Wall clock time and date at job start Sat Apr 11 2020 05:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46128 * 2 1 4 4 C 1.53081 * 109.34704 * 240.12151 * 2 1 3 5 5 C 1.53195 * 109.29491 * 301.13369 * 4 2 1 6 6 N 1.46930 * 108.88893 * 305.57742 * 5 4 2 7 7 S 1.65606 * 120.62715 * 233.51721 * 6 5 4 8 8 O 1.42103 * 106.40002 * 209.50317 * 7 6 5 9 9 O 1.42097 * 106.39941 * 342.42190 * 7 6 5 10 10 C 1.76191 * 107.21858 * 95.96342 * 7 6 5 11 11 C 1.37639 * 120.12813 * 113.97115 * 10 7 6 12 12 C 1.38619 * 120.24571 * 179.69920 * 11 10 7 13 13 C 1.38662 * 120.50276 * 0.59929 * 12 11 10 14 14 C 1.37595 * 120.24469 * 359.67885 * 13 12 11 15 15 C 1.40704 * 120.12971 * 294.24796 * 10 7 6 16 16 C 1.41395 * 120.24181 * 0.02562 * 15 10 7 17 17 H 1.08004 * 119.99864 * 332.71533 * 16 15 10 18 18 C 1.39940 * 120.00164 * 152.71384 * 16 15 10 19 19 N 1.30831 * 119.99765 * 346.12057 * 18 16 15 20 20 Si 1.86799 * 120.00205 * 166.12218 * 18 16 15 21 21 H 1.48499 * 109.47003 * 60.00456 * 20 18 16 22 22 H 1.48507 * 109.47013 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47296 * 299.99728 * 20 18 16 24 24 C 1.46929 * 118.74388 * 53.53733 * 6 5 4 25 25 C 1.53039 * 109.46066 * 119.97888 * 2 1 3 26 26 H 1.08996 * 109.49793 * 178.60457 * 25 2 1 27 27 C 1.53000 * 109.49643 * 298.69866 * 25 2 1 28 28 O 1.42896 * 109.47387 * 184.83774 * 27 25 2 29 29 H 1.08997 * 109.46480 * 300.02820 * 1 2 3 30 30 H 1.08998 * 109.47192 * 60.02223 * 1 2 3 31 31 H 1.08997 * 109.47035 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.39509 * 181.25334 * 4 2 1 33 33 H 1.09002 * 109.62210 * 61.14364 * 4 2 1 34 34 H 1.09000 * 109.58951 * 185.71925 * 5 4 2 35 35 H 1.08998 * 109.58514 * 65.42905 * 5 4 2 36 36 H 1.07989 * 119.87591 * 0.02562 * 11 10 7 37 37 H 1.07996 * 119.75012 * 180.30262 * 12 11 10 38 38 H 1.07997 * 119.87343 * 179.70426 * 13 12 11 39 39 H 1.08006 * 120.12462 * 180.02562 * 14 13 12 40 40 H 0.97001 * 119.99815 * 179.97438 * 19 18 16 41 41 H 1.08998 * 109.57994 * 66.17471 * 24 6 5 42 42 H 1.08992 * 109.58579 * 186.60666 * 24 6 5 43 43 H 1.08995 * 109.47175 * 304.84153 * 27 25 2 44 44 H 1.08999 * 109.46913 * 64.84145 * 27 25 2 45 45 H 0.96700 * 114.00518 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0372 -0.7195 -1.2524 5 6 1.4995 -2.1540 -1.2647 6 7 1.8624 -2.8089 -0.0005 7 16 2.6649 -4.2575 -0.0008 8 8 2.2723 -4.9339 1.1856 9 8 2.4989 -4.8078 -1.3003 10 6 4.3819 -3.9027 0.1738 11 6 5.0557 -4.2915 1.3092 12 6 6.4079 -4.0191 1.4464 13 6 7.0942 -3.3423 0.4496 14 6 6.4395 -2.9391 -0.6915 15 6 5.0682 -3.2156 -0.8444 16 6 4.3849 -2.8056 -2.0124 17 1 3.5164 -3.3519 -2.3499 18 6 4.8338 -1.6920 -2.7312 19 7 5.7015 -0.8732 -2.1942 20 14 4.1940 -1.3744 -4.4572 21 1 2.7195 -1.2033 -4.4149 22 1 4.8195 -0.1407 -4.9978 23 1 4.5339 -2.5259 -5.3309 24 6 1.4995 -2.1544 1.2639 25 6 2.0399 -0.7210 1.2499 26 1 3.1295 -0.7431 1.2381 27 6 1.5570 0.0190 2.4990 28 8 2.1250 -0.5876 3.6614 29 1 -0.3632 0.5143 0.8897 30 1 -0.3633 0.5135 -0.8902 31 1 -0.3633 -1.0276 0.0005 32 1 3.1269 -0.7395 -1.2420 33 1 1.6909 -0.1936 -2.1422 34 1 1.9381 -2.7015 -2.0990 35 1 0.4146 -2.1366 -1.3689 36 1 4.5302 -4.8154 2.0937 37 1 6.9299 -4.3322 2.3385 38 1 8.1466 -3.1312 0.5691 39 1 6.9761 -2.4124 -1.4669 40 1 6.0130 -0.1015 -2.6926 41 1 0.4146 -2.1349 1.3669 42 1 1.9382 -2.7022 2.0979 43 1 1.8667 1.0626 2.4455 44 1 0.4698 -0.0349 2.5556 45 1 1.8612 -0.1691 4.4923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601471513.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:15 Heat of formation + Delta-G solvation = -112.707787 kcal Electronic energy + Delta-G solvation = -30257.257616 eV Core-core repulsion = 26365.920574 eV Total energy + Delta-G solvation = -3891.337042 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.17185 -37.55919 -36.44842 -36.20522 -34.84525 -33.95096 -33.08863 -31.12904 -30.19516 -29.50785 -27.39800 -25.60608 -25.34266 -23.56548 -21.67355 -21.53067 -21.08690 -18.76985 -17.81728 -17.61079 -17.14048 -17.07293 -15.92168 -15.65785 -15.37894 -14.80182 -14.46872 -14.40598 -14.04644 -13.77001 -13.68511 -13.28021 -13.20424 -13.03409 -12.74629 -12.47094 -11.97069 -11.93826 -11.77990 -11.53809 -11.32633 -11.27633 -11.19685 -11.10729 -10.98147 -10.85855 -10.68595 -10.64702 -10.54900 -10.38609 -10.09234 -9.89352 -9.76194 -9.73658 -9.34223 -9.13458 -8.24886 -7.95376 -7.57762 -7.06710 -4.75736 1.55596 2.38313 2.74312 2.92882 2.97368 3.11367 3.73116 3.90109 4.33816 4.38287 4.78256 4.99590 5.06402 5.18671 5.30927 5.36082 5.48348 5.50424 5.54280 5.65006 5.80619 5.83697 5.91149 5.96375 6.03212 6.09160 6.14565 6.18917 6.27729 6.30607 6.41581 6.48401 6.58608 6.65464 6.75884 6.86340 6.99525 7.04962 7.10158 7.33647 7.37910 7.56227 7.71639 7.74605 7.85005 7.96810 8.36294 8.51273 8.68682 9.85607 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009383 B = 0.007442 C = 0.005863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2983.314207 B = 3761.323980 C = 4774.964590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.077 4.077 3 H 0.066 0.934 4 C -0.138 4.138 5 C 0.125 3.875 6 N -0.991 5.991 7 S 2.703 3.297 8 O -0.995 6.995 9 O -0.975 6.975 10 C -0.774 4.774 11 C -0.001 4.001 12 C -0.249 4.249 13 C -0.076 4.076 14 C -0.160 4.160 15 C 0.193 3.807 16 C -0.473 4.473 17 H 0.114 0.886 18 C 0.086 3.914 19 N -0.775 5.775 20 Si 0.897 3.103 21 H -0.253 1.253 22 H -0.275 1.275 23 H -0.258 1.258 24 C 0.140 3.860 25 C -0.097 4.097 26 H 0.090 0.910 27 C 0.082 3.918 28 O -0.568 6.568 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.124 0.876 40 H 0.287 0.713 41 H 0.061 0.939 42 H 0.088 0.912 43 H 0.043 0.957 44 H 0.046 0.954 45 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.326 6.694 3.159 10.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.096 4.096 3 H 0.084 0.916 4 C -0.176 4.176 5 C 0.000 4.000 6 N -0.826 5.826 7 S 2.802 3.198 8 O -0.986 6.986 9 O -0.966 6.966 10 C -0.870 4.870 11 C -0.021 4.021 12 C -0.269 4.269 13 C -0.095 4.095 14 C -0.180 4.180 15 C 0.189 3.811 16 C -0.500 4.500 17 H 0.131 0.869 18 C -0.135 4.135 19 N -0.398 5.398 20 Si 0.720 3.280 21 H -0.177 1.177 22 H -0.200 1.200 23 H -0.182 1.182 24 C 0.014 3.986 25 C -0.117 4.117 26 H 0.109 0.891 27 C 0.004 3.996 28 O -0.373 6.373 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.073 0.927 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.141 0.859 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.106 0.894 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -7.393 5.694 2.561 9.676 hybrid contribution 0.401 1.315 -0.177 1.386 sum -6.992 7.009 2.383 10.183 Atomic orbital electron populations 1.22039 0.95969 1.02259 1.00953 1.20961 0.95102 0.98785 0.94735 0.91596 1.22079 1.04517 0.95086 0.95949 1.21464 0.98536 0.94077 0.85918 1.57636 1.72912 1.41092 1.10966 1.01046 0.74304 0.72059 0.72423 1.93439 1.83438 1.72096 1.49648 1.93458 1.87045 1.76098 1.40002 1.29865 1.22226 1.29797 1.05068 1.20233 0.94319 0.93625 0.93877 1.20480 0.95074 1.10699 1.00687 1.20891 0.97662 0.96422 0.94543 1.21497 0.94742 1.03710 0.98055 1.16967 0.91274 0.84056 0.88848 1.20449 1.13218 1.09841 1.06538 0.86874 1.25922 0.93356 0.94834 0.99410 1.69815 1.22971 1.09797 1.37223 0.86512 0.80921 0.78897 0.81660 1.17678 1.20027 1.18202 1.21206 0.99210 0.92728 0.85424 1.21501 1.02647 0.95311 0.92269 0.89136 1.22273 0.96266 0.95471 0.85601 1.86578 1.74224 1.60281 1.16215 0.93207 0.92921 0.91795 0.87998 0.91955 0.88163 0.92714 0.87571 0.88841 0.88983 0.85866 0.90218 0.92055 0.89373 0.93863 0.93613 0.78077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 8.11 37.16 0.30 -1.50 16 2 C -0.08 -1.09 2.71 -90.56 -0.25 -1.33 16 3 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.14 -2.28 5.45 -26.59 -0.15 -2.42 16 5 C 0.13 2.20 4.97 -3.71 -0.02 2.19 16 6 N -0.99 -18.93 3.27 -113.52 -0.37 -19.30 16 7 S 2.70 61.04 5.09 -107.50 -0.55 60.49 16 8 O -1.00 -23.54 15.89 -57.17 -0.91 -24.45 16 9 O -0.98 -23.74 14.51 -57.17 -0.83 -24.57 16 10 C -0.77 -18.77 5.97 -38.87 -0.23 -19.00 16 11 C 0.00 -0.01 9.54 -39.66 -0.38 -0.39 16 12 C -0.25 -5.59 10.05 -39.28 -0.39 -5.99 16 13 C -0.08 -1.73 10.02 -39.66 -0.40 -2.13 16 14 C -0.16 -3.94 8.67 -38.88 -0.34 -4.27 16 15 C 0.19 4.83 5.55 -106.82 -0.59 4.24 16 16 C -0.47 -11.26 5.84 -37.74 -0.22 -11.48 16 17 H 0.11 2.72 3.59 -52.48 -0.19 2.54 16 18 C 0.09 1.90 3.74 -17.34 -0.06 1.83 16 19 N -0.77 -17.37 10.91 55.55 0.61 -16.77 16 20 Si 0.90 16.93 29.58 -169.99 -5.03 11.90 16 21 H -0.25 -4.51 7.11 56.52 0.40 -4.10 16 22 H -0.28 -5.03 7.11 56.52 0.40 -4.62 16 23 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 24 C 0.14 2.38 5.01 -3.71 -0.02 2.36 16 25 C -0.10 -1.51 2.36 -90.50 -0.21 -1.73 16 26 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 27 C 0.08 1.03 5.97 37.16 0.22 1.25 16 28 O -0.57 -7.63 13.30 -35.23 -0.47 -8.10 16 29 H 0.05 0.50 6.57 -51.93 -0.34 0.16 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.78 4.98 -51.93 -0.26 0.52 16 32 H 0.10 1.99 5.52 -51.93 -0.29 1.71 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.10 1.95 4.76 -51.93 -0.25 1.70 16 35 H 0.05 0.82 6.70 -51.93 -0.35 0.48 16 36 H 0.11 2.34 7.32 -52.49 -0.38 1.96 16 37 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.12 3.03 6.23 -52.48 -0.33 2.71 16 40 H 0.29 5.88 8.30 -40.82 -0.34 5.54 16 41 H 0.06 0.90 6.69 -51.93 -0.35 0.56 16 42 H 0.09 1.63 7.14 -51.93 -0.37 1.26 16 43 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.05 0.49 6.72 -51.93 -0.35 0.14 16 45 H 0.37 3.04 9.12 45.56 0.42 3.46 16 LS Contribution 348.31 15.07 5.25 5.25 Total: -1.00 -29.12 348.31 -10.16 -39.28 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -5.13 Total: 14.65 kcal Atomic # 6 Polarization: -35.66 SS G_CDS: -2.74 Total: -38.39 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.23 Total: -36.07 kcal Atomic # 8 Polarization: -54.91 SS G_CDS: -2.21 Total: -57.11 kcal Atomic # 14 Polarization: 16.93 SS G_CDS: -5.03 Total: 11.90 kcal Atomic # 16 Polarization: 61.04 SS G_CDS: -0.55 Total: 60.49 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.12 -10.16 -39.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601471513.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.427 kcal (2) G-P(sol) polarization free energy of solvation -29.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds