Wall clock time and date at job start Sat Apr 11 2020 05:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46160 * 2 1 4 4 C 1.53044 * 109.44419 * 119.96763 * 2 1 3 5 5 C 1.53621 * 109.24839 * 58.52269 * 4 2 1 6 6 N 1.46933 * 108.54090 * 54.85346 * 5 4 2 7 7 S 1.65594 * 120.62869 * 126.36932 * 6 5 4 8 8 O 1.42099 * 106.40110 * 166.86384 * 7 6 5 9 9 O 1.42100 * 106.40463 * 33.94850 * 7 6 5 10 10 C 1.76201 * 107.22002 * 280.40604 * 7 6 5 11 11 C 1.37638 * 120.12834 * 111.04783 * 10 7 6 12 12 C 1.38612 * 120.24746 * 180.02562 * 11 10 7 13 13 C 1.38662 * 120.49987 * 359.94812 * 12 11 10 14 14 C 1.37591 * 120.25087 * 359.76361 * 13 12 11 15 15 C 1.40694 * 120.12607 * 291.01771 * 10 7 6 16 16 C 1.41400 * 120.24619 * 0.03040 * 15 10 7 17 17 H 1.08005 * 120.00005 * 36.02075 * 16 15 10 18 18 C 1.39950 * 120.00004 * 216.02493 * 16 15 10 19 19 N 1.30819 * 119.99530 * 193.55075 * 18 16 15 20 20 Si 1.86796 * 120.00067 * 13.54910 * 18 16 15 21 21 H 1.48504 * 109.47319 * 266.02917 * 20 18 16 22 22 H 1.48496 * 109.47076 * 26.02756 * 20 18 16 23 23 H 1.48499 * 109.47291 * 146.02579 * 20 18 16 24 24 C 1.46926 * 118.73681 * 306.10068 * 6 5 4 25 25 C 1.53038 * 109.45816 * 240.02259 * 2 1 3 26 26 H 1.09001 * 109.49409 * 181.40838 * 25 2 1 27 27 C 1.52999 * 109.52348 * 61.32988 * 25 2 1 28 28 O 1.42902 * 109.47090 * 175.14047 * 27 25 2 29 29 H 1.08996 * 109.47103 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46939 * 299.97156 * 1 2 3 31 31 H 1.08994 * 109.46837 * 59.97544 * 1 2 3 32 32 H 1.09004 * 109.49546 * 178.59867 * 4 2 1 33 33 H 1.09002 * 109.49935 * 298.65849 * 4 2 1 34 34 H 1.09003 * 109.73909 * 295.12304 * 5 4 2 35 35 H 1.08993 * 109.66762 * 174.54378 * 5 4 2 36 36 H 1.07993 * 119.87392 * 359.97251 * 11 10 7 37 37 H 1.08001 * 119.75013 * 179.97438 * 12 11 10 38 38 H 1.08007 * 119.87220 * 180.02562 * 13 12 11 39 39 H 1.08004 * 120.13027 * 180.25601 * 14 13 12 40 40 H 0.97009 * 119.99593 * 180.02562 * 19 18 16 41 41 H 1.09003 * 109.58528 * 173.65118 * 24 6 5 42 42 H 1.09003 * 109.58308 * 294.06437 * 24 6 5 43 43 H 1.08998 * 109.47193 * 295.14324 * 27 25 2 44 44 H 1.09006 * 109.46883 * 55.14136 * 27 25 2 45 45 H 0.96700 * 113.99809 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0395 -0.7209 1.2502 5 6 1.4940 -2.1569 1.2645 6 7 1.8619 -2.8090 0.0002 7 16 2.6640 -4.2577 0.0005 8 8 2.5930 -4.7559 -1.3284 9 8 2.1877 -4.9800 1.1277 10 6 4.3636 -3.9129 0.3124 11 6 4.9388 -4.2948 1.5030 12 6 6.2754 -4.0243 1.7512 13 6 7.0482 -3.3683 0.8051 14 6 6.4957 -2.9825 -0.3945 15 6 5.1381 -3.2467 -0.6550 16 6 4.5579 -2.8496 -1.8819 17 1 3.5347 -2.5050 -1.9089 18 6 5.3096 -2.9031 -3.0611 19 7 4.8802 -2.2978 -4.1384 20 14 6.9259 -3.8388 -3.0968 21 1 8.0456 -2.9037 -2.8190 22 1 6.9035 -4.9050 -2.0634 23 1 7.1136 -4.4517 -4.4363 24 6 1.4993 -2.1542 -1.2641 25 6 2.0398 -0.7210 -1.2499 26 1 3.1296 -0.7433 -1.2380 27 6 1.5578 0.0189 -2.4994 28 8 2.1266 -0.5878 -3.6614 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5134 0.8902 31 1 -0.3633 0.5142 -0.8897 32 1 3.1293 -0.7432 1.2386 33 1 1.6960 -0.1931 2.1399 34 1 0.4086 -2.1374 1.3631 35 1 1.9291 -2.7063 2.0991 36 1 4.3463 -4.8063 2.2470 37 1 6.7185 -4.3273 2.6884 38 1 8.0888 -3.1630 1.0089 39 1 7.1004 -2.4753 -1.1318 40 1 5.4011 -2.3352 -4.9560 41 1 1.9379 -2.7020 -2.0982 42 1 0.4144 -2.1346 -1.3673 43 1 0.4707 -0.0347 -2.5567 44 1 1.8678 1.0626 -2.4458 45 1 1.8640 -0.1688 -4.4924 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601471511.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:10 Heat of formation + Delta-G solvation = -102.082718 kcal Electronic energy + Delta-G solvation = -30273.068261 eV Core-core repulsion = 26382.191956 eV Total energy + Delta-G solvation = -3890.876305 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.19860 -37.75993 -36.30859 -35.91369 -34.80251 -33.70495 -33.10574 -31.16492 -30.57084 -30.01873 -27.40132 -25.53770 -25.10379 -23.62201 -21.95744 -21.54908 -21.05730 -18.83393 -17.77779 -17.60050 -17.17306 -16.75985 -16.21773 -15.58609 -15.23606 -14.85969 -14.41896 -14.25151 -13.93388 -13.81117 -13.71088 -13.48014 -13.31346 -13.11696 -12.76194 -12.29711 -12.17623 -11.90971 -11.80033 -11.74209 -11.33644 -11.19394 -11.09048 -10.96553 -10.91491 -10.85305 -10.80065 -10.67119 -10.48680 -10.16456 -10.03830 -9.91295 -9.81339 -9.40367 -9.34099 -9.18166 -8.32694 -8.14134 -7.68947 -6.96476 -4.67754 1.48997 2.15119 2.61059 3.06442 3.16795 3.29243 3.84479 3.94304 4.40818 4.62128 4.76374 4.97129 5.07119 5.15015 5.29872 5.31126 5.41396 5.55270 5.61755 5.67360 5.74017 5.83986 5.87119 5.88862 5.90830 5.98677 6.00230 6.11103 6.16873 6.24119 6.24618 6.35327 6.48747 6.50520 6.58732 6.75292 6.81844 6.89466 7.06218 7.16820 7.20226 7.38016 7.52038 7.64104 7.92598 8.22925 8.26993 8.40067 8.65833 9.97832 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010664 B = 0.007382 C = 0.005486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.964430 B = 3792.219129 C = 5102.444257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.080 4.080 3 H 0.067 0.933 4 C -0.128 4.128 5 C 0.127 3.873 6 N -0.999 5.999 7 S 2.696 3.304 8 O -0.954 6.954 9 O -0.997 6.997 10 C -0.768 4.768 11 C 0.014 3.986 12 C -0.261 4.261 13 C -0.048 4.048 14 C -0.229 4.229 15 C 0.157 3.843 16 C -0.442 4.442 17 H 0.127 0.873 18 C 0.094 3.906 19 N -0.756 5.756 20 Si 0.899 3.101 21 H -0.270 1.270 22 H -0.243 1.243 23 H -0.285 1.285 24 C 0.127 3.873 25 C -0.100 4.100 26 H 0.103 0.897 27 C 0.084 3.916 28 O -0.536 6.536 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.285 0.715 41 H 0.118 0.882 42 H 0.057 0.943 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.741 7.130 3.824 9.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.099 4.099 3 H 0.085 0.915 4 C -0.167 4.167 5 C 0.001 3.999 6 N -0.834 5.834 7 S 2.794 3.206 8 O -0.945 6.945 9 O -0.988 6.988 10 C -0.862 4.862 11 C -0.005 4.005 12 C -0.282 4.282 13 C -0.067 4.067 14 C -0.249 4.249 15 C 0.151 3.849 16 C -0.468 4.468 17 H 0.145 0.855 18 C -0.130 4.130 19 N -0.376 5.376 20 Si 0.724 3.276 21 H -0.196 1.196 22 H -0.166 1.166 23 H -0.212 1.212 24 C 0.003 3.997 25 C -0.120 4.120 26 H 0.121 0.879 27 C 0.005 3.995 28 O -0.339 6.339 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.129 0.871 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.123 0.877 40 H 0.096 0.904 41 H 0.135 0.865 42 H 0.075 0.925 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -5.960 5.993 3.837 9.282 hybrid contribution 1.288 0.677 -0.332 1.492 sum -4.672 6.670 3.505 8.865 Atomic orbital electron populations 1.22019 0.95765 1.02292 1.01077 1.20986 0.95399 0.98811 0.94699 0.91467 1.21988 1.01880 0.95651 0.97186 1.21348 0.99762 0.93358 0.85427 1.57865 1.73047 1.41462 1.11066 1.01349 0.74092 0.72286 0.72894 1.93546 1.87136 1.77101 1.36713 1.93443 1.81195 1.69954 1.54199 1.30090 1.23514 1.25831 1.06766 1.20388 0.94747 0.91987 0.93424 1.20459 0.95066 1.12140 1.00520 1.20820 0.97397 0.94563 0.93882 1.21229 0.96930 1.08813 0.97929 1.17109 0.90885 0.85427 0.91436 1.20303 1.02662 1.33986 0.89855 0.85541 1.26031 0.98789 0.93011 0.95199 1.69735 1.37048 1.29111 1.01729 0.86502 0.80974 0.81730 0.78353 1.19609 1.16597 1.21224 1.21519 0.98840 0.93386 0.85991 1.21570 1.03553 0.94851 0.92043 0.87925 1.22108 0.95514 0.95087 0.86828 1.86907 1.73285 1.58731 1.14957 0.91830 0.93075 0.92863 0.90805 0.91434 0.91626 0.90157 0.87138 0.88358 0.88518 0.87694 0.90402 0.86456 0.92531 0.94597 0.94626 0.78989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.11 37.16 0.30 -1.41 16 2 C -0.08 -1.05 2.71 -90.58 -0.25 -1.30 16 3 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.13 -1.74 5.64 -26.39 -0.15 -1.89 16 5 C 0.13 1.92 5.91 -3.48 -0.02 1.90 16 6 N -1.00 -18.51 3.23 -113.27 -0.37 -18.87 16 7 S 2.70 60.33 5.03 -107.50 -0.54 59.79 16 8 O -0.95 -24.31 14.93 -57.17 -0.85 -25.17 16 9 O -1.00 -22.81 16.07 -57.17 -0.92 -23.73 16 10 C -0.77 -18.00 5.98 -38.87 -0.23 -18.23 16 11 C 0.01 0.31 9.53 -39.66 -0.38 -0.06 16 12 C -0.26 -5.42 10.05 -39.29 -0.39 -5.81 16 13 C -0.05 -1.01 10.02 -39.66 -0.40 -1.41 16 14 C -0.23 -5.35 7.10 -38.87 -0.28 -5.63 16 15 C 0.16 3.86 4.98 -106.82 -0.53 3.33 16 16 C -0.44 -11.18 7.34 -37.74 -0.28 -11.46 16 17 H 0.13 3.11 2.09 -52.48 -0.11 3.00 16 18 C 0.09 2.36 5.44 -17.34 -0.09 2.27 16 19 N -0.76 -18.60 13.93 55.55 0.77 -17.83 16 20 Si 0.90 20.46 24.57 -169.99 -4.18 16.28 16 21 H -0.27 -5.83 6.77 56.52 0.38 -5.45 16 22 H -0.24 -5.86 6.84 56.52 0.39 -5.47 16 23 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 24 C 0.13 2.30 4.00 -3.72 -0.01 2.28 16 25 C -0.10 -1.63 1.99 -90.51 -0.18 -1.81 16 26 H 0.10 2.04 6.72 -51.93 -0.35 1.69 16 27 C 0.08 1.20 5.97 37.16 0.22 1.43 16 28 O -0.54 -9.16 13.30 -35.23 -0.47 -9.63 16 29 H 0.06 0.75 4.96 -51.93 -0.26 0.49 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.54 6.58 -51.93 -0.34 0.20 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.86 6.69 -51.93 -0.35 0.51 16 35 H 0.08 1.22 7.43 -51.93 -0.39 0.84 16 36 H 0.11 2.22 7.33 -52.49 -0.38 1.83 16 37 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 39 H 0.11 2.39 5.18 -52.48 -0.27 2.12 16 40 H 0.29 6.42 8.30 -40.82 -0.34 6.09 16 41 H 0.12 2.57 5.02 -51.93 -0.26 2.31 16 42 H 0.06 0.90 6.69 -51.93 -0.35 0.55 16 43 H 0.04 0.45 6.73 -51.93 -0.35 0.10 16 44 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.37 4.54 9.12 45.56 0.42 4.95 16 LS Contribution 346.22 15.07 5.22 5.22 Total: -1.00 -30.56 346.22 -9.12 -39.68 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -5.12 Total: 12.06 kcal Atomic # 6 Polarization: -35.13 SS G_CDS: -2.67 Total: -37.80 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.41 Total: -36.70 kcal Atomic # 8 Polarization: -56.28 SS G_CDS: -2.24 Total: -58.52 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.18 Total: 16.28 kcal Atomic # 16 Polarization: 60.33 SS G_CDS: -0.54 Total: 59.79 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.56 -9.12 -39.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601471511.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.399 kcal (2) G-P(sol) polarization free energy of solvation -30.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds