Wall clock time and date at job start Sat Apr 11 2020 05:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.57128 * 2 1 4 4 C 1.53096 * 109.52026 * 239.84598 * 2 1 3 5 5 O 1.42901 * 109.41188 * 182.48848 * 4 2 1 6 6 C 1.42896 * 114.10339 * 61.15458 * 5 4 2 7 7 C 1.53087 * 109.41781 * 298.84686 * 6 5 4 8 8 C 1.53175 * 109.52249 * 120.16048 * 2 1 3 9 9 H 1.09008 * 109.54294 * 56.92758 * 8 2 1 10 10 C 1.52998 * 109.54387 * 296.75464 * 8 2 1 11 11 N 1.46500 * 109.46959 * 175.00009 * 10 8 2 12 12 S 1.65612 * 119.99565 * 162.95810 * 11 10 8 13 13 O 1.42094 * 106.40059 * 311.83762 * 12 11 10 14 14 O 1.42105 * 106.39732 * 178.92172 * 12 11 10 15 15 C 1.76200 * 107.22080 * 65.38048 * 12 11 10 16 16 C 1.37629 * 120.12727 * 245.29349 * 15 12 11 17 17 C 1.38616 * 120.25086 * 179.97438 * 16 15 12 18 18 C 1.38664 * 120.49868 * 0.02562 * 17 16 15 19 19 C 1.37603 * 120.24568 * 359.97438 * 18 17 16 20 20 C 1.40698 * 120.12262 * 65.26627 * 15 12 11 21 21 C 1.41392 * 120.24981 * 0.02562 * 20 15 12 22 22 H 1.07996 * 119.99965 * 329.09915 * 21 20 15 23 23 C 1.39948 * 119.99920 * 149.10015 * 21 20 15 24 24 N 1.30816 * 120.00258 * 346.01863 * 23 21 20 25 25 Si 1.86804 * 119.99558 * 166.02071 * 23 21 20 26 26 H 1.48496 * 109.47582 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46755 * 120.00053 * 25 23 21 28 28 H 1.48505 * 109.46965 * 239.99628 * 25 23 21 29 29 H 1.09001 * 109.46953 * 299.84135 * 1 2 3 30 30 H 1.08997 * 109.47473 * 59.84352 * 1 2 3 31 31 H 1.09008 * 109.47083 * 179.84105 * 1 2 3 32 32 H 1.08998 * 109.47778 * 302.46871 * 4 2 1 33 33 H 1.08994 * 109.48033 * 62.48984 * 4 2 1 34 34 H 1.09008 * 109.47674 * 58.82268 * 6 5 4 35 35 H 1.08998 * 109.48706 * 178.84782 * 6 5 4 36 36 H 1.09005 * 109.52233 * 297.69872 * 7 6 5 37 37 H 1.08998 * 109.52662 * 177.51361 * 7 6 5 38 38 H 1.08999 * 109.47518 * 54.99742 * 10 8 2 39 39 H 1.09002 * 109.47315 * 294.99932 * 10 8 2 40 40 H 0.96995 * 120.00531 * 342.95215 * 11 10 8 41 41 H 1.07999 * 119.87841 * 359.97438 * 16 15 12 42 42 H 1.07993 * 119.75543 * 179.97438 * 17 16 15 43 43 H 1.07995 * 119.87326 * 179.70113 * 18 17 16 44 44 H 1.07999 * 120.12234 * 179.97438 * 19 18 17 45 45 H 0.97001 * 120.00408 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0416 -0.7248 -1.2477 5 8 3.4694 -0.7743 -1.2163 6 6 4.0043 -1.4816 -0.0958 7 6 3.5716 -0.7873 1.1981 8 6 2.0419 -0.7253 1.2482 9 1 1.6354 -1.7364 1.2749 10 6 1.6012 0.0365 2.4997 11 7 1.9879 -0.7199 3.6933 12 16 2.0286 0.0281 5.1703 13 8 2.7458 1.2408 4.9862 14 8 2.4100 -0.9651 6.1125 15 6 0.3742 0.4840 5.5700 16 6 0.0285 1.8125 5.6690 17 6 -1.2723 2.1740 5.9827 18 6 -2.2392 1.2043 6.2008 19 6 -1.9161 -0.1300 6.1071 20 6 -0.5986 -0.5087 5.7886 21 6 -0.2550 -1.8767 5.6896 22 1 0.5212 -2.1905 5.0074 23 6 -0.9208 -2.8240 6.4756 24 7 -1.6557 -2.4357 7.4858 25 14 -0.7601 -4.6431 6.0822 26 1 0.1216 -4.8180 4.9002 27 1 -0.1716 -5.3513 7.2473 28 1 -2.1022 -5.2061 5.7870 29 1 -0.3633 0.5114 0.8914 30 1 -0.3634 0.5162 -0.8885 31 1 -0.3634 -1.0277 -0.0029 32 1 1.6431 -1.7392 -1.2678 33 1 1.7157 -0.1886 -2.1389 34 1 3.6315 -2.5059 -0.1009 35 1 5.0926 -1.4906 -0.1573 36 1 3.9780 0.2239 1.2224 37 1 3.9417 -1.3502 2.0549 38 1 0.5188 0.1640 2.4852 39 1 2.0820 1.0146 2.5179 40 1 2.2199 -1.6587 3.6185 41 1 0.7736 2.5762 5.5016 42 1 -1.5347 3.2189 6.0587 43 1 -3.2485 1.4973 6.4494 44 1 -2.6706 -0.8836 6.2778 45 1 -2.1175 -3.0922 8.0304 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601415326.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:10 Heat of formation + Delta-G solvation = -124.375348 kcal Electronic energy + Delta-G solvation = -28611.017881 eV Core-core repulsion = 24719.174896 eV Total energy + Delta-G solvation = -3891.842986 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.78578 -37.61676 -36.33781 -36.02500 -34.83365 -33.91522 -33.51039 -31.73936 -30.23995 -29.60760 -27.22307 -26.56440 -25.54333 -22.68753 -22.27943 -21.67564 -21.16791 -20.12603 -18.55694 -17.71550 -16.85513 -16.48752 -16.22994 -15.74320 -15.55832 -15.38696 -15.04742 -14.53989 -14.39043 -14.26968 -13.68083 -13.46215 -13.30595 -13.15537 -12.77751 -12.59887 -12.29339 -12.08603 -11.99538 -11.90955 -11.58600 -11.31432 -11.27036 -11.18876 -11.15105 -11.07754 -11.02455 -10.88710 -10.70876 -10.53318 -10.51660 -10.28404 -9.90094 -9.59234 -9.46002 -9.39601 -8.74122 -8.05862 -7.62397 -7.06500 -4.77488 1.53037 2.31205 2.69233 2.94754 2.99824 3.07167 3.75135 3.77406 3.92465 4.38234 4.58558 4.63540 4.65547 4.74756 4.84723 5.10625 5.24651 5.26726 5.33440 5.45117 5.45813 5.49978 5.58765 5.64870 5.73252 5.77814 5.84389 5.93894 6.00652 6.03778 6.08636 6.20544 6.24473 6.29250 6.37987 6.46480 6.76479 6.90055 7.05248 7.08123 7.28268 7.45670 7.51981 7.64232 7.77046 7.86785 8.25176 8.48517 8.61511 9.89131 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010984 B = 0.004474 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.606781 B = 6257.053427 C = 6977.750918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 H 0.082 0.918 4 C 0.067 3.933 5 O -0.386 6.386 6 C 0.060 3.940 7 C -0.153 4.153 8 C -0.091 4.091 9 H 0.080 0.920 10 C 0.128 3.872 11 N -1.121 6.121 12 S 2.701 3.299 13 O -0.998 6.998 14 O -0.964 6.964 15 C -0.774 4.774 16 C -0.003 4.003 17 C -0.249 4.249 18 C -0.075 4.075 19 C -0.157 4.157 20 C 0.190 3.810 21 C -0.450 4.450 22 H 0.088 0.912 23 C 0.082 3.918 24 N -0.775 5.775 25 Si 0.914 3.086 26 H -0.256 1.256 27 H -0.269 1.269 28 H -0.270 1.270 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.049 0.951 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.410 0.590 41 H 0.108 0.892 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.118 0.882 45 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.689 -0.513 -13.069 13.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.140 4.140 3 H 0.101 0.899 4 C -0.010 4.010 5 O -0.304 6.304 6 C -0.016 4.016 7 C -0.191 4.191 8 C -0.111 4.111 9 H 0.098 0.902 10 C 0.002 3.998 11 N -0.878 5.878 12 S 2.798 3.202 13 O -0.989 6.989 14 O -0.954 6.954 15 C -0.869 4.869 16 C -0.023 4.023 17 C -0.270 4.270 18 C -0.094 4.094 19 C -0.177 4.177 20 C 0.185 3.815 21 C -0.479 4.479 22 H 0.105 0.895 23 C -0.139 4.139 24 N -0.398 5.398 25 Si 0.737 3.263 26 H -0.179 1.179 27 H -0.193 1.193 28 H -0.195 1.195 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.110 0.890 34 H 0.067 0.933 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.243 0.757 41 H 0.126 0.874 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.136 0.864 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.417 -0.187 -12.500 12.960 hybrid contribution -1.021 -1.217 0.233 1.606 sum 2.396 -1.404 -12.266 12.577 Atomic orbital electron populations 1.21854 0.94109 1.02415 1.02534 1.21776 0.96622 1.00846 0.94792 0.89917 1.22640 0.80937 0.99613 0.97778 1.87908 1.20404 1.76511 1.45603 1.22602 0.98908 0.94511 0.85598 1.22278 0.95835 1.02696 0.98276 1.21446 0.95476 1.00199 0.93956 0.90193 1.21229 1.00125 0.94796 0.83665 1.55667 1.86084 1.22502 1.23550 1.01067 0.74734 0.72528 0.71861 1.93444 1.71999 1.47315 1.86105 1.93547 1.83162 1.59799 1.58938 1.29914 1.21738 1.00672 1.34562 1.20267 0.95650 0.93595 0.92779 1.20492 0.94305 0.97336 1.14851 1.20893 0.97319 0.93948 0.97275 1.21390 0.96813 0.94411 1.05097 1.16986 0.89952 0.91186 0.83341 1.19827 1.17019 0.91198 1.19820 0.89453 1.25917 0.92537 1.02402 0.93063 1.69790 1.21434 1.37648 1.10956 0.86152 0.79202 0.80716 0.80205 1.17890 1.19347 1.19483 0.91287 0.92542 0.92356 0.93217 0.89006 0.93271 0.89000 0.90603 0.90350 0.91297 0.90718 0.75670 0.87427 0.88710 0.88808 0.86374 0.90180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.93 37.16 0.33 -1.14 16 2 C -0.12 -1.24 2.42 -90.48 -0.22 -1.46 16 3 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 4 C 0.07 0.65 6.13 37.21 0.23 0.88 16 5 O -0.39 -4.45 10.76 -35.23 -0.38 -4.83 16 6 C 0.06 0.61 6.84 37.20 0.25 0.87 16 7 C -0.15 -1.71 5.27 -26.60 -0.14 -1.85 16 8 C -0.09 -1.05 1.80 -90.44 -0.16 -1.22 16 9 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 10 C 0.13 1.85 5.48 -4.04 -0.02 1.82 16 11 N -1.12 -18.74 4.70 -10.61 -0.05 -18.79 16 12 S 2.70 58.03 4.97 -107.50 -0.53 57.50 16 13 O -1.00 -22.41 16.40 -57.17 -0.94 -23.35 16 14 O -0.96 -23.76 16.59 -57.17 -0.95 -24.71 16 15 C -0.77 -18.19 5.94 -38.88 -0.23 -18.42 16 16 C 0.00 -0.07 9.53 -39.66 -0.38 -0.45 16 17 C -0.25 -5.37 10.05 -39.28 -0.39 -5.77 16 18 C -0.08 -1.66 10.02 -39.66 -0.40 -2.06 16 19 C -0.16 -3.82 8.65 -38.87 -0.34 -4.15 16 20 C 0.19 4.74 5.51 -106.82 -0.59 4.15 16 21 C -0.45 -11.05 7.55 -37.74 -0.28 -11.34 16 22 H 0.09 1.99 5.88 -52.49 -0.31 1.68 16 23 C 0.08 1.95 5.17 -17.34 -0.09 1.86 16 24 N -0.78 -18.98 11.17 55.55 0.62 -18.36 16 25 Si 0.91 17.71 29.58 -169.99 -5.03 12.68 16 26 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 27 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 28 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 29 H 0.07 0.74 6.42 -51.93 -0.33 0.41 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.46 8.14 -51.92 -0.42 0.03 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 0.86 7.73 -51.93 -0.40 0.46 16 38 H 0.07 1.00 6.30 -51.93 -0.33 0.68 16 39 H 0.07 1.10 7.70 -51.93 -0.40 0.70 16 40 H 0.41 6.12 8.25 -34.48 -0.28 5.83 16 41 H 0.11 2.23 7.32 -52.49 -0.38 1.85 16 42 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 44 H 0.12 2.89 6.51 -52.49 -0.34 2.55 16 45 H 0.29 6.30 8.30 -40.82 -0.34 5.97 16 LS Contribution 368.60 15.07 5.55 5.55 Total: -1.00 -30.48 368.60 -10.70 -41.17 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -6.57 Total: 11.40 kcal Atomic # 6 Polarization: -35.85 SS G_CDS: -2.43 Total: -38.28 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.57 Total: -37.15 kcal Atomic # 8 Polarization: -50.62 SS G_CDS: -2.27 Total: -52.89 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.68 kcal Atomic # 16 Polarization: 58.03 SS G_CDS: -0.53 Total: 57.50 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.48 -10.70 -41.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601415326.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.201 kcal (2) G-P(sol) polarization free energy of solvation -30.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds