Wall clock time and date at job start Sat Apr 11 2020 05:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46160 * 2 1 4 4 C 1.53044 * 109.44419 * 119.96763 * 2 1 3 5 5 C 1.53621 * 109.24839 * 58.52269 * 4 2 1 6 6 N 1.46933 * 108.54090 * 54.85346 * 5 4 2 7 7 S 1.65594 * 120.62869 * 126.36932 * 6 5 4 8 8 O 1.42099 * 106.40110 * 166.86384 * 7 6 5 9 9 O 1.42100 * 106.40463 * 33.94850 * 7 6 5 10 10 C 1.76201 * 107.22002 * 280.40604 * 7 6 5 11 11 C 1.37638 * 120.12834 * 111.04783 * 10 7 6 12 12 C 1.38612 * 120.24746 * 180.02562 * 11 10 7 13 13 C 1.38662 * 120.49987 * 359.94812 * 12 11 10 14 14 C 1.37591 * 120.25087 * 359.76361 * 13 12 11 15 15 C 1.40694 * 120.12607 * 291.01771 * 10 7 6 16 16 C 1.41400 * 120.24619 * 0.03040 * 15 10 7 17 17 H 1.08005 * 120.00005 * 36.02075 * 16 15 10 18 18 C 1.39950 * 120.00004 * 216.02493 * 16 15 10 19 19 N 1.30819 * 119.99530 * 193.55075 * 18 16 15 20 20 Si 1.86796 * 120.00067 * 13.54910 * 18 16 15 21 21 H 1.48504 * 109.47319 * 266.02917 * 20 18 16 22 22 H 1.48496 * 109.47076 * 26.02756 * 20 18 16 23 23 H 1.48499 * 109.47291 * 146.02579 * 20 18 16 24 24 C 1.46926 * 118.73681 * 306.10068 * 6 5 4 25 25 C 1.53038 * 109.45816 * 240.02259 * 2 1 3 26 26 H 1.09001 * 109.49409 * 181.40838 * 25 2 1 27 27 C 1.52999 * 109.52348 * 61.32988 * 25 2 1 28 28 O 1.42902 * 109.47090 * 175.14047 * 27 25 2 29 29 H 1.08996 * 109.47103 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46939 * 299.97156 * 1 2 3 31 31 H 1.08994 * 109.46837 * 59.97544 * 1 2 3 32 32 H 1.09004 * 109.49546 * 178.59867 * 4 2 1 33 33 H 1.09002 * 109.49935 * 298.65849 * 4 2 1 34 34 H 1.09003 * 109.73909 * 295.12304 * 5 4 2 35 35 H 1.08993 * 109.66762 * 174.54378 * 5 4 2 36 36 H 1.07993 * 119.87392 * 359.97251 * 11 10 7 37 37 H 1.08001 * 119.75013 * 179.97438 * 12 11 10 38 38 H 1.08007 * 119.87220 * 180.02562 * 13 12 11 39 39 H 1.08004 * 120.13027 * 180.25601 * 14 13 12 40 40 H 0.97009 * 119.99593 * 180.02562 * 19 18 16 41 41 H 1.09003 * 109.58528 * 173.65118 * 24 6 5 42 42 H 1.09003 * 109.58308 * 294.06437 * 24 6 5 43 43 H 1.08998 * 109.47193 * 295.14324 * 27 25 2 44 44 H 1.09006 * 109.46883 * 55.14136 * 27 25 2 45 45 H 0.96700 * 113.99809 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0395 -0.7209 1.2502 5 6 1.4940 -2.1569 1.2645 6 7 1.8619 -2.8090 0.0002 7 16 2.6640 -4.2577 0.0005 8 8 2.5930 -4.7559 -1.3284 9 8 2.1877 -4.9800 1.1277 10 6 4.3636 -3.9129 0.3124 11 6 4.9388 -4.2948 1.5030 12 6 6.2754 -4.0243 1.7512 13 6 7.0482 -3.3683 0.8051 14 6 6.4957 -2.9825 -0.3945 15 6 5.1381 -3.2467 -0.6550 16 6 4.5579 -2.8496 -1.8819 17 1 3.5347 -2.5050 -1.9089 18 6 5.3096 -2.9031 -3.0611 19 7 4.8802 -2.2978 -4.1384 20 14 6.9259 -3.8388 -3.0968 21 1 8.0456 -2.9037 -2.8190 22 1 6.9035 -4.9050 -2.0634 23 1 7.1136 -4.4517 -4.4363 24 6 1.4993 -2.1542 -1.2641 25 6 2.0398 -0.7210 -1.2499 26 1 3.1296 -0.7433 -1.2380 27 6 1.5578 0.0189 -2.4994 28 8 2.1266 -0.5878 -3.6614 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5134 0.8902 31 1 -0.3633 0.5142 -0.8897 32 1 3.1293 -0.7432 1.2386 33 1 1.6960 -0.1931 2.1399 34 1 0.4086 -2.1374 1.3631 35 1 1.9291 -2.7063 2.0991 36 1 4.3463 -4.8063 2.2470 37 1 6.7185 -4.3273 2.6884 38 1 8.0888 -3.1630 1.0089 39 1 7.1004 -2.4753 -1.1318 40 1 5.4011 -2.3352 -4.9560 41 1 1.9379 -2.7020 -2.0982 42 1 0.4144 -2.1346 -1.3673 43 1 0.4707 -0.0347 -2.5567 44 1 1.8678 1.0626 -2.4458 45 1 1.8640 -0.1688 -4.4924 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601471511.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:10 Heat of formation + Delta-G solvation = -125.301523 kcal Electronic energy + Delta-G solvation = -30274.075104 eV Core-core repulsion = 26382.191956 eV Total energy + Delta-G solvation = -3891.883147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.43593 -39.49955 -38.12163 -37.18274 -36.66364 -35.49922 -34.39835 -32.52485 -32.25324 -31.76009 -28.42811 -27.15655 -26.51673 -24.89957 -23.66867 -22.87097 -22.73808 -20.29800 -19.48143 -19.19482 -18.70652 -18.00428 -17.90275 -17.16043 -16.91980 -16.22247 -15.91169 -15.73372 -15.54302 -15.24041 -15.14539 -14.87626 -14.80316 -14.50541 -14.29883 -13.97189 -13.70484 -13.45134 -13.26106 -13.00720 -12.94844 -12.89273 -12.72493 -12.68719 -12.47095 -12.44661 -12.14064 -11.97070 -11.89704 -11.71557 -11.61946 -11.27491 -11.20857 -11.02904 -10.94387 -10.53887 -9.93667 -9.66900 -9.46812 -8.79648 -6.52393 -0.22272 0.37644 0.82754 1.22751 1.34801 1.43865 2.10691 2.24312 2.62063 2.99735 3.35876 3.51027 3.64712 3.89602 3.95884 4.06768 4.18132 4.24658 4.32971 4.41132 4.43309 4.57835 4.63090 4.66472 4.69018 4.73197 4.77140 4.78076 4.85212 4.96169 5.03016 5.07413 5.21621 5.24012 5.29822 5.38266 5.42911 5.45833 5.51052 5.58181 5.68600 5.77207 5.86715 5.89749 6.16963 6.45548 6.60430 6.82316 7.21813 8.18597 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010664 B = 0.007382 C = 0.005486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.964430 B = 3792.219129 C = 5102.444257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.075 4.075 3 H 0.081 0.919 4 C -0.124 4.124 5 C 0.116 3.884 6 N -0.994 5.994 7 S 2.704 3.296 8 O -0.994 6.994 9 O -1.006 7.006 10 C -0.782 4.782 11 C 0.000 4.000 12 C -0.252 4.252 13 C -0.046 4.046 14 C -0.254 4.254 15 C 0.142 3.858 16 C -0.473 4.473 17 H 0.127 0.873 18 C 0.062 3.938 19 N -0.780 5.780 20 Si 0.932 3.068 21 H -0.251 1.251 22 H -0.266 1.266 23 H -0.277 1.277 24 C 0.130 3.870 25 C -0.097 4.097 26 H 0.058 0.942 27 C 0.084 3.916 28 O -0.572 6.572 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.127 0.873 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.105 0.895 40 H 0.291 0.709 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.182 8.474 5.990 12.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.094 4.094 3 H 0.099 0.901 4 C -0.163 4.163 5 C -0.008 4.008 6 N -0.832 5.832 7 S 2.802 3.198 8 O -0.985 6.985 9 O -0.996 6.996 10 C -0.876 4.876 11 C -0.020 4.020 12 C -0.272 4.272 13 C -0.064 4.064 14 C -0.274 4.274 15 C 0.138 3.862 16 C -0.500 4.500 17 H 0.144 0.856 18 C -0.159 4.159 19 N -0.402 5.402 20 Si 0.757 3.243 21 H -0.176 1.176 22 H -0.191 1.191 23 H -0.204 1.204 24 C 0.006 3.994 25 C -0.118 4.118 26 H 0.077 0.923 27 C 0.005 3.995 28 O -0.378 6.378 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.121 0.879 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.145 0.855 37 H 0.154 0.846 38 H 0.152 0.848 39 H 0.122 0.878 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -6.388 7.351 5.996 11.437 hybrid contribution 1.399 0.235 -0.836 1.647 sum -4.989 7.586 5.160 10.443 Atomic orbital electron populations 1.21987 0.93510 1.02335 1.02860 1.20980 0.97132 0.98779 0.92466 0.90094 1.21985 1.00287 0.94999 0.99053 1.21725 1.01608 0.93987 0.83491 1.57574 1.72316 1.40648 1.12679 1.00858 0.74027 0.73063 0.71816 1.93492 1.87590 1.78666 1.38719 1.93416 1.81221 1.70930 1.54064 1.30302 1.24368 1.25701 1.07258 1.20724 0.95808 0.92179 0.93263 1.20945 0.94423 1.10209 1.01631 1.21265 0.99261 0.93149 0.92729 1.21388 0.96702 1.10016 0.99262 1.17322 0.91861 0.85521 0.91543 1.20517 1.03288 1.35624 0.90612 0.85566 1.26501 1.00519 0.93632 0.95258 1.69750 1.37994 1.30349 1.02099 0.85998 0.79877 0.80631 0.77807 1.17626 1.19067 1.20389 1.21481 0.99843 0.93818 0.84276 1.21515 1.00886 0.94427 0.94933 0.92348 1.22216 0.96825 0.95246 0.85188 1.86876 1.74248 1.60021 1.16607 0.92560 0.90767 0.91728 0.93423 0.87897 0.88741 0.90377 0.85522 0.84628 0.84826 0.87761 0.89815 0.90844 0.90005 0.91917 0.93017 0.77125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 8.11 71.98 0.58 -2.16 16 2 C -0.07 -1.80 2.71 -10.76 -0.03 -1.83 16 3 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 4 C -0.12 -3.12 5.64 30.82 0.17 -2.95 16 5 C 0.12 3.34 5.91 86.51 0.51 3.85 16 6 N -0.99 -37.04 3.23 -512.29 -1.65 -38.69 16 7 S 2.70 123.95 5.03 -56.49 -0.28 123.66 16 8 O -0.99 -53.19 14.93 -128.00 -1.91 -55.10 16 9 O -1.01 -46.06 16.07 -128.00 -2.06 -48.12 16 10 C -0.78 -37.21 5.98 22.73 0.14 -37.08 16 11 C 0.00 0.00 9.53 22.22 0.21 0.21 16 12 C -0.25 -9.77 10.05 22.46 0.23 -9.54 16 13 C -0.05 -1.83 10.02 22.22 0.22 -1.61 16 14 C -0.25 -11.84 7.10 22.73 0.16 -11.68 16 15 C 0.14 7.20 4.98 -21.29 -0.11 7.09 16 16 C -0.47 -25.12 7.34 23.46 0.17 -24.95 16 17 H 0.13 6.59 2.09 -2.91 -0.01 6.59 16 18 C 0.06 3.25 5.44 85.26 0.46 3.72 16 19 N -0.78 -40.10 13.93 21.83 0.30 -39.79 16 20 Si 0.93 42.80 24.57 68.60 1.69 44.49 16 21 H -0.25 -10.60 6.77 99.48 0.67 -9.93 16 22 H -0.27 -13.09 6.84 99.48 0.68 -12.41 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 24 C 0.13 4.79 4.00 86.36 0.35 5.13 16 25 C -0.10 -3.17 1.99 -10.72 -0.02 -3.19 16 26 H 0.06 2.44 6.72 -2.39 -0.02 2.42 16 27 C 0.08 2.35 5.97 71.98 0.43 2.78 16 28 O -0.57 -20.11 13.30 -148.98 -1.98 -22.09 16 29 H 0.06 1.12 4.96 -2.39 -0.01 1.11 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 1.06 6.58 -2.39 -0.02 1.04 16 32 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.09 2.19 6.69 -2.39 -0.02 2.18 16 35 H 0.08 2.27 7.43 -2.39 -0.02 2.25 16 36 H 0.13 4.90 7.33 -2.91 -0.02 4.88 16 37 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 38 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 39 H 0.10 4.78 5.18 -2.91 -0.02 4.76 16 40 H 0.29 13.62 8.30 -92.70 -0.77 12.85 16 41 H 0.07 3.41 5.02 -2.39 -0.01 3.40 16 42 H 0.08 2.53 6.69 -2.39 -0.02 2.52 16 43 H 0.06 1.41 6.73 -2.39 -0.02 1.40 16 44 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 45 H 0.38 9.72 9.12 -74.06 -0.68 9.04 16 Total: -1.00 -69.29 346.22 -2.11 -71.40 By element: Atomic # 1 Polarization: 36.16 SS G_CDS: 0.31 Total: 36.47 kcal Atomic # 6 Polarization: -75.70 SS G_CDS: 3.48 Total: -72.22 kcal Atomic # 7 Polarization: -77.14 SS G_CDS: -1.35 Total: -78.49 kcal Atomic # 8 Polarization: -119.36 SS G_CDS: -5.95 Total: -125.31 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.69 Total: 44.49 kcal Atomic # 16 Polarization: 123.95 SS G_CDS: -0.28 Total: 123.66 kcal Total: -69.29 -2.11 -71.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601471511.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.902 kcal (2) G-P(sol) polarization free energy of solvation -69.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds