 2020 05:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46882 * 2 1 4 4 H 1.08996 * 109.67993 * 305.14397 * 3 2 1 5 5 C 1.53294 * 109.68066 * 184.58493 * 3 2 1 6 6 O 1.42965 * 109.22153 * 292.58058 * 5 3 2 7 7 C 1.42962 * 114.16764 * 297.41689 * 6 5 3 8 8 H 1.09000 * 109.51569 * 302.66300 * 7 6 5 9 9 C 1.52996 * 109.55977 * 182.53100 * 7 6 5 10 10 C 1.53295 * 109.22311 * 62.58273 * 7 6 5 11 11 N 1.47154 * 109.68105 * 65.65866 * 3 2 1 12 12 S 1.65595 * 120.98393 * 249.20797 * 11 3 2 13 13 O 1.42101 * 106.40145 * 29.97997 * 12 11 3 14 14 O 1.42093 * 106.40807 * 162.90284 * 12 11 3 15 15 C 1.76196 * 107.21933 * 276.44677 * 12 11 3 16 16 C 1.37644 * 120.13312 * 113.83972 * 15 12 11 17 17 C 1.38609 * 120.24848 * 179.97438 * 16 15 12 18 18 C 1.38654 * 120.50350 * 0.02562 * 17 16 15 19 19 C 1.37593 * 120.25029 * 0.02961 * 18 17 16 20 20 C 1.40702 * 120.12762 * 293.56508 * 15 12 11 21 21 C 1.41397 * 120.23808 * 359.97438 * 20 15 12 22 22 H 1.07997 * 120.00425 * 328.77869 * 21 20 15 23 23 C 1.39948 * 119.99827 * 148.78537 * 21 20 15 24 24 N 1.30823 * 119.99954 * 164.36494 * 23 21 20 25 25 Si 1.86799 * 120.00141 * 344.36719 * 23 21 20 26 26 H 1.48504 * 109.46941 * 89.90022 * 25 23 21 27 27 H 1.48496 * 109.47426 * 209.90111 * 25 23 21 28 28 H 1.48502 * 109.47214 * 329.90355 * 25 23 21 29 29 H 1.08998 * 109.46901 * 174.76140 * 1 2 3 30 30 H 1.09000 * 109.47134 * 294.75930 * 1 2 3 31 31 H 1.08997 * 109.47550 * 54.75879 * 1 2 3 32 32 H 1.08998 * 109.46856 * 119.99509 * 2 1 3 33 33 H 1.08999 * 109.47011 * 240.00139 * 2 1 3 34 34 H 1.09001 * 109.51487 * 52.49901 * 5 3 2 35 35 H 1.08992 * 109.51260 * 172.65855 * 5 3 2 36 36 H 1.09005 * 109.46996 * 300.23494 * 9 7 6 37 37 H 1.09010 * 109.46787 * 60.22490 * 9 7 6 38 38 H 1.08990 * 109.47663 * 180.22580 * 9 7 6 39 39 H 1.09000 * 109.68356 * 187.97767 * 10 7 6 40 40 H 1.09002 * 109.71173 * 67.43647 * 10 7 6 41 41 H 1.07992 * 119.87206 * 0.02562 * 16 15 12 42 42 H 1.07999 * 119.74900 * 180.02562 * 17 16 15 43 43 H 1.08006 * 119.87689 * 179.97438 * 18 17 16 44 44 H 1.08001 * 120.12881 * 179.97438 * 19 18 17 45 45 H 0.97001 * 119.99886 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9856 -0.8392 5 6 3.5686 1.4498 -0.1154 6 8 4.1332 0.9006 1.0777 7 6 3.8435 1.6492 2.2607 8 1 4.1948 2.6738 2.1385 9 6 4.5469 1.0072 3.4582 10 6 2.3290 1.6522 2.4978 11 7 1.6667 2.1002 1.2624 12 16 0.5345 3.3082 1.2921 13 8 -0.3662 3.0403 0.2261 14 8 0.1207 3.4374 2.6452 15 6 1.3614 4.8084 0.8793 16 6 1.0591 5.4642 -0.2925 17 6 1.7077 6.6447 -0.6193 18 6 2.6672 7.1783 0.2275 19 6 2.9863 6.5393 1.4035 20 6 2.3292 5.3437 1.7490 21 6 2.6435 4.6821 2.9585 22 1 1.8854 4.1121 3.4751 23 6 3.9369 4.7659 3.4864 24 7 4.1589 4.4271 4.7303 25 14 5.3462 5.3617 2.4148 26 1 5.4680 6.8371 2.5325 27 1 6.6109 4.7235 2.8603 28 1 5.0800 4.9984 0.9998 29 1 -0.3633 -1.0234 -0.0938 30 1 -0.3633 0.4304 0.9332 31 1 -0.3634 0.5930 -0.8393 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.8719 0.8480 -0.9721 35 1 3.9189 2.4735 -0.2462 36 1 4.1963 -0.0179 3.5787 37 1 5.6237 1.0054 3.2889 38 1 4.3218 1.5766 4.3599 39 1 2.0863 2.3345 3.3126 40 1 1.9943 0.6459 2.7496 41 1 0.3131 5.0578 -0.9593 42 1 1.4640 7.1528 -1.5406 43 1 3.1667 8.0986 -0.0374 44 1 3.7343 6.9564 2.0615 45 1 5.0555 4.4849 5.0961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601304125.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:06 Heat of formation + Delta-G solvation = -119.417308 kcal Electronic energy + Delta-G solvation = -30720.205783 eV Core-core repulsion = 26828.577795 eV Total energy + Delta-G solvation = -3891.627989 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.62406 -39.59995 -38.23647 -36.76471 -36.40536 -35.73718 -34.33561 -32.53970 -32.22255 -31.82468 -29.12604 -27.31621 -26.66743 -24.57098 -23.78099 -23.13943 -22.85402 -21.06555 -19.74004 -19.47016 -19.00276 -18.12474 -17.55686 -17.19392 -16.87835 -16.32446 -16.05594 -15.92896 -15.61729 -15.42292 -15.32075 -15.07619 -14.72778 -14.60457 -14.04048 -13.90208 -13.64113 -13.31109 -13.16438 -13.13435 -13.07704 -12.97825 -12.91879 -12.83900 -12.71846 -12.54874 -12.50786 -12.32885 -12.10888 -11.81214 -11.71513 -11.70096 -11.26796 -11.18215 -11.07742 -10.86351 -9.99660 -9.61974 -9.57480 -8.98822 -6.71448 -0.28691 0.32423 0.75683 1.19241 1.30815 1.38104 2.00304 2.13469 2.47263 2.85639 2.94000 3.29387 3.54467 3.75306 3.88240 4.07177 4.09206 4.18905 4.21740 4.28202 4.36858 4.42374 4.54731 4.59602 4.61461 4.67911 4.73142 4.74556 4.82290 4.90040 4.91276 5.04083 5.06085 5.14529 5.17305 5.21524 5.29538 5.36823 5.41002 5.52030 5.52884 5.68788 5.78304 5.81982 6.08460 6.27252 6.28633 6.52994 6.69672 8.03087 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010839 B = 0.008267 C = 0.006005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.693883 B = 3386.299999 C = 4661.497596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C 0.113 3.887 4 H 0.101 0.899 5 C 0.053 3.947 6 O -0.378 6.378 7 C 0.078 3.922 8 H 0.051 0.949 9 C -0.137 4.137 10 C 0.102 3.898 11 N -0.985 5.985 12 S 2.712 3.288 13 O -0.991 6.991 14 O -1.002 7.002 15 C -0.789 4.789 16 C 0.003 3.997 17 C -0.251 4.251 18 C -0.042 4.042 19 C -0.264 4.264 20 C 0.148 3.852 21 C -0.481 4.481 22 H 0.106 0.894 23 C 0.080 3.920 24 N -0.793 5.793 25 Si 0.930 3.070 26 H -0.261 1.261 27 H -0.268 1.268 28 H -0.255 1.255 29 H 0.073 0.927 30 H 0.023 0.977 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.136 0.864 35 H 0.039 0.961 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.130 0.870 42 H 0.138 0.862 43 H 0.135 0.865 44 H 0.107 0.893 45 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.219 -6.437 -8.030 10.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C 0.008 3.992 4 H 0.119 0.881 5 C -0.025 4.025 6 O -0.297 6.297 7 C 0.019 3.981 8 H 0.069 0.931 9 C -0.195 4.195 10 C -0.023 4.023 11 N -0.823 5.823 12 S 2.811 3.189 13 O -0.982 6.982 14 O -0.993 6.993 15 C -0.882 4.882 16 C -0.017 4.017 17 C -0.270 4.270 18 C -0.060 4.060 19 C -0.284 4.284 20 C 0.143 3.857 21 C -0.508 4.508 22 H 0.124 0.876 23 C -0.142 4.142 24 N -0.415 5.415 25 Si 0.754 3.246 26 H -0.187 1.187 27 H -0.194 1.194 28 H -0.179 1.179 29 H 0.092 0.908 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.120 0.880 34 H 0.154 0.846 35 H 0.058 0.942 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.098 0.902 41 H 0.148 0.852 42 H 0.155 0.845 43 H 0.153 0.847 44 H 0.125 0.875 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.543 -6.814 -7.521 10.463 hybrid contribution 0.815 1.489 0.060 1.699 sum 3.358 -5.325 -7.461 9.762 Atomic orbital electron populations 1.21783 0.96145 1.02022 1.00948 1.21734 0.95561 0.94327 1.03968 1.21927 0.96567 0.95636 0.85104 0.88137 1.23081 0.91335 0.99463 0.88627 1.87839 1.74550 1.52117 1.15205 1.22378 0.93847 0.95421 0.86496 0.93069 1.21677 1.00600 1.01664 0.95533 1.22106 0.93070 1.00939 0.86163 1.57612 1.59839 1.51116 1.13729 1.00689 0.72999 0.73196 0.72055 1.93431 1.62029 1.85468 1.57268 1.93449 1.81411 1.87114 1.37336 1.30263 1.25265 1.25104 1.07600 1.20742 0.94592 0.93842 0.92486 1.20983 1.03494 0.99763 1.02806 1.21285 0.94503 0.97845 0.92392 1.21462 1.07326 0.98745 1.00853 1.17292 0.88159 0.90192 0.90024 1.20270 0.98420 1.28292 1.03832 0.87645 1.26415 1.01095 0.91672 0.95054 1.69650 1.25709 1.32952 1.13184 0.86077 0.77904 0.79536 0.81046 1.18653 1.19436 1.17880 0.90803 0.95818 0.92428 0.91254 0.88034 0.84614 0.94210 0.90445 0.91537 0.91199 0.89283 0.90201 0.85233 0.84455 0.84737 0.87520 0.88714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.07 9.03 71.98 0.65 -3.42 16 2 C -0.12 -2.88 5.34 30.60 0.16 -2.72 16 3 C 0.11 3.38 2.52 44.97 0.11 3.50 16 4 H 0.10 2.91 7.44 -2.39 -0.02 2.90 16 5 C 0.05 1.49 6.36 72.08 0.46 1.95 16 6 O -0.38 -11.93 10.11 -148.98 -1.51 -13.44 16 7 C 0.08 2.73 3.32 30.69 0.10 2.83 16 8 H 0.05 2.07 4.79 -2.39 -0.01 2.05 16 9 C -0.14 -4.20 9.57 71.98 0.69 -3.51 16 10 C 0.10 3.81 4.59 86.35 0.40 4.21 16 11 N -0.99 -36.55 2.62 -489.34 -1.28 -37.83 16 12 S 2.71 118.57 5.09 -56.49 -0.29 118.28 16 13 O -0.99 -42.41 15.05 -128.00 -1.93 -44.33 16 14 O -1.00 -50.94 14.46 -128.00 -1.85 -52.79 16 15 C -0.79 -35.88 5.97 22.73 0.14 -35.75 16 16 C 0.00 0.12 9.54 22.22 0.21 0.34 16 17 C -0.25 -9.27 10.05 22.46 0.23 -9.05 16 18 C -0.04 -1.61 10.02 22.22 0.22 -1.39 16 19 C -0.26 -11.84 7.22 22.73 0.16 -11.68 16 20 C 0.15 7.15 5.10 -21.29 -0.11 7.04 16 21 C -0.48 -24.01 6.54 23.46 0.15 -23.86 16 22 H 0.11 5.78 4.13 -2.91 -0.01 5.77 16 23 C 0.08 3.70 4.33 85.26 0.37 4.07 16 24 N -0.79 -36.55 13.93 21.83 0.30 -36.25 16 25 Si 0.93 37.92 23.27 68.60 1.60 39.52 16 26 H -0.26 -10.32 6.48 99.48 0.64 -9.68 16 27 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 28 H -0.25 -10.77 6.99 99.48 0.70 -10.07 16 29 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.02 0.73 7.88 -2.39 -0.02 0.71 16 31 H 0.06 1.61 7.98 -2.39 -0.02 1.59 16 32 H 0.07 1.77 7.13 -2.39 -0.02 1.75 16 33 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.14 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 38 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.09 3.89 4.81 -2.39 -0.01 3.87 16 40 H 0.08 2.63 7.52 -2.39 -0.02 2.61 16 41 H 0.13 4.74 7.32 -2.91 -0.02 4.71 16 42 H 0.14 4.06 8.06 -2.91 -0.02 4.03 16 43 H 0.13 4.15 8.06 -2.91 -0.02 4.12 16 44 H 0.11 4.70 4.54 -2.91 -0.01 4.69 16 45 H 0.30 12.44 8.30 -92.71 -0.77 11.67 16 Total: -1.00 -59.35 349.52 -0.07 -59.42 By element: Atomic # 1 Polarization: 33.92 SS G_CDS: 0.93 Total: 34.85 kcal Atomic # 6 Polarization: -71.39 SS G_CDS: 3.95 Total: -67.44 kcal Atomic # 7 Polarization: -73.11 SS G_CDS: -0.98 Total: -74.08 kcal Atomic # 8 Polarization: -105.27 SS G_CDS: -5.28 Total: -110.56 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 1.60 Total: 39.52 kcal Atomic # 16 Polarization: 118.57 SS G_CDS: -0.29 Total: 118.28 kcal Total: -59.35 -0.07 -59.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601304125.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.993 kcal (2) G-P(sol) polarization free energy of solvation -59.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds