Wall clock time and date at job start Sat Apr 11 2020 05:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47229 * 2 1 4 4 N 1.46501 * 109.47078 * 119.99865 * 2 1 3 5 5 C 1.46505 * 119.99711 * 300.00034 * 4 2 1 6 6 C 1.50703 * 109.47126 * 274.99798 * 5 4 2 7 7 H 1.07996 * 120.00027 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99948 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99855 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99769 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47411 * 90.00153 * 10 8 6 12 12 H 1.48500 * 109.46806 * 210.00122 * 10 8 6 13 13 H 1.48507 * 109.47139 * 329.99393 * 10 8 6 14 14 S 1.65594 * 120.00395 * 119.99735 * 4 2 1 15 15 O 1.42096 * 106.40440 * 336.46326 * 14 4 2 16 16 O 1.42103 * 106.40547 * 203.53898 * 14 4 2 17 17 C 1.76207 * 107.21746 * 90.00249 * 14 4 2 18 18 C 1.38292 * 120.11348 * 270.25984 * 17 14 4 19 19 C 1.37933 * 120.35070 * 180.02562 * 18 17 14 20 20 C 1.39281 * 120.23558 * 359.74412 * 19 18 17 21 21 C 1.38888 * 118.88323 * 0.36640 * 20 19 18 22 22 C 1.37747 * 120.77914 * 359.43889 * 21 20 19 23 23 C 1.51637 * 107.04711 * 179.04135 * 21 20 19 24 24 C 1.54713 * 101.94392 * 344.85822 * 23 21 20 25 25 H 1.09004 * 110.90797 * 266.84023 * 24 23 21 26 26 C 1.53001 * 110.75151 * 143.55505 * 24 23 21 27 27 O 1.36144 * 129.89752 * 180.94497 * 20 19 18 28 28 H 1.08996 * 109.47236 * 300.00653 * 1 2 3 29 29 H 1.09003 * 109.46909 * 60.00619 * 1 2 3 30 30 H 1.09002 * 109.47459 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47341 * 239.99695 * 2 1 3 32 32 H 1.09001 * 109.47180 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.46670 * 299.99528 * 3 2 1 34 34 H 1.08996 * 109.47544 * 59.99536 * 3 2 1 35 35 H 1.09000 * 109.47224 * 34.99706 * 5 4 2 36 36 H 1.09003 * 109.46978 * 154.99895 * 5 4 2 37 37 H 0.96998 * 119.99902 * 179.97438 * 9 8 6 38 38 H 1.07997 * 119.82432 * 359.80740 * 18 17 14 39 39 H 1.07998 * 119.88410 * 179.72864 * 19 18 17 40 40 H 1.08002 * 120.00677 * 180.35364 * 22 21 20 41 41 H 1.08994 * 110.94357 * 103.02016 * 23 21 20 42 42 H 1.09010 * 110.93588 * 226.70186 * 23 21 20 43 43 H 1.09004 * 109.46751 * 305.19136 * 26 24 23 44 44 H 1.08996 * 109.47311 * 65.18889 * 26 24 23 45 45 H 1.08998 * 109.47193 * 185.19416 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6643 -0.1900 2.5268 6 6 2.6337 0.8907 2.9312 7 1 3.4332 1.1763 2.2637 8 6 2.4993 1.5154 4.1530 9 7 1.5254 1.1679 4.9656 10 14 3.7005 2.8554 4.6539 11 1 3.1877 4.1739 4.2026 12 1 3.8477 2.8609 6.1316 13 1 5.0211 2.5964 4.0259 14 16 2.9703 -2.0370 1.0444 15 8 2.6903 -2.5840 -0.2368 16 8 2.8226 -2.7711 2.2521 17 6 4.6444 -1.4894 0.9966 18 6 5.2387 -1.1791 -0.2129 19 6 6.5490 -0.7505 -0.2561 20 6 7.2838 -0.6214 0.9201 21 6 6.6769 -0.9383 2.1285 22 6 5.3669 -1.3624 2.1695 23 6 7.7130 -0.7268 3.2153 24 6 9.0235 -0.6463 2.3969 25 1 9.4976 -1.6252 2.3244 26 6 9.9838 0.3747 3.0103 27 8 8.5664 -0.2050 1.1072 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9562 -0.8901 34 1 1.6767 1.9564 0.8899 35 1 0.6539 0.2182 2.5045 36 1 1.7103 -1.0073 3.2465 37 1 1.4310 1.6072 5.8252 38 1 4.6749 -1.2762 -1.1289 39 1 7.0070 -0.5144 -1.2052 40 1 4.9056 -1.6000 3.1167 41 1 7.5308 0.2046 3.7513 42 1 7.7345 -1.5725 3.9028 43 1 9.4804 1.3371 3.1026 44 1 10.2967 0.0323 3.9967 45 1 10.8584 0.4821 2.3687 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610084786.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:22 Heat of formation + Delta-G solvation = -85.185955 kcal Electronic energy + Delta-G solvation = -29005.865736 eV Core-core repulsion = 25115.722130 eV Total energy + Delta-G solvation = -3890.143606 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.17367 -37.49345 -36.92022 -36.60104 -35.22085 -33.25473 -32.82128 -31.18263 -30.62088 -30.13838 -26.98296 -26.72966 -26.48306 -23.00584 -22.74769 -21.84729 -21.77818 -20.30501 -18.25618 -17.56408 -17.31058 -16.97152 -16.67333 -16.34030 -15.59256 -15.16366 -14.54954 -14.18867 -14.00110 -13.80264 -13.59643 -13.49432 -13.16992 -13.13981 -12.94740 -12.67135 -12.53653 -12.35495 -12.24336 -12.08580 -11.78949 -11.55103 -11.47282 -11.38645 -11.18992 -11.08318 -11.01169 -10.95209 -10.79176 -10.77170 -10.52557 -10.44358 -10.30706 -9.86988 -9.58212 -8.80666 -8.49379 -8.35507 -8.01549 -6.11172 -4.15394 0.93976 1.22622 1.45913 3.06375 3.22124 3.30075 3.32082 3.46935 3.80357 4.34829 4.35930 4.37086 4.42351 4.74053 4.86564 4.93571 5.06947 5.13703 5.23036 5.35260 5.37378 5.41770 5.47662 5.62116 5.70546 5.74362 5.76513 5.80569 5.87308 6.01210 6.03034 6.16014 6.18988 6.31106 6.36293 6.40198 6.49625 6.58778 6.62466 6.79375 7.13018 7.15852 7.39037 7.45470 7.67826 7.86908 8.16605 8.89390 9.49364 10.96860 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009635 B = 0.005904 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2905.243578 B = 4741.791890 C = 6455.467696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.149 3.851 3 C -0.158 4.158 4 N -0.977 5.977 5 C 0.242 3.758 6 C -0.532 4.532 7 H 0.064 0.936 8 C 0.066 3.934 9 N -0.889 5.889 10 Si 0.886 3.114 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.274 1.274 14 S 2.693 3.307 15 O -0.980 6.980 16 O -0.959 6.959 17 C -0.691 4.691 18 C 0.011 3.989 19 C -0.165 4.165 20 C 0.151 3.849 21 C -0.197 4.197 22 C 0.053 3.947 23 C -0.106 4.106 24 C 0.075 3.925 25 H 0.088 0.912 26 C -0.150 4.150 27 O -0.302 6.302 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.051 0.949 33 H 0.045 0.955 34 H 0.084 0.916 35 H 0.045 0.955 36 H 0.052 0.948 37 H 0.263 0.737 38 H 0.143 0.857 39 H 0.132 0.868 40 H 0.146 0.854 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.337 -2.190 -7.168 12.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.043 3.957 3 C -0.217 4.217 4 N -0.816 5.816 5 C 0.121 3.879 6 C -0.572 4.572 7 H 0.083 0.917 8 C -0.137 4.137 9 N -0.528 5.528 10 Si 0.713 3.287 11 H -0.206 1.206 12 H -0.212 1.212 13 H -0.199 1.199 14 S 2.783 3.217 15 O -0.971 6.971 16 O -0.949 6.949 17 C -0.776 4.776 18 C -0.009 4.009 19 C -0.185 4.185 20 C 0.105 3.895 21 C -0.199 4.199 22 C 0.034 3.966 23 C -0.143 4.143 24 C 0.020 3.980 25 H 0.106 0.894 26 C -0.207 4.207 27 O -0.216 6.216 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.161 0.839 39 H 0.150 0.850 40 H 0.164 0.836 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.151 -2.882 -7.147 12.745 hybrid contribution 1.297 1.504 0.609 2.078 sum 11.449 -1.378 -6.537 13.256 Atomic orbital electron populations 1.22092 0.95380 1.01831 1.02221 1.20669 0.94591 0.93888 0.86583 1.22212 1.01063 0.96066 1.02336 1.57480 1.62978 1.47162 1.13987 1.19246 0.97301 0.95489 0.75893 1.21608 1.13806 1.19886 1.01892 0.91741 1.24900 0.95464 0.97001 0.96347 1.69926 1.31070 1.41981 1.09827 0.86693 0.81740 0.82483 0.77742 1.20633 1.21188 1.19903 1.01781 0.73247 0.73754 0.72939 1.93496 1.84343 1.76961 1.42255 1.93544 1.85664 1.69253 1.46473 1.31135 1.26644 1.21099 0.98748 1.20572 0.93309 0.90358 0.96615 1.20230 0.94718 1.07724 0.95779 1.19769 0.84154 0.90888 0.94686 1.20767 0.96412 1.08385 0.94332 1.20052 0.90836 0.88059 0.97686 1.21884 0.91009 1.04358 0.97062 1.23449 0.95358 0.98613 0.80629 0.89407 1.21893 0.98869 0.99075 1.00838 1.86841 1.25481 1.71689 1.37558 0.91271 0.92396 0.92834 0.90077 0.92992 0.93557 0.89668 0.93705 0.93023 0.92685 0.83912 0.85023 0.83649 0.88701 0.88745 0.91286 0.90148 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.16 37.16 0.34 -2.11 16 2 C 0.15 2.56 3.24 -67.93 -0.22 2.34 16 3 C -0.16 -2.65 8.21 37.16 0.30 -2.34 16 4 N -0.98 -19.59 2.73 -108.57 -0.30 -19.88 16 5 C 0.24 5.73 5.01 -5.19 -0.03 5.70 16 6 C -0.53 -13.30 7.53 -34.44 -0.26 -13.55 16 7 H 0.06 1.59 7.07 -52.49 -0.37 1.22 16 8 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 9 N -0.89 -24.65 13.29 55.43 0.74 -23.92 16 10 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 14 S 2.69 53.37 5.69 -107.50 -0.61 52.76 16 15 O -0.98 -19.46 15.86 -57.17 -0.91 -20.37 16 16 O -0.96 -21.68 15.85 -57.17 -0.91 -22.59 16 17 C -0.69 -12.58 5.98 -39.52 -0.24 -12.82 16 18 C 0.01 0.17 9.50 -39.67 -0.38 -0.21 16 19 C -0.17 -2.47 10.06 -39.31 -0.40 -2.87 16 20 C 0.15 2.41 7.03 -38.95 -0.27 2.14 16 21 C -0.20 -3.27 6.27 -104.10 -0.65 -3.92 16 22 C 0.05 0.97 9.51 -39.72 -0.38 0.60 16 23 C -0.11 -1.39 6.65 -26.52 -0.18 -1.57 16 24 C 0.08 0.86 4.26 -25.83 -0.11 0.75 16 25 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 26 C -0.15 -1.34 9.60 37.16 0.36 -0.98 16 27 O -0.30 -4.40 10.81 -20.20 -0.22 -4.62 16 28 H 0.07 1.17 6.69 -51.93 -0.35 0.82 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.28 6.91 -51.93 -0.36 0.92 16 32 H 0.05 0.88 7.93 -51.93 -0.41 0.47 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.64 6.65 -51.93 -0.35 1.29 16 35 H 0.05 1.09 6.45 -51.93 -0.33 0.76 16 36 H 0.05 1.35 6.91 -51.93 -0.36 0.99 16 37 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.14 1.95 7.62 -52.49 -0.40 1.55 16 39 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.15 2.75 7.63 -52.49 -0.40 2.35 16 41 H 0.09 1.27 7.90 -51.93 -0.41 0.86 16 42 H 0.09 1.04 8.14 -51.92 -0.42 0.62 16 43 H 0.07 0.68 8.11 -51.93 -0.42 0.26 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 375.79 15.07 5.66 5.66 Total: -1.00 -30.88 375.79 -10.44 -41.31 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -6.68 Total: 3.44 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: -2.20 Total: -27.22 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.44 Total: -43.80 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -2.03 Total: -47.57 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 53.37 SS G_CDS: -0.61 Total: 52.76 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.88 -10.44 -41.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610084786.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.872 kcal (2) G-P(sol) polarization free energy of solvation -30.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds