Wall clock time and date at job start Sat Apr 11 2020 05:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.68155 * 2 1 4 4 N 1.47154 * 109.67827 * 239.48484 * 2 1 3 5 5 S 1.65607 * 120.98409 * 9.72305 * 4 2 1 6 6 O 1.42096 * 106.40058 * 168.34331 * 5 4 2 7 7 O 1.42095 * 106.40135 * 35.42149 * 5 4 2 8 8 C 1.76195 * 107.21469 * 281.88146 * 5 4 2 9 9 C 1.37640 * 120.12769 * 114.43902 * 8 5 4 10 10 C 1.38611 * 120.25306 * 179.97438 * 9 8 5 11 11 C 1.38656 * 120.50006 * 0.02562 * 10 9 8 12 12 C 1.37601 * 120.24546 * 359.67228 * 11 10 9 13 13 C 1.40697 * 120.13102 * 294.41680 * 8 5 4 14 14 C 1.41390 * 120.24309 * 0.02562 * 13 8 5 15 15 H 1.08006 * 119.99871 * 41.31232 * 14 13 8 16 16 C 1.39947 * 120.00273 * 221.30888 * 14 13 8 17 17 N 1.30825 * 119.99728 * 16.60862 * 16 14 13 18 18 Si 1.86796 * 120.00211 * 196.60550 * 16 14 13 19 19 H 1.48510 * 109.46868 * 90.00314 * 18 16 14 20 20 H 1.48496 * 109.47400 * 330.00528 * 18 16 14 21 21 H 1.48499 * 109.47391 * 209.99825 * 18 16 14 22 22 C 1.47155 * 118.03432 * 189.99421 * 4 2 1 23 23 C 1.52874 * 108.60882 * 50.22622 * 22 4 2 24 24 O 1.42960 * 109.29997 * 307.94087 * 23 22 4 25 25 C 1.42957 * 114.16890 * 62.44161 * 24 23 22 26 26 C 1.53000 * 109.51234 * 177.49552 * 25 24 23 27 27 C 1.53004 * 109.55110 * 57.37374 * 25 24 23 28 28 H 1.08996 * 109.47276 * 167.50693 * 1 2 3 29 29 H 1.09000 * 109.47268 * 287.50922 * 1 2 3 30 30 H 1.09005 * 109.47101 * 47.50568 * 1 2 3 31 31 H 1.08005 * 119.87424 * 0.02562 * 9 8 5 32 32 H 1.07998 * 119.75170 * 179.97438 * 10 9 8 33 33 H 1.07997 * 119.88148 * 179.97438 * 11 10 9 34 34 H 1.08003 * 120.12896 * 180.30363 * 12 11 10 35 35 H 0.96998 * 120.00322 * 3.93452 * 17 16 14 36 36 H 1.08996 * 109.68127 * 170.01401 * 22 4 2 37 37 H 1.09003 * 109.68280 * 290.55931 * 22 4 2 38 38 H 1.08995 * 109.58279 * 187.92352 * 23 22 4 39 39 H 1.09007 * 109.40575 * 67.84087 * 23 22 4 40 40 H 1.09002 * 109.47345 * 179.74703 * 26 25 24 41 41 H 1.08992 * 109.47464 * 299.75146 * 26 25 24 42 42 H 1.09005 * 109.46847 * 59.75366 * 26 25 24 43 43 H 1.09002 * 109.47116 * 295.62843 * 27 25 24 44 44 H 1.09000 * 109.47239 * 55.63213 * 27 25 24 45 45 H 1.09002 * 109.46817 * 175.63219 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0263 0.0000 4 7 2.0255 -0.7036 -1.1937 5 16 0.9950 -1.1439 -2.4130 6 8 1.8123 -1.5401 -3.5057 7 8 0.0195 -0.1147 -2.5051 8 6 0.1430 -2.5906 -1.8786 9 6 -1.2156 -2.5516 -1.6611 10 6 -1.8885 -3.6884 -1.2413 11 6 -1.2033 -4.8760 -1.0351 12 6 0.1540 -4.9398 -1.2523 13 6 0.8486 -3.7904 -1.6731 14 6 2.2443 -3.8424 -1.8932 15 1 2.8726 -3.0249 -1.5714 16 6 2.8117 -4.9531 -2.5280 17 7 2.0535 -5.7798 -3.2012 18 14 4.6516 -5.2551 -2.4141 19 1 4.9422 -6.0975 -1.2261 20 1 5.3594 -3.9562 -2.2849 21 1 5.1157 -5.9521 -3.6405 22 6 3.4629 -1.0097 -1.2692 23 6 3.8859 -1.6896 0.0331 24 8 3.4635 -0.8917 1.1415 25 6 2.0463 -0.7339 1.2428 26 6 1.7109 0.0809 2.4936 27 6 1.3833 -2.1097 1.3362 28 1 -0.3633 -1.0033 -0.2223 29 1 -0.3634 0.3092 0.9800 30 1 -0.3633 0.6942 -0.7578 31 1 -1.7595 -1.6320 -1.8190 32 1 -2.9545 -3.6485 -1.0727 33 1 -1.7375 -5.7555 -0.7075 34 1 0.6851 -5.8671 -1.0958 35 1 1.1078 -5.5926 -3.3085 36 1 3.6523 -1.6779 -2.1092 37 1 4.0285 -0.0870 -1.3988 38 1 4.9704 -1.7966 0.0538 39 1 3.4216 -2.6739 0.0952 40 1 0.6305 0.2046 2.5678 41 1 2.0783 -0.4415 3.3769 42 1 2.1850 1.0602 2.4272 43 1 1.5559 -2.6597 0.4111 44 1 1.8103 -2.6628 2.1728 45 1 0.3114 -1.9867 1.4912 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601371443.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:56 Heat of formation + Delta-G solvation = -106.094798 kcal Electronic energy + Delta-G solvation = -31141.614826 eV Core-core repulsion = 27250.564545 eV Total energy + Delta-G solvation = -3891.050281 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.15714 -39.62085 -38.39001 -36.74983 -36.14524 -35.80480 -35.11629 -32.04379 -31.41189 -30.50132 -29.08361 -28.18807 -27.04071 -25.01109 -23.76720 -23.49439 -23.02356 -20.65548 -19.91499 -19.56175 -18.50846 -17.92854 -17.69602 -17.21811 -16.66070 -16.36146 -15.93394 -15.79206 -15.69269 -15.59493 -15.25292 -15.07872 -14.41453 -14.28201 -14.06668 -13.78155 -13.45849 -13.37589 -13.28855 -13.04988 -13.00988 -12.97722 -12.86102 -12.75233 -12.59798 -12.53133 -12.26371 -12.22662 -12.12591 -11.97015 -11.82142 -11.56246 -11.13573 -11.04818 -10.96292 -10.89145 -9.95815 -9.61987 -9.49100 -9.17644 -6.64992 -0.30698 0.39061 0.84737 1.49077 1.61156 1.72209 2.09654 2.32932 2.66115 2.81419 2.92404 3.27526 3.54891 3.70360 3.72967 4.01576 4.08108 4.19241 4.22006 4.25548 4.32553 4.39005 4.42238 4.59020 4.63516 4.66284 4.76218 4.78480 4.84990 4.90794 4.94707 5.06159 5.07327 5.10703 5.12627 5.23945 5.36050 5.46175 5.50710 5.54576 5.56748 5.72260 5.78375 5.82694 6.03563 6.18871 6.28645 6.56526 6.85852 8.08076 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010759 B = 0.007802 C = 0.006294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.916353 B = 3587.856010 C = 4447.530983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.136 3.864 3 H 0.095 0.905 4 N -0.994 5.994 5 S 2.709 3.291 6 O -0.998 6.998 7 O -0.998 6.998 8 C -0.772 4.772 9 C -0.006 4.006 10 C -0.242 4.242 11 C -0.057 4.057 12 C -0.218 4.218 13 C 0.166 3.834 14 C -0.559 4.559 15 H 0.115 0.885 16 C 0.010 3.990 17 N -0.825 5.825 18 Si 1.088 2.912 19 H -0.255 1.255 20 H -0.241 1.241 21 H -0.280 1.280 22 C 0.076 3.924 23 C 0.037 3.963 24 O -0.375 6.375 25 C 0.105 3.895 26 C -0.133 4.133 27 C -0.187 4.187 28 H 0.061 0.939 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.125 0.875 32 H 0.132 0.868 33 H 0.125 0.875 34 H 0.092 0.908 35 H 0.281 0.719 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.127 0.873 39 H 0.060 0.940 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.314 7.851 10.365 13.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C 0.030 3.970 3 H 0.112 0.888 4 N -0.832 5.832 5 S 2.809 3.191 6 O -0.989 6.989 7 O -0.988 6.988 8 C -0.866 4.866 9 C -0.025 4.025 10 C -0.262 4.262 11 C -0.076 4.076 12 C -0.238 4.238 13 C 0.161 3.839 14 C -0.587 4.587 15 H 0.132 0.868 16 C -0.206 4.206 17 N -0.449 5.449 18 Si 0.905 3.095 19 H -0.179 1.179 20 H -0.164 1.164 21 H -0.205 1.205 22 C -0.049 4.049 23 C -0.041 4.041 24 O -0.294 6.294 25 C 0.064 3.936 26 C -0.190 4.190 27 C -0.244 4.244 28 H 0.079 0.921 29 H 0.126 0.874 30 H 0.109 0.891 31 H 0.143 0.857 32 H 0.150 0.850 33 H 0.143 0.857 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.144 0.856 39 H 0.079 0.921 40 H 0.108 0.892 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.531 7.336 9.191 12.029 hybrid contribution -1.921 -0.261 0.150 1.945 sum 0.610 7.074 9.341 11.733 Atomic orbital electron populations 1.22957 0.93233 1.04432 1.06237 1.21727 0.95060 0.96243 0.83930 0.88757 1.57779 1.17883 1.72066 1.35504 1.00779 0.72362 0.73370 0.72627 1.93461 1.69318 1.84268 1.51819 1.93426 1.61633 1.56945 1.86810 1.30371 1.05384 1.18741 1.32065 1.20634 0.92064 0.98272 0.91546 1.20925 0.99860 0.93313 1.12075 1.21227 0.93815 0.97658 0.94875 1.21403 0.95238 0.98803 1.08381 1.17209 0.92929 0.89768 0.83951 1.21478 0.93174 1.08287 1.35793 0.86759 1.28148 1.11312 0.90715 0.90442 1.70528 1.09604 1.36421 1.28313 0.83438 0.68382 0.79220 0.78466 1.17890 1.16375 1.20477 1.22246 0.80146 1.02167 1.00378 1.23112 1.01702 0.94345 0.84905 1.87901 1.21910 1.71870 1.47673 1.21927 0.81166 0.95116 0.95364 1.21810 1.02927 0.99831 0.94474 1.22542 1.01413 0.97431 1.03008 0.92058 0.87407 0.89056 0.85692 0.85023 0.85694 0.88948 0.90667 0.88747 0.88794 0.85573 0.92142 0.89220 0.91177 0.90749 0.91969 0.92154 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -6.09 6.76 71.98 0.49 -5.60 16 2 C 0.14 4.00 2.81 44.96 0.13 4.13 16 3 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 4 N -0.99 -35.38 2.66 -490.13 -1.30 -36.68 16 5 S 2.71 117.60 4.47 -56.49 -0.25 117.35 16 6 O -1.00 -50.60 15.24 -128.00 -1.95 -52.55 16 7 O -1.00 -43.05 13.38 -128.00 -1.71 -44.77 16 8 C -0.77 -34.54 4.55 22.73 0.10 -34.44 16 9 C -0.01 -0.23 7.74 22.22 0.17 -0.05 16 10 C -0.24 -9.18 10.05 22.46 0.23 -8.96 16 11 C -0.06 -2.29 10.02 22.22 0.22 -2.06 16 12 C -0.22 -10.08 7.93 22.73 0.18 -9.90 16 13 C 0.17 7.90 3.57 -21.29 -0.08 7.82 16 14 C -0.56 -26.74 6.34 23.46 0.15 -26.60 16 15 H 0.12 4.97 1.59 -2.91 0.00 4.97 16 16 C 0.01 0.48 5.09 85.26 0.43 0.91 16 17 N -0.83 -43.76 12.86 21.83 0.28 -43.48 16 18 Si 1.09 40.91 29.96 68.60 2.06 42.97 16 19 H -0.25 -8.76 7.11 99.48 0.71 -8.05 16 20 H -0.24 -7.83 7.11 99.48 0.71 -7.13 16 21 H -0.28 -10.78 7.11 99.48 0.71 -10.08 16 22 C 0.08 2.49 5.46 86.21 0.47 2.96 16 23 C 0.04 1.12 6.22 71.94 0.45 1.57 16 24 O -0.37 -10.92 10.23 -148.98 -1.52 -12.44 16 25 C 0.10 2.87 0.89 -10.70 -0.01 2.86 16 26 C -0.13 -2.65 8.68 71.98 0.62 -2.02 16 27 C -0.19 -5.78 7.30 71.98 0.53 -5.26 16 28 H 0.06 2.00 3.27 -2.39 -0.01 1.99 16 29 H 0.11 2.30 6.30 -2.39 -0.02 2.28 16 30 H 0.09 2.87 6.08 -2.38 -0.01 2.85 16 31 H 0.13 4.68 7.27 -2.91 -0.02 4.66 16 32 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 33 H 0.13 4.21 8.06 -2.91 -0.02 4.18 16 34 H 0.09 4.46 7.38 -2.91 -0.02 4.44 16 35 H 0.28 15.57 6.61 -92.71 -0.61 14.95 16 36 H 0.09 3.53 5.42 -2.39 -0.01 3.52 16 37 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.13 3.04 8.14 -2.39 -0.02 3.02 16 39 H 0.06 2.07 4.72 -2.38 -0.01 2.06 16 40 H 0.09 1.48 6.49 -2.39 -0.02 1.46 16 41 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 43 H 0.06 2.30 3.55 -2.39 -0.01 2.29 16 44 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.07 2.05 6.91 -2.39 -0.02 2.03 16 Total: -1.00 -62.20 334.07 0.87 -61.33 By element: Atomic # 1 Polarization: 41.72 SS G_CDS: 1.20 Total: 42.92 kcal Atomic # 6 Polarization: -78.73 SS G_CDS: 4.08 Total: -74.64 kcal Atomic # 7 Polarization: -79.14 SS G_CDS: -1.02 Total: -80.16 kcal Atomic # 8 Polarization: -104.58 SS G_CDS: -5.19 Total: -109.76 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.06 Total: 42.97 kcal Atomic # 16 Polarization: 117.60 SS G_CDS: -0.25 Total: 117.35 kcal Total: -62.20 0.87 -61.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601371443.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.765 kcal (2) G-P(sol) polarization free energy of solvation -62.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds