Wall clock time and date at job start Sat Apr 11 2020 05:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.46115 * 2 1 4 4 C 1.53039 * 109.45954 * 119.96990 * 2 1 3 5 5 C 1.53187 * 109.31349 * 181.38464 * 4 2 1 6 6 N 1.46927 * 108.77839 * 305.36493 * 5 4 2 7 7 S 1.65597 * 120.63388 * 233.58055 * 6 5 4 8 8 O 1.42095 * 106.40177 * 343.16546 * 7 6 5 9 9 O 1.42102 * 106.40352 * 210.23882 * 7 6 5 10 10 C 1.76205 * 107.21338 * 96.70104 * 7 6 5 11 11 C 1.37637 * 120.12599 * 112.61975 * 10 7 6 12 12 C 1.38616 * 120.24920 * 180.02562 * 11 10 7 13 13 C 1.38655 * 120.50195 * 359.97382 * 12 11 10 14 14 C 1.37601 * 120.24623 * 0.02562 * 13 12 11 15 15 C 1.40697 * 120.12996 * 292.59907 * 10 7 6 16 16 C 1.41399 * 120.23950 * 0.02562 * 15 10 7 17 17 H 1.07989 * 120.00274 * 330.99871 * 16 15 10 18 18 C 1.39950 * 119.99482 * 151.00424 * 16 15 10 19 19 N 1.30826 * 119.99914 * 165.76113 * 18 16 15 20 20 Si 1.86802 * 119.99959 * 345.76083 * 18 16 15 21 21 H 1.48504 * 109.47161 * 88.27517 * 20 18 16 22 22 H 1.48498 * 109.46839 * 208.27069 * 20 18 16 23 23 H 1.48498 * 109.47150 * 328.27025 * 20 18 16 24 24 C 1.46927 * 118.73265 * 53.86491 * 6 5 4 25 25 C 1.53040 * 109.46490 * 240.04027 * 2 1 3 26 26 H 1.09003 * 109.49951 * 298.60276 * 25 2 1 27 27 C 1.53003 * 109.49721 * 58.65916 * 25 2 1 28 28 O 1.42900 * 109.47307 * 185.00184 * 27 25 2 29 29 H 1.08998 * 109.47426 * 300.03351 * 1 2 3 30 30 H 1.09011 * 109.46728 * 60.02837 * 1 2 3 31 31 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.49720 * 61.43490 * 4 2 1 33 33 H 1.08996 * 109.52536 * 301.35442 * 4 2 1 34 34 H 1.09006 * 109.59132 * 185.57751 * 5 4 2 35 35 H 1.09008 * 109.58717 * 65.15655 * 5 4 2 36 36 H 1.08007 * 119.87505 * 359.97438 * 11 10 7 37 37 H 1.08002 * 119.75073 * 179.97438 * 12 11 10 38 38 H 1.07992 * 119.87950 * 179.72412 * 13 12 11 39 39 H 1.08001 * 120.12704 * 179.97438 * 14 13 12 40 40 H 0.96993 * 120.00135 * 179.97438 * 19 18 16 41 41 H 1.08998 * 109.59204 * 65.92666 * 24 6 5 42 42 H 1.09007 * 109.58608 * 186.35215 * 24 6 5 43 43 H 1.08999 * 109.47584 * 305.01126 * 27 25 2 44 44 H 1.09012 * 109.46836 * 65.00311 * 27 25 2 45 45 H 0.96697 * 113.99574 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7208 1.2500 5 6 3.5713 -0.6887 1.2642 6 7 4.0678 -1.2489 -0.0001 7 16 5.1667 -2.4878 -0.0002 8 8 5.7285 -2.5259 1.3045 9 8 5.9463 -2.3325 -1.1780 10 6 4.2620 -3.9871 -0.1963 11 6 4.3940 -4.7278 -1.3489 12 6 3.6832 -5.9074 -1.5061 13 6 2.8328 -6.3552 -0.5067 14 6 2.6853 -5.6309 0.6540 15 6 3.4023 -4.4320 0.8247 16 6 3.2587 -3.6792 2.0131 17 1 4.0762 -3.0694 2.3681 18 6 2.0572 -3.7247 2.7291 19 7 2.0075 -3.2657 3.9533 20 14 0.5244 -4.4406 1.9371 21 1 0.4791 -5.9048 2.1807 22 1 -0.6808 -3.8035 2.5261 23 1 0.5561 -4.1827 0.4750 24 6 3.5756 -0.6846 -1.2642 25 6 2.0399 -0.7206 -1.2501 26 1 1.6974 -1.7553 -1.2388 27 6 1.5028 -0.0186 -2.4990 28 8 1.8822 -0.7581 -3.6614 29 1 -0.3634 0.5143 0.8896 30 1 -0.3633 0.5135 -0.8903 31 1 -0.3633 -1.0276 0.0005 32 1 1.6977 -1.7557 1.2382 33 1 1.6572 -0.2214 2.1401 34 1 3.9417 -1.2847 2.0984 35 1 3.9142 0.3409 1.3675 36 1 5.0533 -4.3882 -2.1341 37 1 3.7925 -6.4820 -2.4140 38 1 2.2804 -7.2733 -0.6416 39 1 2.0221 -5.9812 1.4310 40 1 1.1747 -3.2969 4.4495 41 1 3.9189 0.3452 -1.3630 42 1 3.9488 -1.2780 -2.0991 43 1 0.4158 0.0395 -2.4441 44 1 1.9179 0.9877 -2.5570 45 1 1.5751 -0.3699 -4.4921 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601471510.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:04 Heat of formation + Delta-G solvation = -133.961313 kcal Electronic energy + Delta-G solvation = -30278.088447 eV Core-core repulsion = 26385.829783 eV Total energy + Delta-G solvation = -3892.258664 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.18307 -39.57056 -38.21887 -37.33326 -36.73704 -35.66360 -34.78723 -32.50104 -32.34295 -31.82623 -28.76838 -27.19665 -26.72668 -23.90830 -23.49484 -23.06488 -22.76251 -20.83289 -19.78181 -19.52417 -18.85225 -18.17507 -18.01341 -17.21729 -17.02968 -16.11505 -15.96365 -15.51407 -15.47799 -15.39320 -15.25867 -14.90915 -14.68752 -14.61607 -14.46359 -14.05011 -13.86317 -13.52057 -13.23808 -13.13412 -13.03629 -12.99257 -12.89119 -12.70984 -12.58335 -12.47293 -12.39184 -12.20436 -11.91934 -11.69655 -11.62304 -11.24850 -11.19009 -11.06488 -10.95987 -10.70955 -9.99824 -9.72474 -9.60494 -8.98078 -6.69340 -0.24126 0.34785 0.77104 1.19907 1.30929 1.40600 2.02385 2.20761 2.49632 2.94707 3.33193 3.38538 3.60471 3.82053 3.92416 3.96945 4.12894 4.19837 4.27386 4.37980 4.43414 4.56311 4.58903 4.60613 4.66934 4.69027 4.76532 4.79294 4.88677 4.90977 4.95642 5.03489 5.05835 5.21583 5.22067 5.29423 5.38307 5.41911 5.49305 5.54537 5.67608 5.70040 5.82634 5.87660 6.10445 6.30351 6.55226 6.71418 7.04722 8.04168 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009430 B = 0.007639 C = 0.006362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.465477 B = 3664.410813 C = 4400.238829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.075 4.075 3 H 0.097 0.903 4 C -0.127 4.127 5 C 0.123 3.877 6 N -0.989 5.989 7 S 2.711 3.289 8 O -0.999 6.999 9 O -1.006 7.006 10 C -0.786 4.786 11 C 0.003 3.997 12 C -0.254 4.254 13 C -0.041 4.041 14 C -0.271 4.271 15 C 0.149 3.851 16 C -0.473 4.473 17 H 0.108 0.892 18 C 0.079 3.921 19 N -0.799 5.799 20 Si 0.940 3.060 21 H -0.263 1.263 22 H -0.269 1.269 23 H -0.255 1.255 24 C 0.132 3.868 25 C -0.098 4.098 26 H 0.049 0.951 27 C 0.084 3.916 28 O -0.595 6.595 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.034 0.966 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.124 0.876 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.109 0.891 40 H 0.301 0.699 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.710 8.492 -9.004 14.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.094 4.094 3 H 0.115 0.885 4 C -0.166 4.166 5 C -0.001 4.001 6 N -0.827 5.827 7 S 2.809 3.191 8 O -0.990 6.990 9 O -0.996 6.996 10 C -0.879 4.879 11 C -0.016 4.016 12 C -0.274 4.274 13 C -0.059 4.059 14 C -0.290 4.290 15 C 0.145 3.855 16 C -0.500 4.500 17 H 0.126 0.874 18 C -0.143 4.143 19 N -0.422 5.422 20 Si 0.765 3.235 21 H -0.189 1.189 22 H -0.195 1.195 23 H -0.179 1.179 24 C 0.008 3.992 25 C -0.119 4.119 26 H 0.068 0.932 27 C 0.006 3.994 28 O -0.404 6.404 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.142 0.858 37 H 0.153 0.847 38 H 0.152 0.848 39 H 0.126 0.874 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -6.590 8.357 -8.159 13.410 hybrid contribution -1.244 -0.944 -0.192 1.574 sum -7.834 7.413 -8.352 13.641 Atomic orbital electron populations 1.21923 0.94303 1.01250 1.03067 1.21029 0.96175 0.99786 0.92384 0.88513 1.21942 0.94925 1.01373 0.98341 1.21535 0.95184 0.99111 0.84294 1.57444 1.62585 1.50003 1.12636 1.00654 0.73369 0.73464 0.71595 1.93446 1.77339 1.87457 1.40716 1.93415 1.68622 1.87117 1.50468 1.30188 1.28410 1.24818 1.04522 1.20708 0.93867 0.93427 0.93622 1.20942 1.04928 1.00054 1.01493 1.21248 0.94708 0.97751 0.92231 1.21484 1.08529 0.98522 1.00454 1.17265 0.87742 0.90518 0.90023 1.20328 1.01604 1.24323 1.03747 0.87404 1.26479 1.02040 0.92162 0.93618 1.69649 1.30571 1.33158 1.08782 0.85961 0.77682 0.79000 0.80838 1.18927 1.19539 1.17937 1.21564 0.94110 1.00056 0.83519 1.21610 0.95032 1.00134 0.95082 0.93209 1.22296 0.99024 0.94314 0.83761 1.86511 1.80956 1.55255 1.17672 0.91548 0.90209 0.94686 0.92773 0.90419 0.90581 0.89703 0.85809 0.84683 0.84755 0.87359 0.88768 0.88999 0.90852 0.91551 0.91078 0.75451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 8.82 71.98 0.63 -2.59 16 2 C -0.08 -1.90 2.22 -10.77 -0.02 -1.92 16 3 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 4 C -0.13 -4.19 5.24 30.67 0.16 -4.03 16 5 C 0.12 4.47 5.52 86.36 0.48 4.94 16 6 N -0.99 -37.83 3.28 -512.27 -1.68 -39.51 16 7 S 2.71 124.96 5.10 -56.49 -0.29 124.68 16 8 O -1.00 -52.02 14.32 -128.00 -1.83 -53.85 16 9 O -1.01 -47.16 15.91 -128.00 -2.04 -49.20 16 10 C -0.79 -37.87 5.97 22.73 0.14 -37.73 16 11 C 0.00 0.15 9.53 22.22 0.21 0.36 16 12 C -0.25 -10.19 10.05 22.46 0.23 -9.96 16 13 C -0.04 -1.68 10.02 22.22 0.22 -1.46 16 14 C -0.27 -12.66 7.18 22.73 0.16 -12.50 16 15 C 0.15 7.51 5.17 -21.29 -0.11 7.40 16 16 C -0.47 -24.36 6.53 23.46 0.15 -24.20 16 17 H 0.11 6.05 3.99 -2.92 -0.01 6.04 16 18 C 0.08 3.76 4.33 85.26 0.37 4.13 16 19 N -0.80 -38.23 13.93 21.83 0.30 -37.93 16 20 Si 0.94 39.19 23.48 68.60 1.61 40.80 16 21 H -0.26 -10.68 6.40 99.48 0.64 -10.05 16 22 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 23 H -0.26 -11.13 6.93 99.48 0.69 -10.44 16 24 C 0.13 4.22 5.50 86.51 0.48 4.69 16 25 C -0.10 -2.80 2.13 -10.57 -0.02 -2.82 16 26 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 27 C 0.08 1.71 6.18 71.98 0.45 2.16 16 28 O -0.60 -13.70 13.32 -148.98 -1.98 -15.69 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.08 1.31 6.29 -2.38 -0.01 1.29 16 31 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.05 2.13 4.89 -2.39 -0.01 2.12 16 33 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.08 3.32 4.90 -2.38 -0.01 3.31 16 35 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 36 H 0.12 5.06 7.32 -2.91 -0.02 5.04 16 37 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 38 H 0.13 4.43 8.06 -2.91 -0.02 4.40 16 39 H 0.11 4.95 4.11 -2.91 -0.01 4.94 16 40 H 0.30 12.85 8.30 -92.71 -0.77 12.08 16 41 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.07 2.57 7.17 -2.38 -0.02 2.55 16 43 H 0.07 1.13 6.14 -2.39 -0.01 1.12 16 44 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 45 H 0.40 4.81 9.12 -74.06 -0.68 4.13 16 Total: -1.00 -66.65 347.65 -2.12 -68.77 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: 0.27 Total: 35.47 kcal Atomic # 6 Polarization: -77.05 SS G_CDS: 3.52 Total: -73.53 kcal Atomic # 7 Polarization: -76.06 SS G_CDS: -1.38 Total: -77.44 kcal Atomic # 8 Polarization: -112.89 SS G_CDS: -5.85 Total: -118.74 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 1.61 Total: 40.80 kcal Atomic # 16 Polarization: 124.96 SS G_CDS: -0.29 Total: 124.68 kcal Total: -66.65 -2.12 -68.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601471510.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.191 kcal (2) G-P(sol) polarization free energy of solvation -66.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds