Wall clock time and date at job start Sat Apr 11 2020 05:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.49148 * 2 1 4 4 C 1.53094 * 109.47958 * 120.02574 * 2 1 3 5 5 C 1.53176 * 109.16069 * 62.37570 * 4 2 1 6 6 N 1.46502 * 109.54473 * 176.84475 * 5 4 2 7 7 S 1.65600 * 120.00064 * 142.60809 * 6 5 4 8 8 O 1.42100 * 106.40382 * 310.96872 * 7 6 5 9 9 O 1.42099 * 106.40230 * 178.04120 * 7 6 5 10 10 C 1.76205 * 107.21652 * 64.50522 * 7 6 5 11 11 C 1.37636 * 120.13080 * 243.41153 * 10 7 6 12 12 C 1.38607 * 120.24916 * 179.97438 * 11 10 7 13 13 C 1.38651 * 120.50427 * 359.97438 * 12 11 10 14 14 C 1.37597 * 120.24761 * 359.73918 * 13 12 11 15 15 C 1.40702 * 120.12576 * 63.38551 * 10 7 6 16 16 C 1.41391 * 120.24503 * 0.02562 * 15 10 7 17 17 H 1.08000 * 120.00244 * 331.55910 * 16 15 10 18 18 C 1.39945 * 120.00026 * 151.55833 * 16 15 10 19 19 N 1.30825 * 120.00212 * 347.82265 * 18 16 15 20 20 Si 1.86803 * 120.00166 * 167.82419 * 18 16 15 21 21 H 1.48501 * 109.46966 * 5.01028 * 20 18 16 22 22 H 1.48506 * 109.47137 * 125.00912 * 20 18 16 23 23 H 1.48496 * 109.47248 * 245.01018 * 20 18 16 24 24 C 1.53180 * 109.11061 * 56.93872 * 5 4 2 25 25 C 1.53108 * 109.15323 * 303.14929 * 24 5 4 26 26 H 1.09006 * 109.41805 * 297.48958 * 25 24 5 27 27 C 1.52998 * 109.48397 * 177.50330 * 25 24 5 28 28 O 1.42898 * 109.48263 * 239.96949 * 2 1 3 29 29 H 1.09003 * 109.47442 * 304.50539 * 1 2 3 30 30 H 1.09002 * 109.47457 * 64.50603 * 1 2 3 31 31 H 1.09008 * 109.47547 * 184.50379 * 1 2 3 32 32 H 1.08999 * 109.52324 * 302.47184 * 4 2 1 33 33 H 1.08998 * 109.52408 * 182.28200 * 4 2 1 34 34 H 1.08998 * 109.54357 * 297.02404 * 5 4 2 35 35 H 0.96993 * 119.99956 * 322.61607 * 6 5 4 36 36 H 1.08006 * 119.87445 * 359.97438 * 11 10 7 37 37 H 1.07999 * 119.74900 * 179.97438 * 12 11 10 38 38 H 1.08000 * 119.88307 * 180.02562 * 13 12 11 39 39 H 1.08010 * 120.13162 * 180.27444 * 14 13 12 40 40 H 0.97000 * 120.00357 * 179.97438 * 19 18 16 41 41 H 1.08996 * 109.52485 * 62.96768 * 24 5 4 42 42 H 1.09005 * 109.52383 * 183.15997 * 24 5 4 43 43 H 1.09006 * 109.47068 * 299.97029 * 27 25 24 44 44 H 1.09001 * 109.47175 * 59.96879 * 27 25 24 45 45 H 1.08996 * 109.47262 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0404 -0.7222 1.2496 5 6 1.5756 -2.1813 1.2122 6 7 2.1224 -2.8996 2.3660 7 16 1.2091 -4.0465 3.1361 8 8 -0.0592 -3.4533 3.3784 9 8 2.0258 -4.5836 4.1675 10 6 0.9356 -5.3536 1.9865 11 6 -0.3416 -5.6485 1.5668 12 6 -0.5596 -6.6758 0.6622 13 6 0.5035 -7.4171 0.1695 14 6 1.7894 -7.1361 0.5707 15 6 2.0220 -6.0995 1.4937 16 6 3.3385 -5.8056 1.9177 17 1 3.5971 -4.8014 2.2196 18 6 4.3064 -6.8159 1.9461 19 7 3.9496 -8.0676 1.8141 20 14 6.1081 -6.3772 2.1727 21 1 6.2351 -4.9183 2.4188 22 1 6.6575 -7.1247 3.3324 23 1 6.8638 -6.7401 0.9469 24 6 2.0746 -2.8336 -0.0808 25 6 1.5645 -2.0284 -1.2790 26 1 0.4749 -2.0550 -1.2960 27 6 2.1099 -2.6372 -2.5724 28 8 2.0065 -0.6742 -1.1663 29 1 -0.3634 0.5822 0.8469 30 1 -0.3634 0.4423 -0.9276 31 1 -0.3634 -1.0245 0.0807 32 1 1.6419 -0.2357 2.1399 33 1 3.1297 -0.6874 1.2711 34 1 0.4867 -2.2179 1.2424 35 1 3.0192 -2.7033 2.6790 36 1 -1.1772 -5.0773 1.9438 37 1 -1.5651 -6.9006 0.3386 38 1 0.3223 -8.2151 -0.5353 39 1 2.6166 -7.7118 0.1823 40 1 4.6205 -8.7678 1.8334 41 1 3.1645 -2.8427 -0.0871 42 1 1.7005 -3.8556 -0.1411 43 1 3.1995 -2.6110 -2.5551 44 1 1.7726 -3.6702 -2.6582 45 1 1.7462 -2.0642 -3.4253 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601383986.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:57 Heat of formation + Delta-G solvation = -137.242947 kcal Electronic energy + Delta-G solvation = -29556.889779 eV Core-core repulsion = 25664.488813 eV Total energy + Delta-G solvation = -3892.400967 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.92365 -39.37947 -38.05835 -36.69288 -36.63203 -35.65485 -34.24754 -32.31140 -32.00194 -31.34160 -29.48182 -27.57817 -27.33370 -23.95449 -23.39405 -23.09729 -22.88927 -20.69420 -20.04111 -19.48888 -18.52838 -18.06045 -17.45637 -17.15944 -17.06721 -16.40010 -16.04815 -15.82088 -15.65953 -15.12815 -15.00683 -14.98687 -14.75848 -14.47561 -13.79515 -13.71263 -13.49524 -13.30282 -13.04548 -13.01873 -12.99914 -12.90679 -12.86753 -12.82739 -12.75157 -12.58415 -12.48430 -12.34433 -12.11984 -12.04977 -11.89592 -11.64132 -11.20777 -11.14980 -10.94236 -10.42994 -10.21916 -9.80409 -9.41616 -8.79911 -6.60225 -0.18115 0.54301 0.97811 1.35799 1.48766 1.50037 2.14358 2.29542 2.63391 2.87597 2.97642 3.47481 3.66244 3.79692 3.86217 3.97417 4.04537 4.18710 4.23817 4.34809 4.37780 4.46139 4.51148 4.56894 4.65237 4.72650 4.74626 4.85128 4.94410 4.99145 5.06429 5.09088 5.15513 5.17990 5.24927 5.30245 5.32151 5.38972 5.46921 5.52729 5.72140 5.83302 6.02099 6.09343 6.20351 6.38137 6.48844 6.68868 6.84708 8.16558 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010559 B = 0.005467 C = 0.005163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.129792 B = 5120.630925 C = 5422.079521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.089 3.911 3 H 0.128 0.872 4 C -0.150 4.150 5 C 0.151 3.849 6 N -1.104 6.104 7 S 2.714 3.286 8 O -1.009 7.009 9 O -1.002 7.002 10 C -0.787 4.787 11 C -0.016 4.016 12 C -0.248 4.248 13 C -0.074 4.074 14 C -0.183 4.183 15 C 0.171 3.829 16 C -0.473 4.473 17 H 0.093 0.907 18 C 0.041 3.959 19 N -0.808 5.808 20 Si 0.971 3.029 21 H -0.249 1.249 22 H -0.270 1.270 23 H -0.255 1.255 24 C -0.164 4.164 25 C 0.089 3.911 26 H 0.065 0.935 27 C -0.141 4.141 28 O -0.384 6.384 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.420 0.580 36 H 0.119 0.881 37 H 0.125 0.875 38 H 0.120 0.880 39 H 0.112 0.888 40 H 0.294 0.706 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.069 0.931 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.952 11.933 -6.713 13.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.031 3.969 3 H 0.145 0.855 4 C -0.189 4.189 5 C 0.044 3.956 6 N -0.863 5.863 7 S 2.811 3.189 8 O -0.999 6.999 9 O -0.992 6.992 10 C -0.881 4.881 11 C -0.036 4.036 12 C -0.268 4.268 13 C -0.093 4.093 14 C -0.203 4.203 15 C 0.167 3.833 16 C -0.501 4.501 17 H 0.111 0.889 18 C -0.178 4.178 19 N -0.432 5.432 20 Si 0.791 3.209 21 H -0.172 1.172 22 H -0.195 1.195 23 H -0.179 1.179 24 C -0.203 4.203 25 C 0.031 3.969 26 H 0.083 0.917 27 C -0.198 4.198 28 O -0.303 6.303 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.255 0.745 36 H 0.137 0.863 37 H 0.143 0.857 38 H 0.138 0.862 39 H 0.130 0.870 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.231 11.809 -5.994 13.300 hybrid contribution 0.913 -1.079 0.056 1.414 sum -0.318 10.730 -5.938 12.268 Atomic orbital electron populations 1.22527 0.95887 1.02649 1.03800 1.22309 0.93997 0.96942 0.83611 0.85460 1.22526 1.02889 0.93323 1.00190 1.20908 0.97986 0.92570 0.84102 1.55399 1.30298 1.55239 1.45317 1.00472 0.71978 0.73003 0.73397 1.93422 1.43314 1.77858 1.85344 1.93488 1.69579 1.79546 1.56589 1.30071 1.00148 1.27833 1.30056 1.20535 0.94188 0.95317 0.93565 1.20849 0.98648 1.01562 1.05728 1.21217 0.93054 0.97393 0.97642 1.21532 0.96409 1.01676 1.00698 1.17204 0.91080 0.88729 0.86316 1.20142 0.94494 0.97903 1.37537 0.88942 1.26752 1.05852 0.93975 0.91174 1.69823 1.38312 1.01443 1.33587 0.85299 0.75728 0.80672 0.79193 1.17152 1.19487 1.17923 1.22735 1.02527 1.00202 0.94869 1.22044 0.98265 0.81716 0.94853 0.91732 1.21736 1.01857 1.00591 0.95659 1.87944 1.74150 1.24511 1.43710 0.89973 0.90885 0.93067 0.88945 0.89813 0.89777 0.74464 0.86279 0.85667 0.86178 0.87021 0.89471 0.90903 0.91590 0.92169 0.91162 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.61 8.62 71.98 0.62 -2.99 16 2 C 0.09 1.79 3.91 30.62 0.12 1.91 16 3 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 4 C -0.15 -3.36 5.19 30.68 0.16 -3.20 16 5 C 0.15 4.46 2.57 45.11 0.12 4.57 16 6 N -1.10 -37.61 4.49 -168.89 -0.76 -38.37 16 7 S 2.71 117.74 4.92 -56.49 -0.28 117.46 16 8 O -1.01 -44.92 16.34 -128.00 -2.09 -47.01 16 9 O -1.00 -50.37 16.71 -128.00 -2.14 -52.51 16 10 C -0.79 -36.70 5.16 22.73 0.12 -36.58 16 11 C -0.02 -0.71 9.53 22.22 0.21 -0.50 16 12 C -0.25 -10.13 10.05 22.46 0.23 -9.91 16 13 C -0.07 -3.17 10.02 22.22 0.22 -2.95 16 14 C -0.18 -8.88 8.66 22.73 0.20 -8.68 16 15 C 0.17 8.52 5.17 -21.29 -0.11 8.41 16 16 C -0.47 -23.34 7.68 23.46 0.18 -23.16 16 17 H 0.09 4.27 5.66 -2.91 -0.02 4.26 16 18 C 0.04 1.93 5.23 85.26 0.45 2.37 16 19 N -0.81 -39.84 10.92 21.83 0.24 -39.60 16 20 Si 0.97 36.25 29.58 68.60 2.03 38.28 16 21 H -0.25 -8.90 7.11 99.48 0.71 -8.19 16 22 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 23 H -0.26 -8.87 7.11 99.48 0.71 -8.17 16 24 C -0.16 -4.98 5.03 30.69 0.15 -4.83 16 25 C 0.09 2.31 2.94 30.63 0.09 2.40 16 26 H 0.06 1.61 6.45 -2.38 -0.02 1.60 16 27 C -0.14 -3.33 9.56 71.98 0.69 -2.64 16 28 O -0.38 -9.41 10.24 -148.98 -1.53 -10.94 16 29 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.05 1.13 5.01 -2.38 -0.01 1.11 16 32 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.08 2.59 5.90 -2.39 -0.01 2.57 16 35 H 0.42 12.79 8.56 -96.75 -0.83 11.97 16 36 H 0.12 4.79 7.33 -2.91 -0.02 4.76 16 37 H 0.13 4.28 8.06 -2.91 -0.02 4.25 16 38 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 39 H 0.11 5.58 6.28 -2.91 -0.02 5.56 16 40 H 0.29 13.03 8.30 -92.71 -0.77 12.26 16 41 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.07 2.36 6.97 -2.38 -0.02 2.34 16 43 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 44 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -63.35 363.67 -0.90 -64.24 By element: Atomic # 1 Polarization: 44.02 SS G_CDS: 0.19 Total: 44.21 kcal Atomic # 6 Polarization: -79.21 SS G_CDS: 3.44 Total: -75.77 kcal Atomic # 7 Polarization: -77.45 SS G_CDS: -0.52 Total: -77.97 kcal Atomic # 8 Polarization: -104.70 SS G_CDS: -5.76 Total: -110.46 kcal Atomic # 14 Polarization: 36.25 SS G_CDS: 2.03 Total: 38.28 kcal Atomic # 16 Polarization: 117.74 SS G_CDS: -0.28 Total: 117.46 kcal Total: -63.35 -0.90 -64.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601383986.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.999 kcal (2) G-P(sol) polarization free energy of solvation -63.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds