Wall clock time and date at job start Sat Apr 11 2020 05:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.57191 * 2 1 4 4 C 1.53092 * 109.52493 * 120.16052 * 2 1 3 5 5 O 1.42900 * 109.41998 * 177.51679 * 4 2 1 6 6 C 1.42907 * 114.09671 * 298.84610 * 5 4 2 7 7 C 1.53089 * 109.41798 * 61.15404 * 6 5 4 8 8 C 1.53180 * 109.52524 * 239.84941 * 2 1 3 9 9 H 1.09002 * 109.61216 * 303.02018 * 8 2 1 10 10 C 1.52999 * 109.54731 * 63.24425 * 8 2 1 11 11 N 1.46494 * 109.47206 * 184.56038 * 10 8 2 12 12 S 1.65599 * 120.00074 * 163.32802 * 11 10 8 13 13 O 1.42106 * 106.40130 * 309.00480 * 12 11 10 14 14 O 1.42093 * 106.40309 * 176.08557 * 12 11 10 15 15 C 1.76194 * 107.22032 * 62.54247 * 12 11 10 16 16 C 1.37643 * 120.12765 * 112.56885 * 15 12 11 17 17 C 1.38610 * 120.24981 * 180.02562 * 16 15 12 18 18 C 1.38662 * 120.50244 * 0.04348 * 17 16 15 19 19 C 1.37601 * 120.24623 * 359.67037 * 18 17 16 20 20 C 1.40702 * 120.13334 * 292.59334 * 15 12 11 21 21 C 1.41400 * 120.23912 * 359.97438 * 20 15 12 22 22 H 1.08002 * 119.99915 * 317.50918 * 21 20 15 23 23 C 1.39941 * 119.99664 * 137.50571 * 21 20 15 24 24 N 1.30833 * 119.99512 * 151.33729 * 23 21 20 25 25 Si 1.86791 * 120.00539 * 331.34452 * 23 21 20 26 26 H 1.48511 * 109.47015 * 269.06374 * 25 23 21 27 27 H 1.48496 * 109.47841 * 149.06325 * 25 23 21 28 28 H 1.48496 * 109.47373 * 29.06050 * 25 23 21 29 29 H 1.08998 * 109.46671 * 180.14840 * 1 2 3 30 30 H 1.08997 * 109.47043 * 300.15752 * 1 2 3 31 31 H 1.09003 * 109.46737 * 60.15715 * 1 2 3 32 32 H 1.08997 * 109.47745 * 57.52855 * 4 2 1 33 33 H 1.09007 * 109.48723 * 297.50503 * 4 2 1 34 34 H 1.08998 * 109.47691 * 301.17052 * 6 5 4 35 35 H 1.08994 * 109.48010 * 181.14264 * 6 5 4 36 36 H 1.08994 * 109.52279 * 182.48859 * 7 6 5 37 37 H 1.08996 * 109.52000 * 62.29794 * 7 6 5 38 38 H 1.08999 * 109.46715 * 64.55401 * 10 8 2 39 39 H 1.09003 * 109.46583 * 304.56248 * 10 8 2 40 40 H 0.96998 * 120.00386 * 343.31940 * 11 10 8 41 41 H 1.07999 * 119.87604 * 0.02562 * 16 15 12 42 42 H 1.08005 * 119.74896 * 180.02562 * 17 16 15 43 43 H 1.07998 * 119.87358 * 179.97438 * 18 17 16 44 44 H 1.08001 * 120.12801 * 180.30202 * 19 18 17 45 45 H 0.97004 * 119.99704 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0271 0.0000 4 6 2.0417 -0.7249 1.2476 5 8 3.4695 -0.7743 1.2163 6 6 4.0044 -1.4815 0.0956 7 6 3.5717 -0.7870 -1.1982 8 6 2.0420 -0.7251 -1.2484 9 1 1.6369 -1.7367 -1.2758 10 6 1.6013 0.0368 -2.4998 11 7 1.9973 -0.7142 -3.6936 12 16 1.3100 -0.3629 -5.1587 13 8 -0.0963 -0.3711 -4.9545 14 8 1.9612 -1.1874 -6.1154 15 6 1.7457 1.2978 -5.5544 16 6 2.5879 1.5579 -6.6116 17 6 2.9327 2.8634 -6.9248 18 6 2.4355 3.9211 -6.1785 19 6 1.5874 3.6849 -5.1210 20 6 1.2345 2.3632 -4.7908 21 6 0.3684 2.1081 -3.7025 22 1 -0.4163 1.3722 -3.7979 23 6 0.5282 2.8091 -2.5019 24 7 -0.5048 3.0270 -1.7293 25 14 2.2163 3.4339 -2.0026 26 1 2.9021 2.4042 -1.1811 27 1 2.0682 4.6812 -1.2105 28 1 3.0207 3.7128 -3.2193 29 1 -0.3632 -1.0277 0.0027 30 1 -0.3633 0.5163 0.8885 31 1 -0.3633 0.5114 -0.8914 32 1 1.6432 -1.7392 1.2676 33 1 1.7159 -0.1888 2.1390 34 1 3.6317 -2.5058 0.1006 35 1 5.0926 -1.4903 0.1571 36 1 3.9418 -1.3498 -2.0551 37 1 3.9781 0.2241 -1.2223 38 1 2.0759 1.0180 -2.5137 39 1 0.5180 0.1574 -2.4891 40 1 2.6622 -1.4173 -3.6260 41 1 2.9815 0.7418 -7.1993 42 1 3.5938 3.0583 -7.7563 43 1 2.7112 4.9342 -6.4313 44 1 1.1974 4.5104 -4.5440 45 1 -0.3940 3.5126 -0.8969 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601415324.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:01 Heat of formation + Delta-G solvation = -112.004483 kcal Electronic energy + Delta-G solvation = -29837.794792 eV Core-core repulsion = 25946.488248 eV Total energy + Delta-G solvation = -3891.306545 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.62452 -37.91847 -36.46179 -35.91379 -34.90965 -33.87269 -33.32435 -31.56264 -30.70622 -30.07596 -27.03400 -26.36692 -25.43930 -22.53900 -22.05936 -21.90377 -21.18357 -19.83463 -18.55632 -17.82900 -17.09438 -16.44091 -16.11297 -15.81943 -15.65559 -15.23138 -14.73511 -14.46080 -14.29289 -14.23437 -13.73245 -13.58491 -13.31449 -13.18754 -12.89096 -12.56460 -12.23839 -12.05750 -11.88213 -11.72223 -11.65965 -11.38842 -11.29272 -11.23074 -11.14994 -11.13916 -10.91446 -10.73682 -10.51657 -10.42303 -10.22912 -10.11092 -9.95243 -9.49363 -9.30860 -9.26088 -8.65338 -8.24967 -7.70492 -7.23760 -4.83251 1.46948 2.05087 2.48353 2.87846 2.97782 3.05801 3.75272 3.90693 3.95361 4.16733 4.59434 4.84586 4.85357 4.92642 5.00824 5.04247 5.27582 5.41168 5.49473 5.53706 5.70365 5.73773 5.76158 5.81178 5.82522 5.93086 5.95993 6.01720 6.15795 6.20461 6.29147 6.30648 6.39759 6.46380 6.57349 6.63587 6.75849 6.83885 6.93198 7.07058 7.21898 7.23899 7.43302 7.56399 7.64304 7.81188 8.18377 8.32668 8.52845 9.73141 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012241 B = 0.006041 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.905717 B = 4633.526504 C = 5483.526280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 H 0.081 0.919 4 C 0.068 3.932 5 O -0.387 6.387 6 C 0.062 3.938 7 C -0.156 4.156 8 C -0.097 4.097 9 H 0.076 0.924 10 C 0.129 3.871 11 N -1.120 6.120 12 S 2.708 3.292 13 O -0.967 6.967 14 O -0.999 6.999 15 C -0.762 4.762 16 C 0.006 3.994 17 C -0.246 4.246 18 C -0.059 4.059 19 C -0.198 4.198 20 C 0.165 3.835 21 C -0.496 4.496 22 H 0.135 0.865 23 C 0.107 3.893 24 N -0.764 5.764 25 Si 0.848 3.152 26 H -0.249 1.249 27 H -0.276 1.276 28 H -0.228 1.228 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.104 0.896 40 H 0.403 0.597 41 H 0.113 0.887 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.903 -4.456 5.704 9.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.142 4.142 3 H 0.100 0.900 4 C -0.009 4.009 5 O -0.305 6.305 6 C -0.014 4.014 7 C -0.194 4.194 8 C -0.117 4.117 9 H 0.094 0.906 10 C 0.003 3.997 11 N -0.878 5.878 12 S 2.804 3.196 13 O -0.957 6.957 14 O -0.990 6.990 15 C -0.856 4.856 16 C -0.014 4.014 17 C -0.266 4.266 18 C -0.078 4.078 19 C -0.218 4.218 20 C 0.161 3.839 21 C -0.523 4.523 22 H 0.152 0.848 23 C -0.117 4.117 24 N -0.385 5.385 25 Si 0.671 3.329 26 H -0.174 1.174 27 H -0.201 1.201 28 H -0.150 1.150 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.122 0.878 40 H 0.236 0.764 41 H 0.131 0.869 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.122 0.878 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.164 -4.748 5.589 8.969 hybrid contribution 1.184 0.887 0.218 1.495 sum 6.347 -3.861 5.807 9.429 Atomic orbital electron populations 1.21904 0.93634 1.01831 1.03860 1.21802 0.97154 1.00880 0.94348 0.90025 1.22671 0.80650 0.99492 0.98096 1.87895 1.20673 1.76551 1.45410 1.22561 0.98679 0.94405 0.85799 1.22316 0.96510 1.02508 0.98060 1.21559 0.94883 1.00070 0.95151 0.90609 1.22015 1.02393 0.93488 0.81755 1.55544 1.58790 1.48853 1.24579 1.00874 0.73588 0.73846 0.71310 1.93506 1.29900 1.87334 1.84962 1.93457 1.77202 1.68176 1.60160 1.30107 1.20109 1.20884 1.14483 1.20393 0.91505 0.96571 0.92899 1.20568 1.08760 0.92949 1.04360 1.20913 0.94697 0.97369 0.94806 1.21385 1.04044 0.96555 0.99807 1.17098 0.86759 0.90021 0.90062 1.20188 1.14326 1.22197 0.95603 0.84814 1.26005 0.97898 0.91499 0.96341 1.69807 1.31005 1.26736 1.10947 0.87228 0.84706 0.79533 0.81470 1.17444 1.20094 1.15027 0.93004 0.92817 0.89509 0.93300 0.89097 0.93371 0.89219 0.90689 0.90726 0.91242 0.87845 0.76396 0.86877 0.88131 0.88321 0.87782 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 8.93 37.16 0.33 -1.96 16 2 C -0.12 -1.80 2.41 -90.48 -0.22 -2.02 16 3 H 0.08 1.35 6.63 -51.93 -0.34 1.01 16 4 C 0.07 0.86 6.13 37.21 0.23 1.09 16 5 O -0.39 -5.42 10.77 -35.23 -0.38 -5.80 16 6 C 0.06 0.74 6.84 37.20 0.25 1.00 16 7 C -0.16 -2.09 5.25 -26.59 -0.14 -2.23 16 8 C -0.10 -1.44 1.88 -90.43 -0.17 -1.61 16 9 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 10 C 0.13 2.32 3.22 -4.05 -0.01 2.31 16 11 N -1.12 -19.63 5.88 -10.62 -0.06 -19.69 16 12 S 2.71 56.95 5.44 -107.50 -0.58 56.37 16 13 O -0.97 -23.07 15.15 -57.17 -0.87 -23.94 16 14 O -1.00 -21.77 16.97 -57.17 -0.97 -22.74 16 15 C -0.76 -17.09 5.92 -38.87 -0.23 -17.32 16 16 C 0.01 0.13 9.53 -39.66 -0.38 -0.25 16 17 C -0.25 -4.92 10.05 -39.29 -0.39 -5.32 16 18 C -0.06 -1.20 10.02 -39.66 -0.40 -1.60 16 19 C -0.20 -4.43 7.02 -38.87 -0.27 -4.70 16 20 C 0.17 3.87 4.51 -106.82 -0.48 3.39 16 21 C -0.50 -11.76 5.12 -37.74 -0.19 -11.96 16 22 H 0.13 3.48 5.38 -52.49 -0.28 3.19 16 23 C 0.11 2.37 4.22 -17.34 -0.07 2.30 16 24 N -0.76 -16.98 13.53 55.55 0.75 -16.23 16 25 Si 0.85 17.09 23.96 -169.99 -4.07 13.01 16 26 H -0.25 -4.73 5.83 56.52 0.33 -4.40 16 27 H -0.28 -5.51 7.11 56.52 0.40 -5.10 16 28 H -0.23 -4.79 5.74 56.52 0.32 -4.46 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.54 6.03 -51.93 -0.31 1.22 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.87 6.97 -51.93 -0.36 0.51 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.07 1.35 3.10 -51.93 -0.16 1.19 16 39 H 0.10 2.08 4.04 -51.93 -0.21 1.87 16 40 H 0.40 5.79 7.43 -34.46 -0.26 5.53 16 41 H 0.11 2.19 7.32 -52.49 -0.38 1.81 16 42 H 0.10 1.72 8.06 -52.48 -0.42 1.30 16 43 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 44 H 0.10 2.25 7.13 -52.49 -0.37 1.87 16 45 H 0.29 5.85 8.30 -40.82 -0.34 5.51 16 LS Contribution 345.02 15.07 5.20 5.20 Total: -1.00 -27.85 345.02 -9.33 -37.19 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: -6.20 Total: 15.51 kcal Atomic # 6 Polarization: -36.73 SS G_CDS: -2.15 Total: -38.88 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.69 Total: -35.93 kcal Atomic # 8 Polarization: -50.26 SS G_CDS: -2.22 Total: -52.48 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -4.07 Total: 13.01 kcal Atomic # 16 Polarization: 56.95 SS G_CDS: -0.58 Total: 56.37 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.85 -9.33 -37.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601415324.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.818 kcal (2) G-P(sol) polarization free energy of solvation -27.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds