Wall clock time and date at job start Sat Apr 11 2020 05:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.46115 * 2 1 4 4 C 1.53039 * 109.45954 * 119.96990 * 2 1 3 5 5 C 1.53187 * 109.31349 * 181.38464 * 4 2 1 6 6 N 1.46927 * 108.77839 * 305.36493 * 5 4 2 7 7 S 1.65597 * 120.63388 * 233.58055 * 6 5 4 8 8 O 1.42095 * 106.40177 * 343.16546 * 7 6 5 9 9 O 1.42102 * 106.40352 * 210.23882 * 7 6 5 10 10 C 1.76205 * 107.21338 * 96.70104 * 7 6 5 11 11 C 1.37637 * 120.12599 * 112.61975 * 10 7 6 12 12 C 1.38616 * 120.24920 * 180.02562 * 11 10 7 13 13 C 1.38655 * 120.50195 * 359.97382 * 12 11 10 14 14 C 1.37601 * 120.24623 * 0.02562 * 13 12 11 15 15 C 1.40697 * 120.12996 * 292.59907 * 10 7 6 16 16 C 1.41399 * 120.23950 * 0.02562 * 15 10 7 17 17 H 1.07989 * 120.00274 * 330.99871 * 16 15 10 18 18 C 1.39950 * 119.99482 * 151.00424 * 16 15 10 19 19 N 1.30826 * 119.99914 * 165.76113 * 18 16 15 20 20 Si 1.86802 * 119.99959 * 345.76083 * 18 16 15 21 21 H 1.48504 * 109.47161 * 88.27517 * 20 18 16 22 22 H 1.48498 * 109.46839 * 208.27069 * 20 18 16 23 23 H 1.48498 * 109.47150 * 328.27025 * 20 18 16 24 24 C 1.46927 * 118.73265 * 53.86491 * 6 5 4 25 25 C 1.53040 * 109.46490 * 240.04027 * 2 1 3 26 26 H 1.09003 * 109.49951 * 298.60276 * 25 2 1 27 27 C 1.53003 * 109.49721 * 58.65916 * 25 2 1 28 28 O 1.42900 * 109.47307 * 185.00184 * 27 25 2 29 29 H 1.08998 * 109.47426 * 300.03351 * 1 2 3 30 30 H 1.09011 * 109.46728 * 60.02837 * 1 2 3 31 31 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.49720 * 61.43490 * 4 2 1 33 33 H 1.08996 * 109.52536 * 301.35442 * 4 2 1 34 34 H 1.09006 * 109.59132 * 185.57751 * 5 4 2 35 35 H 1.09008 * 109.58717 * 65.15655 * 5 4 2 36 36 H 1.08007 * 119.87505 * 359.97438 * 11 10 7 37 37 H 1.08002 * 119.75073 * 179.97438 * 12 11 10 38 38 H 1.07992 * 119.87950 * 179.72412 * 13 12 11 39 39 H 1.08001 * 120.12704 * 179.97438 * 14 13 12 40 40 H 0.96993 * 120.00135 * 179.97438 * 19 18 16 41 41 H 1.08998 * 109.59204 * 65.92666 * 24 6 5 42 42 H 1.09007 * 109.58608 * 186.35215 * 24 6 5 43 43 H 1.08999 * 109.47584 * 305.01126 * 27 25 2 44 44 H 1.09012 * 109.46836 * 65.00311 * 27 25 2 45 45 H 0.96697 * 113.99574 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7208 1.2500 5 6 3.5713 -0.6887 1.2642 6 7 4.0678 -1.2489 -0.0001 7 16 5.1667 -2.4878 -0.0002 8 8 5.7285 -2.5259 1.3045 9 8 5.9463 -2.3325 -1.1780 10 6 4.2620 -3.9871 -0.1963 11 6 4.3940 -4.7278 -1.3489 12 6 3.6832 -5.9074 -1.5061 13 6 2.8328 -6.3552 -0.5067 14 6 2.6853 -5.6309 0.6540 15 6 3.4023 -4.4320 0.8247 16 6 3.2587 -3.6792 2.0131 17 1 4.0762 -3.0694 2.3681 18 6 2.0572 -3.7247 2.7291 19 7 2.0075 -3.2657 3.9533 20 14 0.5244 -4.4406 1.9371 21 1 0.4791 -5.9048 2.1807 22 1 -0.6808 -3.8035 2.5261 23 1 0.5561 -4.1827 0.4750 24 6 3.5756 -0.6846 -1.2642 25 6 2.0399 -0.7206 -1.2501 26 1 1.6974 -1.7553 -1.2388 27 6 1.5028 -0.0186 -2.4990 28 8 1.8822 -0.7581 -3.6614 29 1 -0.3634 0.5143 0.8896 30 1 -0.3633 0.5135 -0.8903 31 1 -0.3633 -1.0276 0.0005 32 1 1.6977 -1.7557 1.2382 33 1 1.6572 -0.2214 2.1401 34 1 3.9417 -1.2847 2.0984 35 1 3.9142 0.3409 1.3675 36 1 5.0533 -4.3882 -2.1341 37 1 3.7925 -6.4820 -2.4140 38 1 2.2804 -7.2733 -0.6416 39 1 2.0221 -5.9812 1.4310 40 1 1.1747 -3.2969 4.4495 41 1 3.9189 0.3452 -1.3630 42 1 3.9488 -1.2780 -2.0991 43 1 0.4158 0.0395 -2.4441 44 1 1.9179 0.9877 -2.5570 45 1 1.5751 -0.3699 -4.4921 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601471510.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:05 Heat of formation + Delta-G solvation = -111.650957 kcal Electronic energy + Delta-G solvation = -30277.120997 eV Core-core repulsion = 26385.829783 eV Total energy + Delta-G solvation = -3891.291215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -38.96720 -37.84424 -36.47719 -36.23456 -34.89439 -33.91072 -33.51558 -31.12668 -30.70586 -30.08447 -27.60240 -25.67829 -25.33783 -22.42470 -21.99285 -21.69314 -21.14171 -19.63696 -18.13243 -17.73201 -17.30099 -17.15762 -16.30255 -15.64660 -15.39260 -14.73786 -14.34888 -14.23806 -14.10719 -13.88229 -13.77266 -13.55843 -13.33569 -13.17508 -12.83752 -12.57061 -12.27906 -12.11533 -11.85731 -11.74760 -11.47996 -11.28510 -11.24826 -11.20702 -11.07863 -10.97601 -10.73092 -10.67312 -10.59188 -10.23239 -10.04170 -9.97225 -9.95561 -9.66699 -9.43732 -9.21370 -8.38470 -8.16562 -7.83027 -7.20786 -4.86695 1.46844 2.10965 2.53605 2.91320 3.00025 3.11077 3.72438 3.82741 4.24616 4.27636 4.69993 4.93959 4.98758 5.08906 5.11040 5.26017 5.39441 5.45192 5.55667 5.60022 5.77242 5.81095 5.85530 5.88258 5.93481 5.96071 6.01656 6.12000 6.16833 6.21993 6.32678 6.37660 6.43367 6.49698 6.56831 6.64174 6.83335 6.94250 6.97176 7.11649 7.20844 7.36026 7.46113 7.58584 7.68430 7.85744 8.15002 8.34276 8.53661 9.76112 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009430 B = 0.007639 C = 0.006362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.465477 B = 3664.410813 C = 4400.238829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.081 4.081 3 H 0.068 0.932 4 C -0.127 4.127 5 C 0.126 3.874 6 N -0.994 5.994 7 S 2.703 3.297 8 O -0.967 6.967 9 O -0.993 6.993 10 C -0.768 4.768 11 C 0.020 3.980 12 C -0.259 4.259 13 C -0.042 4.042 14 C -0.246 4.246 15 C 0.166 3.834 16 C -0.456 4.456 17 H 0.134 0.866 18 C 0.094 3.906 19 N -0.775 5.775 20 Si 0.902 3.098 21 H -0.267 1.267 22 H -0.287 1.287 23 H -0.242 1.242 24 C 0.139 3.861 25 C -0.099 4.099 26 H 0.088 0.912 27 C 0.080 3.920 28 O -0.569 6.569 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.054 0.946 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.108 0.892 40 H 0.291 0.709 41 H 0.061 0.939 42 H 0.089 0.911 43 H 0.049 0.951 44 H 0.044 0.956 45 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.899 7.461 -7.177 11.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.100 4.100 3 H 0.087 0.913 4 C -0.166 4.166 5 C 0.001 3.999 6 N -0.829 5.829 7 S 2.801 3.199 8 O -0.957 6.957 9 O -0.984 6.984 10 C -0.863 4.863 11 C 0.000 4.000 12 C -0.280 4.280 13 C -0.061 4.061 14 C -0.265 4.265 15 C 0.161 3.839 16 C -0.483 4.483 17 H 0.151 0.849 18 C -0.129 4.129 19 N -0.396 5.396 20 Si 0.728 3.272 21 H -0.193 1.193 22 H -0.215 1.215 23 H -0.165 1.165 24 C 0.013 3.987 25 C -0.120 4.120 26 H 0.106 0.894 27 C 0.001 3.999 28 O -0.374 6.374 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.128 0.872 35 H 0.072 0.928 36 H 0.131 0.869 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.125 0.875 40 H 0.102 0.898 41 H 0.080 0.920 42 H 0.108 0.892 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -4.773 7.329 -6.324 10.793 hybrid contribution -1.880 -0.610 -0.677 2.089 sum -6.654 6.718 -7.001 11.765 Atomic orbital electron populations 1.21939 0.95708 1.02015 1.01184 1.21049 0.95048 0.99152 0.94758 0.91340 1.21965 0.96034 1.02489 0.96089 1.21471 0.94108 0.98474 0.85868 1.57691 1.62945 1.51078 1.11185 1.01108 0.73050 0.73152 0.72585 1.93492 1.76110 1.86907 1.39215 1.93448 1.67784 1.86846 1.50348 1.29946 1.28478 1.23765 1.04066 1.20396 0.93170 0.92751 0.93664 1.20489 1.06359 1.00680 1.00448 1.20817 0.95077 0.96918 0.93256 1.21315 1.07748 0.98288 0.99149 1.17067 0.87038 0.89912 0.89852 1.20469 1.01419 1.23570 1.02792 0.84898 1.26151 1.00979 0.92236 0.93559 1.69655 1.29442 1.32391 1.08146 0.86560 0.79141 0.79213 0.82243 1.19345 1.21464 1.16475 1.21293 0.92776 0.99097 0.85489 1.21650 0.96330 1.01525 0.92449 0.89395 1.22323 0.98073 0.93974 0.85503 1.86567 1.80416 1.54113 1.16261 0.92620 0.92878 0.92601 0.89774 0.91331 0.87192 0.92753 0.86946 0.88184 0.88427 0.87451 0.89809 0.92031 0.89238 0.93287 0.93802 0.78013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.82 37.16 0.33 -1.52 16 2 C -0.08 -1.12 2.22 -90.58 -0.20 -1.32 16 3 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 4 C -0.13 -2.11 5.24 -26.61 -0.14 -2.25 16 5 C 0.13 2.25 5.52 -3.71 -0.02 2.23 16 6 N -0.99 -18.77 3.28 -113.27 -0.37 -19.15 16 7 S 2.70 60.22 5.10 -107.50 -0.55 59.68 16 8 O -0.97 -23.88 14.32 -57.17 -0.82 -24.69 16 9 O -0.99 -22.88 15.91 -57.17 -0.91 -23.79 16 10 C -0.77 -18.04 5.97 -38.87 -0.23 -18.28 16 11 C 0.02 0.44 9.53 -39.66 -0.38 0.07 16 12 C -0.26 -5.44 10.05 -39.29 -0.39 -5.83 16 13 C -0.04 -0.89 10.02 -39.66 -0.40 -1.29 16 14 C -0.25 -5.75 7.18 -38.87 -0.28 -6.02 16 15 C 0.17 4.07 5.17 -106.82 -0.55 3.52 16 16 C -0.46 -11.23 6.53 -37.74 -0.25 -11.48 16 17 H 0.13 3.49 3.99 -52.49 -0.21 3.28 16 18 C 0.09 2.19 4.33 -17.34 -0.08 2.12 16 19 N -0.78 -18.07 13.93 55.55 0.77 -17.30 16 20 Si 0.90 18.98 23.48 -169.99 -3.99 14.99 16 21 H -0.27 -5.58 6.40 56.52 0.36 -5.22 16 22 H -0.29 -5.74 7.11 56.52 0.40 -5.33 16 23 H -0.24 -5.23 6.93 56.52 0.39 -4.84 16 24 C 0.14 2.29 5.50 -3.49 -0.02 2.27 16 25 C -0.10 -1.49 2.13 -90.28 -0.19 -1.68 16 26 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 27 C 0.08 0.94 6.18 37.16 0.23 1.17 16 28 O -0.57 -7.19 13.32 -35.23 -0.47 -7.66 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.54 6.29 -51.92 -0.33 0.21 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.08 1.62 4.89 -51.93 -0.25 1.36 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.11 2.26 4.90 -51.93 -0.25 2.01 16 35 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 36 H 0.11 2.31 7.32 -52.48 -0.38 1.93 16 37 H 0.10 1.81 8.06 -52.49 -0.42 1.38 16 38 H 0.10 1.77 8.06 -52.49 -0.42 1.34 16 39 H 0.11 2.46 4.11 -52.49 -0.22 2.24 16 40 H 0.29 6.14 8.30 -40.82 -0.34 5.80 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.09 1.58 7.17 -51.93 -0.37 1.20 16 43 H 0.05 0.51 6.14 -51.93 -0.32 0.19 16 44 H 0.04 0.44 8.14 -51.92 -0.42 0.02 16 45 H 0.37 2.79 9.12 45.56 0.42 3.21 16 LS Contribution 347.65 15.07 5.24 5.24 Total: -1.00 -29.62 347.65 -9.00 -38.62 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -5.33 Total: 12.37 kcal Atomic # 6 Polarization: -35.73 SS G_CDS: -2.57 Total: -38.30 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.40 Total: -36.44 kcal Atomic # 8 Polarization: -53.95 SS G_CDS: -2.20 Total: -56.14 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -3.99 Total: 14.99 kcal Atomic # 16 Polarization: 60.22 SS G_CDS: -0.55 Total: 59.68 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.62 -9.00 -38.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601471510.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.035 kcal (2) G-P(sol) polarization free energy of solvation -29.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds