Wall clock time and date at job start Sat Apr 11 2020 05:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.51319 * 2 1 4 4 C 1.53301 * 109.51008 * 239.89897 * 2 1 3 5 5 N 1.47153 * 108.38253 * 187.72310 * 4 2 1 6 6 S 1.65601 * 120.97997 * 230.51458 * 5 4 2 7 7 O 1.42093 * 106.40230 * 346.92951 * 6 5 4 8 8 O 1.42099 * 106.39870 * 214.01348 * 6 5 4 9 9 C 1.76194 * 107.21716 * 100.47400 * 6 5 4 10 10 C 1.37639 * 120.13072 * 110.62892 * 9 6 5 11 11 C 1.38610 * 120.24965 * 180.02562 * 10 9 6 12 12 C 1.38649 * 120.50269 * 0.02562 * 11 10 9 13 13 C 1.37593 * 120.24943 * 359.97438 * 12 11 10 14 14 C 1.40701 * 120.12729 * 290.64132 * 9 6 5 15 15 C 1.41394 * 120.24289 * 359.96313 * 14 9 6 16 16 H 1.08001 * 120.00207 * 39.19423 * 15 14 9 17 17 C 1.39941 * 119.99998 * 219.18751 * 15 14 9 18 18 N 1.30824 * 120.00121 * 355.68680 * 17 15 14 19 19 Si 1.86804 * 120.00072 * 175.67691 * 17 15 14 20 20 H 1.48498 * 109.46618 * 90.00527 * 19 17 15 21 21 H 1.48498 * 109.47060 * 210.00459 * 19 17 15 22 22 H 1.48498 * 109.47130 * 330.00592 * 19 17 15 23 23 C 1.47149 * 118.03686 * 50.78860 * 5 4 2 24 24 C 1.53721 * 108.16084 * 309.15983 * 23 5 4 25 25 C 1.52999 * 109.65159 * 292.56932 * 24 23 5 26 26 C 1.52998 * 109.44173 * 172.37444 * 24 23 5 27 27 O 1.42956 * 109.55250 * 120.13044 * 2 1 3 28 28 H 1.08997 * 109.47178 * 180.10265 * 1 2 3 29 29 H 1.09004 * 109.46710 * 300.10355 * 1 2 3 30 30 H 1.09002 * 109.47035 * 60.09706 * 1 2 3 31 31 H 1.09000 * 109.67736 * 68.00216 * 4 2 1 32 32 H 1.09003 * 109.71142 * 307.46617 * 4 2 1 33 33 H 1.08001 * 119.87477 * 359.97438 * 10 9 6 34 34 H 1.08005 * 119.75000 * 179.97438 * 11 10 9 35 35 H 1.08000 * 119.87913 * 179.70357 * 12 11 10 36 36 H 1.07997 * 120.13314 * 179.97438 * 13 12 11 37 37 H 0.96996 * 119.99893 * 179.97438 * 18 17 15 38 38 H 1.08998 * 109.68419 * 68.93010 * 23 5 4 39 39 H 1.08997 * 109.68616 * 189.49062 * 23 5 4 40 40 H 1.09003 * 109.46621 * 179.74240 * 25 24 23 41 41 H 1.08999 * 109.47651 * 299.74222 * 25 24 23 42 42 H 1.08998 * 109.47195 * 59.74702 * 25 24 23 43 43 H 1.09001 * 109.47119 * 300.38270 * 26 24 23 44 44 H 1.08999 * 109.47247 * 60.38578 * 26 24 23 45 45 H 1.09000 * 109.47088 * 180.38334 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0420 -0.7247 -1.2501 5 7 3.5014 -0.8747 -1.1346 6 16 4.5057 -0.4166 -2.3691 7 8 3.6771 -0.2102 -3.5048 8 8 5.5963 -1.3275 -2.3579 9 6 5.1692 1.1593 -1.9441 10 6 6.5022 1.2845 -1.6249 11 6 7.0266 2.5230 -1.2898 12 6 6.2171 3.6484 -1.2713 13 6 4.8817 3.5469 -1.5869 14 6 4.3383 2.2947 -1.9295 15 6 2.9676 2.1784 -2.2561 16 1 2.4028 1.3219 -1.9187 17 6 2.3426 3.1731 -3.0165 18 7 3.0032 4.2508 -3.3536 19 14 0.5649 2.9621 -3.5505 20 1 -0.3337 3.5359 -2.5168 21 1 0.3487 3.6657 -4.8402 22 1 0.2669 1.5171 -3.7187 23 6 4.0414 -1.4493 0.1077 24 6 3.4323 -0.6844 1.2938 25 6 3.9531 0.7542 1.3004 26 6 3.8234 -1.3766 2.6011 27 8 2.0085 -0.6762 1.1651 28 1 -0.3633 -1.0276 0.0018 29 1 -0.3633 0.5155 0.8891 30 1 -0.3633 0.5123 -0.8909 31 1 1.8023 -0.1393 -2.1378 32 1 1.5765 -1.7077 -1.3218 33 1 7.1418 0.4143 -1.6349 34 1 8.0737 2.6119 -1.0403 35 1 6.6352 4.6077 -1.0040 36 1 4.2527 4.4247 -1.5715 37 1 2.5701 4.9401 -3.8809 38 1 3.7737 -2.5040 0.1712 39 1 5.1262 -1.3441 0.1197 40 1 3.5159 1.2950 2.1398 41 1 5.0387 0.7473 1.3986 42 1 3.6757 1.2453 0.3677 43 1 3.4537 -2.4020 2.5940 44 1 4.9090 -1.3824 2.6985 45 1 3.3860 -0.8385 3.4421 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601319387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:10 Heat of formation + Delta-G solvation = -113.273700 kcal Electronic energy + Delta-G solvation = -30589.560038 eV Core-core repulsion = 26698.198456 eV Total energy + Delta-G solvation = -3891.361582 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.91327 -39.37631 -38.18188 -36.71532 -35.85496 -35.51326 -35.24859 -32.05131 -31.46795 -31.36835 -28.29357 -28.06353 -27.18450 -25.81166 -23.45101 -22.91397 -22.78134 -20.56404 -19.84687 -19.42470 -18.85255 -17.81029 -17.67414 -17.21965 -16.75365 -16.12491 -16.07200 -15.82444 -15.42531 -15.32401 -15.06246 -14.90867 -14.44314 -14.16798 -13.77609 -13.55767 -13.49750 -13.30086 -13.09450 -13.02714 -13.00354 -12.93172 -12.88542 -12.78886 -12.76865 -12.72143 -12.63413 -12.30286 -12.21566 -12.12293 -11.91291 -11.65771 -11.34671 -11.11230 -10.98726 -10.84658 -9.82209 -9.61583 -9.27926 -8.68410 -6.57831 -0.29896 0.51215 0.98737 1.35660 1.44386 1.53790 2.15541 2.18242 2.70930 2.73356 2.95870 3.42078 3.53489 3.77718 3.79249 4.04883 4.09177 4.12918 4.31146 4.31918 4.38533 4.44927 4.51291 4.67288 4.70316 4.72196 4.80241 4.82101 4.85712 4.97536 5.01093 5.06144 5.11678 5.18216 5.20356 5.28266 5.30265 5.40621 5.49313 5.54076 5.62397 5.72854 5.90224 5.99681 6.12320 6.34783 6.49940 6.77185 6.85313 8.27444 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009858 B = 0.007792 C = 0.005985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.769547 B = 3592.493307 C = 4677.060341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.067 3.933 3 H 0.062 0.938 4 C 0.083 3.917 5 N -0.997 5.997 6 S 2.705 3.295 7 O -0.989 6.989 8 O -1.006 7.006 9 C -0.772 4.772 10 C -0.021 4.021 11 C -0.236 4.236 12 C -0.077 4.077 13 C -0.174 4.174 14 C 0.176 3.824 15 C -0.490 4.490 16 H 0.107 0.893 17 C 0.043 3.957 18 N -0.825 5.825 19 Si 0.951 3.049 20 H -0.243 1.243 21 H -0.273 1.273 22 H -0.248 1.248 23 C 0.099 3.901 24 C 0.102 3.898 25 C -0.182 4.182 26 C -0.130 4.130 27 O -0.370 6.370 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.121 0.879 34 H 0.128 0.872 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.289 0.711 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.326 -6.264 9.656 11.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.008 3.992 3 H 0.080 0.920 4 C -0.042 4.042 5 N -0.835 5.835 6 S 2.804 3.196 7 O -0.979 6.979 8 O -0.997 6.997 9 C -0.867 4.867 10 C -0.041 4.041 11 C -0.256 4.256 12 C -0.096 4.096 13 C -0.194 4.194 14 C 0.172 3.828 15 C -0.519 4.519 16 H 0.124 0.876 17 C -0.173 4.173 18 N -0.451 5.451 19 Si 0.771 3.229 20 H -0.166 1.166 21 H -0.198 1.198 22 H -0.171 1.171 23 C -0.026 4.026 24 C 0.061 3.939 25 C -0.240 4.240 26 C -0.188 4.188 27 O -0.290 6.290 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.139 0.861 34 H 0.145 0.855 35 H 0.138 0.862 36 H 0.129 0.871 37 H 0.099 0.901 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.093 0.907 44 H 0.105 0.895 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.310 -6.671 8.880 11.589 hybrid contribution -0.026 1.283 -0.589 1.412 sum -3.336 -5.388 8.291 10.435 Atomic orbital electron populations 1.21757 0.90895 1.03897 1.03325 1.22545 0.96343 0.95764 0.84509 0.91982 1.22389 0.79036 1.02545 1.00222 1.57690 1.16319 1.77590 1.31898 1.00882 0.72083 0.73691 0.72928 1.93474 1.68510 1.87086 1.48831 1.93419 1.55083 1.63972 1.87210 1.30296 1.03782 1.19812 1.32772 1.20561 0.92741 0.97944 0.92842 1.20902 0.99871 0.92665 1.12157 1.21278 0.93903 0.98092 0.96302 1.21618 0.95387 0.98506 1.03892 1.17222 0.92461 0.90182 0.82980 1.20391 0.95057 1.07322 1.29179 0.87553 1.26611 1.03699 0.93025 0.93950 1.69795 1.39283 1.07082 1.28948 0.85629 0.77274 0.80883 0.79150 1.16614 1.19798 1.17082 1.22340 0.99020 0.98531 0.82740 1.22000 0.81183 0.94872 0.95811 1.22455 1.01824 0.96843 1.02833 1.21731 1.02521 1.00963 0.93558 1.87894 1.20770 1.77184 1.43140 0.90346 0.90762 0.90628 0.88819 0.88979 0.86131 0.85457 0.86157 0.87059 0.90068 0.88866 0.89098 0.91735 0.91488 0.92512 0.90692 0.89489 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.57 71.98 0.69 -2.74 16 2 C 0.07 2.07 2.71 30.70 0.08 2.15 16 3 H 0.06 2.20 5.21 -2.39 -0.01 2.18 16 4 C 0.08 2.76 4.84 86.36 0.42 3.18 16 5 N -1.00 -35.72 2.80 -510.84 -1.43 -37.15 16 6 S 2.71 119.11 5.05 -56.49 -0.29 118.82 16 7 O -0.99 -49.52 15.00 -128.00 -1.92 -51.44 16 8 O -1.01 -45.45 16.16 -128.00 -2.07 -47.51 16 9 C -0.77 -35.71 5.55 22.73 0.13 -35.58 16 10 C -0.02 -0.90 9.53 22.22 0.21 -0.69 16 11 C -0.24 -9.47 10.05 22.46 0.23 -9.24 16 12 C -0.08 -3.26 10.02 22.22 0.22 -3.03 16 13 C -0.17 -8.39 8.63 22.73 0.20 -8.20 16 14 C 0.18 8.65 4.36 -21.29 -0.09 8.56 16 15 C -0.49 -23.85 6.94 23.46 0.16 -23.69 16 16 H 0.11 4.74 2.08 -2.91 -0.01 4.74 16 17 C 0.04 2.06 5.41 85.26 0.46 2.52 16 18 N -0.83 -41.25 10.92 21.83 0.24 -41.01 16 19 Si 0.95 36.52 29.56 68.60 2.03 38.55 16 20 H -0.24 -8.37 7.11 99.48 0.71 -7.66 16 21 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 22 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 23 C 0.10 2.91 5.25 86.50 0.45 3.37 16 24 C 0.10 2.79 1.12 -10.55 -0.01 2.77 16 25 C -0.18 -5.65 8.10 71.98 0.58 -5.07 16 26 C -0.13 -2.59 8.85 71.98 0.64 -1.95 16 27 O -0.37 -10.77 9.87 -148.98 -1.47 -12.24 16 28 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.07 1.78 8.14 -2.39 -0.02 1.77 16 31 H 0.09 3.53 5.11 -2.39 -0.01 3.52 16 32 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.12 4.75 7.33 -2.91 -0.02 4.73 16 34 H 0.13 4.24 8.06 -2.91 -0.02 4.21 16 35 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 36 H 0.11 5.61 6.52 -2.91 -0.02 5.59 16 37 H 0.29 13.21 8.30 -92.71 -0.77 12.44 16 38 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.09 2.64 7.55 -2.39 -0.02 2.62 16 40 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.06 2.11 4.41 -2.39 -0.01 2.10 16 43 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -61.80 355.66 0.47 -61.33 By element: Atomic # 1 Polarization: 37.27 SS G_CDS: 1.01 Total: 38.28 kcal Atomic # 6 Polarization: -72.00 SS G_CDS: 4.37 Total: -67.63 kcal Atomic # 7 Polarization: -76.97 SS G_CDS: -1.19 Total: -78.16 kcal Atomic # 8 Polarization: -105.73 SS G_CDS: -5.46 Total: -111.19 kcal Atomic # 14 Polarization: 36.52 SS G_CDS: 2.03 Total: 38.55 kcal Atomic # 16 Polarization: 119.11 SS G_CDS: -0.29 Total: 118.82 kcal Total: -61.80 0.47 -61.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601319387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.947 kcal (2) G-P(sol) polarization free energy of solvation -61.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds