Wall clock time and date at job start Sat Apr 11 2020 05:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.68155 * 2 1 4 4 N 1.47154 * 109.67827 * 239.48484 * 2 1 3 5 5 S 1.65607 * 120.98409 * 9.72305 * 4 2 1 6 6 O 1.42096 * 106.40058 * 168.34331 * 5 4 2 7 7 O 1.42095 * 106.40135 * 35.42149 * 5 4 2 8 8 C 1.76195 * 107.21469 * 281.88146 * 5 4 2 9 9 C 1.37640 * 120.12769 * 114.43902 * 8 5 4 10 10 C 1.38611 * 120.25306 * 179.97438 * 9 8 5 11 11 C 1.38656 * 120.50006 * 0.02562 * 10 9 8 12 12 C 1.37601 * 120.24546 * 359.67228 * 11 10 9 13 13 C 1.40697 * 120.13102 * 294.41680 * 8 5 4 14 14 C 1.41390 * 120.24309 * 0.02562 * 13 8 5 15 15 H 1.08006 * 119.99871 * 41.31232 * 14 13 8 16 16 C 1.39947 * 120.00273 * 221.30888 * 14 13 8 17 17 N 1.30825 * 119.99728 * 16.60862 * 16 14 13 18 18 Si 1.86796 * 120.00211 * 196.60550 * 16 14 13 19 19 H 1.48510 * 109.46868 * 90.00314 * 18 16 14 20 20 H 1.48496 * 109.47400 * 330.00528 * 18 16 14 21 21 H 1.48499 * 109.47391 * 209.99825 * 18 16 14 22 22 C 1.47155 * 118.03432 * 189.99421 * 4 2 1 23 23 C 1.52874 * 108.60882 * 50.22622 * 22 4 2 24 24 O 1.42960 * 109.29997 * 307.94087 * 23 22 4 25 25 C 1.42957 * 114.16890 * 62.44161 * 24 23 22 26 26 C 1.53000 * 109.51234 * 177.49552 * 25 24 23 27 27 C 1.53004 * 109.55110 * 57.37374 * 25 24 23 28 28 H 1.08996 * 109.47276 * 167.50693 * 1 2 3 29 29 H 1.09000 * 109.47268 * 287.50922 * 1 2 3 30 30 H 1.09005 * 109.47101 * 47.50568 * 1 2 3 31 31 H 1.08005 * 119.87424 * 0.02562 * 9 8 5 32 32 H 1.07998 * 119.75170 * 179.97438 * 10 9 8 33 33 H 1.07997 * 119.88148 * 179.97438 * 11 10 9 34 34 H 1.08003 * 120.12896 * 180.30363 * 12 11 10 35 35 H 0.96998 * 120.00322 * 3.93452 * 17 16 14 36 36 H 1.08996 * 109.68127 * 170.01401 * 22 4 2 37 37 H 1.09003 * 109.68280 * 290.55931 * 22 4 2 38 38 H 1.08995 * 109.58279 * 187.92352 * 23 22 4 39 39 H 1.09007 * 109.40575 * 67.84087 * 23 22 4 40 40 H 1.09002 * 109.47345 * 179.74703 * 26 25 24 41 41 H 1.08992 * 109.47464 * 299.75146 * 26 25 24 42 42 H 1.09005 * 109.46847 * 59.75366 * 26 25 24 43 43 H 1.09002 * 109.47116 * 295.62843 * 27 25 24 44 44 H 1.09000 * 109.47239 * 55.63213 * 27 25 24 45 45 H 1.09002 * 109.46817 * 175.63219 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0263 0.0000 4 7 2.0255 -0.7036 -1.1937 5 16 0.9950 -1.1439 -2.4130 6 8 1.8123 -1.5401 -3.5057 7 8 0.0195 -0.1147 -2.5051 8 6 0.1430 -2.5906 -1.8786 9 6 -1.2156 -2.5516 -1.6611 10 6 -1.8885 -3.6884 -1.2413 11 6 -1.2033 -4.8760 -1.0351 12 6 0.1540 -4.9398 -1.2523 13 6 0.8486 -3.7904 -1.6731 14 6 2.2443 -3.8424 -1.8932 15 1 2.8726 -3.0249 -1.5714 16 6 2.8117 -4.9531 -2.5280 17 7 2.0535 -5.7798 -3.2012 18 14 4.6516 -5.2551 -2.4141 19 1 4.9422 -6.0975 -1.2261 20 1 5.3594 -3.9562 -2.2849 21 1 5.1157 -5.9521 -3.6405 22 6 3.4629 -1.0097 -1.2692 23 6 3.8859 -1.6896 0.0331 24 8 3.4635 -0.8917 1.1415 25 6 2.0463 -0.7339 1.2428 26 6 1.7109 0.0809 2.4936 27 6 1.3833 -2.1097 1.3362 28 1 -0.3633 -1.0033 -0.2223 29 1 -0.3634 0.3092 0.9800 30 1 -0.3633 0.6942 -0.7578 31 1 -1.7595 -1.6320 -1.8190 32 1 -2.9545 -3.6485 -1.0727 33 1 -1.7375 -5.7555 -0.7075 34 1 0.6851 -5.8671 -1.0958 35 1 1.1078 -5.5926 -3.3085 36 1 3.6523 -1.6779 -2.1092 37 1 4.0285 -0.0870 -1.3988 38 1 4.9704 -1.7966 0.0538 39 1 3.4216 -2.6739 0.0952 40 1 0.6305 0.2046 2.5678 41 1 2.0783 -0.4415 3.3769 42 1 2.1850 1.0602 2.4272 43 1 1.5559 -2.6597 0.4111 44 1 1.8103 -2.6628 2.1728 45 1 0.3114 -1.9867 1.4912 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601371443.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:56 Heat of formation + Delta-G solvation = -88.672590 kcal Electronic energy + Delta-G solvation = -31140.859343 eV Core-core repulsion = 27250.564545 eV Total energy + Delta-G solvation = -3890.294798 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.89842 -37.94954 -36.67968 -35.00944 -34.77510 -34.19009 -33.76247 -30.36117 -29.77691 -29.20816 -27.78757 -27.05119 -25.32573 -23.74682 -22.43286 -21.88551 -21.31860 -19.25879 -18.25755 -18.00729 -16.98928 -16.58118 -16.12209 -15.76478 -15.15785 -14.90805 -14.47799 -14.43580 -14.23791 -14.09723 -13.65728 -13.42433 -13.02897 -12.77509 -12.68177 -12.43615 -12.16008 -12.01423 -11.91139 -11.72157 -11.50297 -11.42360 -11.26751 -11.19426 -11.15851 -11.07595 -10.98687 -10.80647 -10.62873 -10.53708 -10.46115 -9.93994 -9.79503 -9.59942 -9.34985 -9.25052 -8.34240 -8.21077 -7.78232 -7.38790 -4.87165 1.34069 2.09724 2.53957 3.05294 3.12137 3.21481 3.62813 3.88335 3.97885 4.35867 4.58908 4.88799 4.93839 5.02177 5.10566 5.26573 5.34627 5.47051 5.50023 5.60783 5.66001 5.77173 5.80726 5.85980 5.86798 5.92732 5.96457 6.09505 6.15758 6.19032 6.20962 6.23920 6.34093 6.43475 6.49390 6.73448 6.73960 6.79182 7.03769 7.05233 7.20290 7.32275 7.47732 7.48930 7.55981 7.77594 7.90477 8.27878 8.57569 9.90646 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010759 B = 0.007802 C = 0.006294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.916353 B = 3587.856010 C = 4447.530983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.143 3.857 3 H 0.076 0.924 4 N -0.997 5.997 5 S 2.701 3.299 6 O -0.959 6.959 7 O -0.991 6.991 8 C -0.765 4.765 9 C 0.004 3.996 10 C -0.248 4.248 11 C -0.059 4.059 12 C -0.197 4.197 13 C 0.177 3.823 14 C -0.537 4.537 15 H 0.100 0.900 16 C 0.047 3.953 17 N -0.789 5.789 18 Si 1.059 2.941 19 H -0.272 1.272 20 H -0.269 1.269 21 H -0.271 1.271 22 C 0.083 3.917 23 C 0.035 3.965 24 O -0.374 6.374 25 C 0.105 3.895 26 C -0.136 4.136 27 C -0.187 4.187 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.299 0.701 36 H 0.115 0.885 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.088 0.912 44 H 0.056 0.944 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.312 6.229 8.177 10.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C 0.036 3.964 3 H 0.094 0.906 4 N -0.833 5.833 5 S 2.800 3.200 6 O -0.950 6.950 7 O -0.982 6.982 8 C -0.859 4.859 9 C -0.016 4.016 10 C -0.269 4.269 11 C -0.078 4.078 12 C -0.216 4.216 13 C 0.173 3.827 14 C -0.565 4.565 15 H 0.118 0.882 16 C -0.176 4.176 17 N -0.412 5.412 18 Si 0.882 3.118 19 H -0.198 1.198 20 H -0.193 1.193 21 H -0.196 1.196 22 C -0.043 4.043 23 C -0.042 4.042 24 O -0.293 6.293 25 C 0.064 3.936 26 C -0.194 4.194 27 C -0.244 4.244 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.121 0.879 31 H 0.129 0.871 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.125 0.875 35 H 0.113 0.887 36 H 0.133 0.867 37 H 0.087 0.913 38 H 0.117 0.883 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.106 0.894 44 H 0.075 0.925 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.547 5.702 6.988 9.372 hybrid contribution -1.759 0.148 0.761 1.922 sum 0.789 5.851 7.749 9.742 Atomic orbital electron populations 1.22958 0.93442 1.05776 1.04614 1.21411 0.94715 0.95536 0.84721 0.90561 1.58029 1.17821 1.72144 1.35323 1.01232 0.72510 0.73679 0.72589 1.93512 1.68376 1.83698 1.49405 1.93434 1.61259 1.57123 1.86388 1.30212 1.04506 1.18630 1.32585 1.20353 0.92400 0.97190 0.91614 1.20521 0.98255 0.94169 1.13925 1.20887 0.94523 0.96271 0.96127 1.21382 0.94056 0.99306 1.06898 1.17005 0.92471 0.89235 0.84032 1.21199 0.92622 1.07521 1.35174 0.88249 1.26897 1.08229 0.90960 0.91492 1.70403 1.10497 1.34925 1.25351 0.83713 0.72139 0.77730 0.78235 1.19751 1.19329 1.19611 1.22078 0.80671 1.01179 1.00338 1.23098 1.00208 0.95443 0.85478 1.87889 1.21365 1.72122 1.47971 1.21795 0.81749 0.95598 0.94440 1.21781 1.01640 0.99821 0.96156 1.22563 1.00922 0.96682 1.04267 0.90355 0.90799 0.87882 0.87083 0.88345 0.88496 0.87451 0.88694 0.86710 0.91340 0.88346 0.90283 0.90886 0.91794 0.91995 0.89371 0.92471 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.28 6.76 37.16 0.25 -3.03 16 2 C 0.14 2.27 2.81 -67.42 -0.19 2.08 16 3 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 4 N -1.00 -18.26 2.66 -106.27 -0.28 -18.55 16 5 S 2.70 58.48 4.47 -107.50 -0.48 58.00 16 6 O -0.96 -23.73 15.24 -57.17 -0.87 -24.60 16 7 O -0.99 -21.62 13.38 -57.17 -0.77 -22.38 16 8 C -0.77 -17.03 4.55 -38.87 -0.18 -17.21 16 9 C 0.00 0.09 7.74 -39.66 -0.31 -0.22 16 10 C -0.25 -4.95 10.05 -39.29 -0.39 -5.34 16 11 C -0.06 -1.21 10.02 -39.66 -0.40 -1.61 16 12 C -0.20 -4.44 7.93 -38.87 -0.31 -4.75 16 13 C 0.18 4.13 3.57 -106.83 -0.38 3.74 16 14 C -0.54 -12.51 6.34 -37.74 -0.24 -12.75 16 15 H 0.10 2.13 1.59 -52.48 -0.08 2.05 16 16 C 0.05 1.11 5.09 -17.34 -0.09 1.02 16 17 N -0.79 -19.97 12.86 55.55 0.71 -19.25 16 18 Si 1.06 20.22 29.96 -169.99 -5.09 15.12 16 19 H -0.27 -4.90 7.11 56.52 0.40 -4.49 16 20 H -0.27 -4.65 7.11 56.52 0.40 -4.25 16 21 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 22 C 0.08 1.41 5.46 -3.75 -0.02 1.39 16 23 C 0.04 0.56 6.22 37.09 0.23 0.80 16 24 O -0.37 -5.96 10.23 -35.23 -0.36 -6.32 16 25 C 0.10 1.57 0.89 -90.47 -0.08 1.49 16 26 C -0.14 -1.62 8.68 37.16 0.32 -1.30 16 27 C -0.19 -3.04 7.30 37.16 0.27 -2.77 16 28 H 0.08 1.34 3.27 -51.93 -0.17 1.17 16 29 H 0.07 0.92 6.30 -51.93 -0.33 0.59 16 30 H 0.10 1.71 6.08 -51.93 -0.32 1.40 16 31 H 0.11 2.15 7.27 -52.48 -0.38 1.77 16 32 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 34 H 0.11 2.47 7.38 -52.48 -0.39 2.08 16 35 H 0.30 7.82 6.61 -40.82 -0.27 7.55 16 36 H 0.12 2.15 5.42 -51.93 -0.28 1.87 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.08 1.38 4.72 -51.92 -0.25 1.13 16 40 H 0.07 0.76 6.49 -51.93 -0.34 0.42 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 1.65 3.55 -51.93 -0.18 1.46 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.06 1.02 6.91 -51.93 -0.36 0.66 16 LS Contribution 334.07 15.07 5.03 5.03 Total: -1.00 -27.91 334.07 -9.13 -37.04 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -5.52 Total: 14.34 kcal Atomic # 6 Polarization: -36.92 SS G_CDS: -1.51 Total: -38.43 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.43 Total: -37.80 kcal Atomic # 8 Polarization: -51.31 SS G_CDS: -2.00 Total: -53.31 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.09 Total: 15.12 kcal Atomic # 16 Polarization: 58.48 SS G_CDS: -0.48 Total: 58.00 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.91 -9.13 -37.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601371443.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.628 kcal (2) G-P(sol) polarization free energy of solvation -27.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds