Wall clock time and date at job start Sat Apr 11 2020 05:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00210 * 2 1 4 4 H 1.08997 * 109.45913 * 30.02643 * 3 2 1 5 5 C 1.53041 * 109.45849 * 270.06860 * 3 2 1 6 6 C 1.53629 * 109.23863 * 178.49163 * 5 3 2 7 7 N 1.46918 * 108.54671 * 54.85414 * 6 5 3 8 8 S 1.65602 * 120.63444 * 126.36775 * 7 6 5 9 9 O 1.42108 * 106.39563 * 344.69290 * 8 7 6 10 10 O 1.42089 * 106.40467 * 211.77549 * 8 7 6 11 11 C 1.76197 * 107.21702 * 98.23037 * 8 7 6 12 12 C 1.38662 * 119.87716 * 276.37152 * 11 8 7 13 13 C 1.38610 * 120.50069 * 180.02562 * 12 11 8 14 14 C 1.37633 * 120.24876 * 0.02562 * 13 12 11 15 15 C 1.40698 * 119.74662 * 0.02562 * 14 13 12 16 16 C 1.41397 * 120.24372 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99495 * 206.84600 * 16 15 14 18 18 C 1.39948 * 120.00238 * 26.84543 * 16 15 14 19 19 N 1.30828 * 119.99894 * 12.57638 * 18 16 15 20 20 Si 1.86792 * 119.99962 * 192.57588 * 18 16 15 21 21 H 1.48502 * 109.47364 * 90.00152 * 20 18 16 22 22 H 1.48498 * 109.47153 * 210.00036 * 20 18 16 23 23 H 1.48502 * 109.47349 * 330.00111 * 20 18 16 24 24 C 1.37592 * 119.87685 * 96.40041 * 11 8 7 25 25 C 1.46928 * 118.74087 * 306.09434 * 7 6 5 26 26 H 1.08998 * 109.58235 * 294.07517 * 25 7 6 27 27 C 1.53000 * 109.59066 * 173.64602 * 25 7 6 28 28 C 1.53040 * 109.46218 * 149.99974 * 3 2 1 29 29 H 1.09003 * 109.46885 * 60.00136 * 1 2 3 30 30 H 1.09000 * 109.47193 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47404 * 300.00124 * 1 2 3 32 32 H 1.08996 * 109.49994 * 298.55846 * 5 3 2 33 33 H 1.08997 * 109.49735 * 58.63292 * 5 3 2 34 34 H 1.09001 * 109.73905 * 295.11598 * 6 5 3 35 35 H 1.09004 * 109.66235 * 174.54770 * 6 5 3 36 36 H 1.08000 * 119.74975 * 0.04798 * 12 11 8 37 37 H 1.08000 * 119.87338 * 180.02562 * 13 12 11 38 38 H 1.08003 * 120.12782 * 179.97438 * 14 13 12 39 39 H 0.96995 * 119.99519 * 180.02562 * 19 18 16 40 40 H 1.08006 * 120.12595 * 359.69704 * 24 11 8 41 41 H 1.08996 * 109.46788 * 49.39184 * 27 25 7 42 42 H 1.09002 * 109.46926 * 169.39808 * 27 25 7 43 43 H 1.09000 * 109.46817 * 289.39551 * 27 25 7 44 44 H 1.08999 * 109.49660 * 61.43400 * 28 3 2 45 45 H 1.09001 * 109.52128 * 301.35183 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9990 0.5143 5 6 2.2161 1.7718 -1.4430 6 6 2.8059 3.1904 -1.4372 7 7 4.0302 3.1841 -0.6250 8 16 5.4571 3.7515 -1.2451 9 8 5.2788 3.8326 -2.6526 10 8 6.4904 2.9905 -0.6352 11 6 5.6532 5.4062 -0.6723 12 6 5.0352 6.4484 -1.3465 13 6 5.1812 7.7550 -0.9075 14 6 5.9435 8.0317 0.2045 15 6 6.5762 6.9823 0.8960 16 6 7.3613 7.2545 2.0400 17 1 8.1666 6.5888 2.3130 18 6 7.0949 8.3867 2.8183 19 7 5.9838 9.0546 2.6425 20 14 8.3256 8.9440 4.1082 21 1 9.2866 9.8967 3.4965 22 1 7.6066 9.6129 5.2221 23 1 9.0622 7.7655 4.6315 24 6 6.4196 5.6594 0.4420 25 6 3.9632 2.6704 0.7499 26 1 3.3356 3.3252 1.3544 27 6 5.3716 2.6123 1.3449 28 6 3.3593 1.2629 0.7215 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.9008 1.0926 -1.9508 33 1 1.2582 1.7790 -1.9631 34 1 2.0859 3.8867 -1.0074 35 1 3.0454 3.4921 -2.4569 36 1 4.4352 6.2404 -2.2201 37 1 4.6950 8.5589 -1.4401 38 1 6.0563 9.0505 0.5446 39 1 5.7993 9.8395 3.1818 40 1 6.8965 4.8457 0.9683 41 1 5.8743 3.5657 1.1823 42 1 5.3061 2.4138 2.4147 43 1 5.9376 1.8160 0.8616 44 1 4.0332 0.5884 0.1933 45 1 3.2155 0.9081 1.7420 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619682946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:15 Heat of formation + Delta-G solvation = -110.230026 kcal Electronic energy + Delta-G solvation = -28537.959394 eV Core-core repulsion = 24646.729796 eV Total energy + Delta-G solvation = -3891.229598 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.34705 -39.47312 -38.58900 -37.88826 -36.88204 -35.64788 -33.45944 -32.53196 -31.90987 -31.58354 -28.41579 -27.35614 -27.17833 -24.76324 -23.60103 -23.16714 -22.81847 -21.63843 -20.24879 -19.34927 -18.15962 -17.81519 -17.40029 -17.27973 -16.90328 -16.51934 -16.21691 -16.04507 -15.99217 -15.45203 -15.20641 -15.03285 -14.55671 -14.20946 -14.16927 -14.11364 -13.72947 -13.49205 -13.43164 -13.29366 -13.07682 -13.02879 -12.82248 -12.77714 -12.66339 -12.51078 -12.26392 -12.20476 -12.11456 -11.94175 -11.55631 -11.54766 -11.26276 -11.20703 -11.16955 -10.43964 -10.08693 -9.78704 -9.52487 -8.68354 -6.45988 -0.52396 0.41455 0.83993 1.38282 1.46267 1.50895 2.03612 2.18554 2.59119 2.76740 2.81533 3.39494 3.48152 3.58999 3.82336 3.99351 4.04538 4.22009 4.26323 4.32714 4.37931 4.41637 4.47727 4.58387 4.60427 4.71409 4.75643 4.77702 4.85428 4.89985 4.92615 4.93621 5.02042 5.08347 5.17256 5.19335 5.21882 5.33210 5.41412 5.54686 5.55746 5.71885 5.88643 5.96323 6.10802 6.31868 6.53909 6.81708 6.85392 8.28307 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016202 B = 0.003449 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.820085 B = 8116.877078 C = 8673.675250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.091 3.909 4 H 0.079 0.921 5 C -0.147 4.147 6 C 0.111 3.889 7 N -0.992 5.992 8 S 2.707 3.293 9 O -0.991 6.991 10 O -0.980 6.980 11 C -0.641 4.641 12 C -0.145 4.145 13 C -0.125 4.125 14 C -0.138 4.138 15 C 0.062 3.938 16 C -0.496 4.496 17 H 0.078 0.922 18 C 0.036 3.964 19 N -0.827 5.827 20 Si 0.983 3.017 21 H -0.263 1.263 22 H -0.266 1.266 23 H -0.259 1.259 24 C -0.141 4.141 25 C 0.159 3.841 26 H 0.089 0.911 27 C -0.193 4.193 28 C -0.119 4.119 29 H 0.051 0.949 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.115 0.885 39 H 0.290 0.710 40 H 0.119 0.881 41 H 0.057 0.943 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.066 0.934 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.393 -10.657 -1.691 15.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.324 6.324 3 C 0.033 3.967 4 H 0.097 0.903 5 C -0.186 4.186 6 C -0.013 4.013 7 N -0.832 5.832 8 S 2.803 3.197 9 O -0.982 6.982 10 O -0.971 6.971 11 C -0.730 4.730 12 C -0.166 4.166 13 C -0.144 4.144 14 C -0.157 4.157 15 C 0.059 3.941 16 C -0.525 4.525 17 H 0.096 0.904 18 C -0.178 4.178 19 N -0.453 5.453 20 Si 0.804 3.196 21 H -0.188 1.188 22 H -0.191 1.191 23 H -0.183 1.183 24 C -0.161 4.161 25 C 0.054 3.946 26 H 0.107 0.893 27 C -0.251 4.251 28 C -0.158 4.158 29 H 0.069 0.931 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.133 0.867 39 H 0.101 0.899 40 H 0.137 0.863 41 H 0.076 0.924 42 H 0.106 0.894 43 H 0.102 0.898 44 H 0.085 0.915 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.855 -11.093 -2.151 15.669 hybrid contribution 0.296 1.442 0.861 1.705 sum -10.559 -9.651 -1.291 14.363 Atomic orbital electron populations 1.22973 0.79721 1.03660 1.00875 1.87891 1.21260 1.28117 1.95178 1.22088 0.94639 0.84692 0.95258 0.90340 1.22428 1.02490 0.95792 0.97926 1.21762 0.85504 0.98091 0.95958 1.57681 1.25309 1.76726 1.23471 1.01226 0.72912 0.73479 0.72064 1.93450 1.86189 1.87903 1.30612 1.93596 1.57137 1.69288 1.77045 1.30349 1.11790 1.22453 1.08415 1.20434 1.03124 0.92484 1.00533 1.21145 0.99691 0.96627 0.96955 1.21716 0.99857 0.99484 0.94679 1.18059 0.92009 0.91367 0.92691 1.19845 1.15247 1.08818 1.08623 0.90401 1.26702 0.96626 0.94741 0.99769 1.69792 1.22432 1.15990 1.37117 0.85171 0.78244 0.79136 0.77036 1.18802 1.19054 1.18313 1.21009 1.01281 0.96756 0.97078 1.21074 0.97962 0.95035 0.80548 0.89298 1.22846 0.94828 1.04606 1.02840 1.21981 0.95746 0.95676 1.02377 0.93080 0.88731 0.93177 0.91801 0.88338 0.89150 0.88604 0.85354 0.85610 0.86685 0.89902 0.86331 0.92442 0.89436 0.89830 0.91529 0.88606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.82 113.37 1.23 1.54 16 2 O -0.41 -8.19 10.35 -148.98 -1.54 -9.73 16 3 C 0.09 1.77 2.57 30.62 0.08 1.85 16 4 H 0.08 1.29 7.79 -2.39 -0.02 1.27 16 5 C -0.15 -2.89 5.71 30.82 0.18 -2.71 16 6 C 0.11 2.56 6.53 86.51 0.56 3.13 16 7 N -0.99 -28.83 3.28 -489.99 -1.61 -30.44 16 8 S 2.71 101.21 5.23 -56.49 -0.30 100.92 16 9 O -0.99 -39.61 15.86 -128.00 -2.03 -41.64 16 10 O -0.98 -39.82 12.60 -128.00 -1.61 -41.43 16 11 C -0.64 -27.83 5.90 22.22 0.13 -27.69 16 12 C -0.15 -6.14 9.53 22.46 0.21 -5.92 16 13 C -0.13 -5.54 10.02 22.22 0.22 -5.32 16 14 C -0.14 -6.96 8.67 22.73 0.20 -6.76 16 15 C 0.06 3.26 5.57 -21.29 -0.12 3.14 16 16 C -0.50 -25.97 9.07 23.46 0.21 -25.76 16 17 H 0.08 3.97 7.88 -2.91 -0.02 3.95 16 18 C 0.04 1.76 5.23 85.26 0.45 2.20 16 19 N -0.83 -41.13 10.81 21.83 0.24 -40.89 16 20 Si 0.98 36.99 29.58 68.60 2.03 39.02 16 21 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 22 H -0.27 -9.45 7.11 99.48 0.71 -8.75 16 23 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 24 C -0.14 -6.79 8.35 22.73 0.19 -6.60 16 25 C 0.16 4.17 3.51 44.97 0.16 4.33 16 26 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 27 C -0.19 -5.88 7.59 71.98 0.55 -5.33 16 28 C -0.12 -2.61 5.01 30.67 0.15 -2.46 16 29 H 0.05 0.56 7.84 -2.39 -0.02 0.54 16 30 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.05 0.57 8.08 -2.39 -0.02 0.55 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.10 1.46 7.84 -2.39 -0.02 1.44 16 34 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.10 2.30 6.75 -2.39 -0.02 2.28 16 36 H 0.13 4.69 7.76 -2.91 -0.02 4.67 16 37 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 38 H 0.12 6.00 6.14 -2.91 -0.02 5.98 16 39 H 0.29 13.01 8.30 -92.71 -0.77 12.24 16 40 H 0.12 5.56 5.76 -2.91 -0.02 5.54 16 41 H 0.06 2.08 2.94 -2.39 -0.01 2.08 16 42 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.08 2.66 6.60 -2.39 -0.02 2.65 16 44 H 0.07 1.62 8.10 -2.39 -0.02 1.60 16 45 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -64.05 361.78 0.57 -63.47 By element: Atomic # 1 Polarization: 32.09 SS G_CDS: 1.00 Total: 33.09 kcal Atomic # 6 Polarization: -76.77 SS G_CDS: 4.40 Total: -72.37 kcal Atomic # 7 Polarization: -69.96 SS G_CDS: -1.37 Total: -71.33 kcal Atomic # 8 Polarization: -87.62 SS G_CDS: -5.18 Total: -92.80 kcal Atomic # 14 Polarization: 36.99 SS G_CDS: 2.03 Total: 39.02 kcal Atomic # 16 Polarization: 101.21 SS G_CDS: -0.30 Total: 100.92 kcal Total: -64.05 0.57 -63.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619682946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.756 kcal (2) G-P(sol) polarization free energy of solvation -64.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds