Wall clock time and date at job start Sat Apr 11 2020 05:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.47148 * 2 1 4 4 H 1.09000 * 109.67578 * 305.00010 * 3 2 1 5 5 C 1.53292 * 109.71239 * 184.46511 * 3 2 1 6 6 O 1.42963 * 109.22160 * 292.56304 * 5 3 2 7 7 C 1.42969 * 114.16348 * 297.41752 * 6 5 3 8 8 H 1.08994 * 109.55295 * 302.63334 * 7 6 5 9 9 C 1.53003 * 109.50960 * 182.50749 * 7 6 5 10 10 C 1.53296 * 109.21790 * 62.58472 * 7 6 5 11 11 N 1.47147 * 109.67680 * 65.51705 * 3 2 1 12 12 S 1.65598 * 120.98318 * 249.20365 * 11 3 2 13 13 O 1.42104 * 106.40200 * 203.54745 * 12 11 3 14 14 O 1.42103 * 106.40349 * 336.46137 * 12 11 3 15 15 C 1.76194 * 107.21928 * 90.00163 * 12 11 3 16 16 C 1.38663 * 119.87252 * 90.00122 * 15 12 11 17 17 C 1.38612 * 120.49848 * 179.97438 * 16 15 12 18 18 C 1.37638 * 120.25001 * 359.97438 * 17 16 15 19 19 C 1.40695 * 119.74671 * 0.02562 * 18 17 16 20 20 C 1.41396 * 120.24777 * 180.02562 * 19 18 17 21 21 H 1.07992 * 120.00074 * 155.23389 * 20 19 18 22 22 C 1.39944 * 119.99653 * 335.23731 * 20 19 18 23 23 N 1.30819 * 120.00308 * 342.28287 * 22 20 19 24 24 Si 1.86804 * 119.99878 * 162.28555 * 22 20 19 25 25 H 1.48496 * 109.46920 * 89.99732 * 24 22 20 26 26 H 1.48499 * 109.47052 * 209.99748 * 24 22 20 27 27 H 1.48499 * 109.47064 * 329.99872 * 24 22 20 28 28 C 1.37596 * 119.88061 * 269.72747 * 15 12 11 29 29 H 1.08999 * 109.46443 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46812 * 299.99733 * 1 2 3 31 31 H 1.08995 * 109.46944 * 60.00102 * 1 2 3 32 32 H 1.09005 * 109.47140 * 240.00460 * 2 1 3 33 33 H 1.09000 * 109.47655 * 120.00417 * 2 1 3 34 34 H 1.09000 * 109.51698 * 52.48376 * 5 3 2 35 35 H 1.08999 * 109.51050 * 172.63539 * 5 3 2 36 36 H 1.09010 * 109.47007 * 300.25523 * 9 7 6 37 37 H 1.09001 * 109.47386 * 60.25373 * 9 7 6 38 38 H 1.08997 * 109.47060 * 180.25834 * 9 7 6 39 39 H 1.09001 * 109.67483 * 187.97290 * 10 7 6 40 40 H 1.09001 * 109.71296 * 67.44263 * 10 7 6 41 41 H 1.07998 * 119.75090 * 0.02562 * 16 15 12 42 42 H 1.08002 * 119.87599 * 180.02562 * 17 16 15 43 43 H 1.08004 * 120.12897 * 180.02562 * 18 17 16 44 44 H 0.96998 * 120.00550 * 180.02562 * 23 22 20 45 45 H 1.08004 * 120.12252 * 359.97438 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6074 1.9848 -0.8407 5 6 3.5688 1.4505 -0.1123 6 8 4.1314 0.9028 1.0824 7 6 3.8389 1.6524 2.2641 8 1 4.1901 2.6770 2.1424 9 6 4.5402 1.0107 3.4630 10 6 2.3239 1.6548 2.4981 11 7 1.6638 2.1011 1.2610 12 16 0.5316 3.3093 1.2870 13 8 0.7903 4.0766 2.4548 14 8 0.5094 3.8667 -0.0200 15 6 -1.0385 2.5476 1.5297 16 6 -1.5189 2.3500 2.8154 17 6 -2.7526 1.7525 3.0213 18 6 -3.5152 1.3489 1.9490 19 6 -3.0378 1.5443 0.6400 20 6 -3.8127 1.1343 -0.4694 21 1 -3.6756 1.6098 -1.4292 22 6 -4.7575 0.1122 -0.3234 23 7 -4.6966 -0.6927 0.7060 24 14 -6.1055 -0.1027 -1.5987 25 1 -5.6372 -1.0263 -2.6630 26 1 -7.3154 -0.6683 -0.9495 27 1 -6.4354 1.2157 -2.1972 28 6 -1.7859 2.1562 0.4428 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.8742 0.8481 -0.9679 35 1 3.9189 2.4744 -0.2436 36 1 4.1898 -0.0145 3.5829 37 1 5.6173 1.0093 3.2959 38 1 4.3130 1.5801 4.3643 39 1 2.0792 2.3376 3.3116 40 1 1.9892 0.6485 2.7503 41 1 -0.9277 2.6647 3.6627 42 1 -3.1171 1.6038 4.0270 43 1 -4.4763 0.8839 2.1117 44 1 -5.3512 -1.4014 0.8070 45 1 -1.4119 2.3154 -0.5578 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619475825.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:38 Heat of formation + Delta-G solvation = -120.531826 kcal Electronic energy + Delta-G solvation = -29323.679724 eV Core-core repulsion = 25432.003406 eV Total energy + Delta-G solvation = -3891.676318 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.70033 -39.53575 -38.42652 -36.98129 -36.54793 -35.65699 -34.52582 -32.48143 -31.86259 -31.54964 -29.12486 -27.33849 -26.89279 -24.57911 -23.70217 -23.13771 -22.66085 -21.23047 -20.16549 -19.43235 -18.77483 -17.74370 -17.68435 -17.02424 -16.89019 -16.51828 -16.35168 -15.92797 -15.67853 -15.50691 -15.20842 -15.07961 -14.74408 -14.29711 -13.96737 -13.71534 -13.55692 -13.38891 -13.28748 -13.17935 -13.11433 -13.04609 -12.92659 -12.83165 -12.77846 -12.62232 -12.61323 -12.27484 -12.16392 -11.85407 -11.72456 -11.53171 -11.44903 -11.21697 -11.12116 -11.06697 -9.88113 -9.65239 -9.49718 -8.71499 -6.41937 -0.60482 0.41026 0.86932 1.37070 1.43413 1.51017 1.94323 2.17247 2.56537 2.71360 2.81425 3.25740 3.51324 3.66605 3.76684 3.98796 4.03568 4.12050 4.26996 4.30848 4.33346 4.42333 4.52375 4.56026 4.66006 4.71948 4.78665 4.83699 4.88809 4.90897 4.98354 5.00275 5.05878 5.12244 5.17521 5.20983 5.33277 5.39372 5.41954 5.53504 5.58614 5.63580 5.90364 5.94998 6.11296 6.23400 6.54287 6.82031 6.86625 8.25786 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016858 B = 0.004034 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.498074 B = 6938.762295 C = 7393.040233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.115 4.115 3 C 0.107 3.893 4 H 0.102 0.898 5 C 0.062 3.938 6 O -0.379 6.379 7 C 0.076 3.924 8 H 0.065 0.935 9 C -0.140 4.140 10 C 0.083 3.917 11 N -0.989 5.989 12 S 2.704 3.296 13 O -0.984 6.984 14 O -0.989 6.989 15 C -0.640 4.640 16 C -0.147 4.147 17 C -0.124 4.124 18 C -0.140 4.140 19 C 0.069 3.931 20 C -0.494 4.494 21 H 0.076 0.924 22 C 0.042 3.958 23 N -0.819 5.819 24 Si 0.976 3.024 25 H -0.262 1.262 26 H -0.266 1.266 27 H -0.262 1.262 28 C -0.120 4.120 29 H 0.042 0.958 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.132 0.868 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.127 0.873 42 H 0.123 0.877 43 H 0.111 0.889 44 H 0.290 0.710 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.865 -1.048 1.868 14.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.154 4.154 3 C 0.002 3.998 4 H 0.120 0.880 5 C -0.016 4.016 6 O -0.297 6.297 7 C 0.017 3.983 8 H 0.083 0.917 9 C -0.197 4.197 10 C -0.042 4.042 11 N -0.828 5.828 12 S 2.800 3.200 13 O -0.975 6.975 14 O -0.979 6.979 15 C -0.730 4.730 16 C -0.168 4.168 17 C -0.143 4.143 18 C -0.160 4.160 19 C 0.066 3.934 20 C -0.524 4.524 21 H 0.095 0.905 22 C -0.174 4.174 23 N -0.444 5.444 24 Si 0.796 3.204 25 H -0.186 1.186 26 H -0.190 1.190 27 H -0.186 1.186 28 C -0.141 4.141 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.150 0.850 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.121 0.879 40 H 0.101 0.899 41 H 0.145 0.855 42 H 0.141 0.859 43 H 0.129 0.871 44 H 0.101 0.899 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 14.035 -0.509 1.890 14.171 hybrid contribution -1.914 -0.531 -0.419 2.030 sum 12.121 -1.040 1.471 12.254 Atomic orbital electron populations 1.22140 0.96394 1.01335 1.02259 1.21747 0.94670 0.95327 1.03677 1.22028 0.97881 0.94682 0.85239 0.88030 1.23022 0.89488 1.00423 0.88666 1.87926 1.74057 1.52502 1.15264 1.22532 0.92438 0.96155 0.87179 0.91704 1.21753 1.01093 1.01791 0.95083 1.22406 0.94002 1.02287 0.85532 1.57708 1.54708 1.55933 1.14431 1.01242 0.73160 0.73325 0.72242 1.93471 1.85280 1.68086 1.50619 1.93479 1.87438 1.76518 1.40484 1.30170 1.22655 1.19848 1.00309 1.20371 0.98229 1.04127 0.94080 1.21081 0.95325 0.99424 0.98445 1.21609 0.99846 1.01823 0.92746 1.17906 0.91049 0.90748 0.93673 1.19787 1.18222 1.17289 0.97053 0.90546 1.26626 0.99135 0.93336 0.98261 1.69808 1.32774 1.12626 1.29227 0.85292 0.77235 0.79476 0.78348 1.18641 1.18995 1.18559 1.20710 0.94698 1.03013 0.95686 0.93931 0.92406 0.93648 0.88959 0.90938 0.85049 0.92075 0.91477 0.90690 0.89330 0.87921 0.89947 0.85527 0.85915 0.87132 0.89891 0.87519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.80 8.43 71.98 0.61 -5.19 16 2 C -0.12 -3.05 5.35 30.60 0.16 -2.89 16 3 C 0.11 2.83 2.68 44.97 0.12 2.95 16 4 H 0.10 2.85 6.95 -2.39 -0.02 2.84 16 5 C 0.06 1.28 6.36 72.08 0.46 1.74 16 6 O -0.38 -8.29 10.11 -148.98 -1.51 -9.80 16 7 C 0.08 1.57 3.40 30.69 0.10 1.67 16 8 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 9 C -0.14 -2.10 9.57 71.98 0.69 -1.41 16 10 C 0.08 2.03 5.59 86.36 0.48 2.51 16 11 N -0.99 -29.19 2.53 -489.38 -1.24 -30.43 16 12 S 2.70 101.13 5.74 -56.49 -0.32 100.81 16 13 O -0.98 -38.65 15.89 -128.00 -2.03 -40.69 16 14 O -0.99 -41.04 15.88 -128.00 -2.03 -43.07 16 15 C -0.64 -27.46 4.24 22.22 0.09 -27.37 16 16 C -0.15 -6.20 9.53 22.46 0.21 -5.98 16 17 C -0.12 -5.44 10.02 22.22 0.22 -5.22 16 18 C -0.14 -7.01 8.70 22.73 0.20 -6.82 16 19 C 0.07 3.58 5.57 -21.29 -0.12 3.46 16 20 C -0.49 -25.56 9.05 23.46 0.21 -25.35 16 21 H 0.08 3.86 7.91 -2.91 -0.02 3.84 16 22 C 0.04 2.03 5.14 85.26 0.44 2.47 16 23 N -0.82 -40.38 10.97 21.83 0.24 -40.14 16 24 Si 0.98 36.81 29.60 68.60 2.03 38.84 16 25 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 26 H -0.27 -9.52 7.11 99.48 0.71 -8.81 16 27 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 28 C -0.12 -5.68 6.12 22.73 0.14 -5.54 16 29 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.06 2.28 4.27 -2.39 -0.01 2.27 16 31 H 0.04 1.68 7.02 -2.39 -0.02 1.66 16 32 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 33 H 0.07 1.88 7.13 -2.39 -0.02 1.86 16 34 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.10 2.47 6.94 -2.39 -0.02 2.45 16 40 H 0.08 1.95 7.52 -2.39 -0.02 1.93 16 41 H 0.13 4.68 7.60 -2.91 -0.02 4.66 16 42 H 0.12 4.64 8.06 -2.91 -0.02 4.61 16 43 H 0.11 5.71 6.18 -2.91 -0.02 5.69 16 44 H 0.29 12.95 8.30 -92.71 -0.77 12.18 16 45 H 0.11 4.98 6.94 -2.91 -0.02 4.96 16 Total: -1.00 -62.46 361.73 0.15 -62.31 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: 0.99 Total: 33.14 kcal Atomic # 6 Polarization: -75.00 SS G_CDS: 4.02 Total: -70.97 kcal Atomic # 7 Polarization: -69.57 SS G_CDS: -1.00 Total: -70.57 kcal Atomic # 8 Polarization: -87.99 SS G_CDS: -5.57 Total: -93.56 kcal Atomic # 14 Polarization: 36.81 SS G_CDS: 2.03 Total: 38.84 kcal Atomic # 16 Polarization: 101.13 SS G_CDS: -0.32 Total: 100.81 kcal Total: -62.46 0.15 -62.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619475825.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.227 kcal (2) G-P(sol) polarization free energy of solvation -62.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds