Wall clock time and date at job start Sat Apr 11 2020 05:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47073 * 2 1 4 4 C 1.52992 * 109.47521 * 119.99784 * 2 1 3 5 5 C 1.53000 * 109.47410 * 184.99906 * 4 2 1 6 6 S 1.81400 * 109.47066 * 180.02562 * 5 4 2 7 7 C 1.81404 * 102.99846 * 180.02562 * 6 5 4 8 8 O 1.42098 * 109.47147 * 63.61761 * 6 5 4 9 9 N 1.46499 * 109.47026 * 239.99930 * 2 1 3 10 10 C 1.34778 * 119.99795 * 84.99918 * 9 2 1 11 11 O 1.21279 * 120.00270 * 359.97438 * 10 9 2 12 12 C 1.50702 * 119.99847 * 180.02562 * 10 9 2 13 13 C 1.50701 * 109.47327 * 180.02562 * 12 10 9 14 14 C 1.38305 * 119.92899 * 269.72725 * 13 12 10 15 15 C 1.38099 * 120.06646 * 179.72272 * 14 13 12 16 16 C 1.38872 * 119.93271 * 0.56668 * 15 14 13 17 17 O 1.35751 * 120.07329 * 179.68142 * 16 15 14 18 18 C 1.34827 * 117.00427 * 174.48634 * 17 16 15 19 19 H 1.07999 * 119.99965 * 5.06385 * 18 17 16 20 20 C 1.38652 * 120.00185 * 185.05718 * 18 17 16 21 21 N 1.31555 * 120.00072 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00006 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47106 * 89.99906 * 22 20 18 24 24 H 1.48501 * 109.47190 * 209.99580 * 22 20 18 25 25 H 1.48494 * 109.47046 * 329.99916 * 22 20 18 26 26 C 1.38884 * 119.86208 * 359.70530 * 16 15 14 27 27 C 1.38095 * 119.92886 * 0.02562 * 26 16 15 28 28 H 1.08997 * 109.46757 * 299.99620 * 1 2 3 29 29 H 1.08994 * 109.47406 * 59.99932 * 1 2 3 30 30 H 1.09003 * 109.46841 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47310 * 65.00191 * 4 2 1 32 32 H 1.09003 * 109.47531 * 305.00116 * 4 2 1 33 33 H 1.09005 * 109.46898 * 60.00374 * 5 4 2 34 34 H 1.08998 * 109.47287 * 300.00254 * 5 4 2 35 35 H 1.09003 * 109.47120 * 299.99894 * 7 6 5 36 36 H 1.08993 * 109.47416 * 59.99926 * 7 6 5 37 37 H 1.09004 * 109.47284 * 180.02562 * 7 6 5 38 38 H 0.96998 * 120.00260 * 264.99722 * 9 2 1 39 39 H 1.09007 * 109.46997 * 299.99331 * 12 10 9 40 40 H 1.08999 * 109.47524 * 60.00073 * 12 10 9 41 41 H 1.08001 * 119.96749 * 359.97438 * 14 13 12 42 42 H 1.08003 * 120.03520 * 180.27682 * 15 14 13 43 43 H 0.97000 * 120.00166 * 180.02562 * 21 20 18 44 44 H 1.07996 * 120.03177 * 179.97438 * 26 16 15 45 45 H 1.07997 * 119.96553 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 1.2492 5 6 3.5649 -0.6132 1.3136 6 16 4.1697 -1.4689 2.7943 7 6 5.9657 -1.2336 2.6966 8 8 3.8670 -2.8539 2.6978 9 7 2.0183 -0.6906 -1.1962 10 6 2.1470 -0.0182 -2.3571 11 8 1.8581 1.1584 -2.4117 12 6 2.6488 -0.7288 -3.5878 13 6 2.7002 0.2397 -4.7412 14 6 1.5997 0.3904 -5.5652 15 6 1.6416 1.2813 -6.6196 16 6 2.7945 2.0176 -6.8592 17 8 2.8411 2.8893 -7.8988 18 6 3.9460 3.6544 -8.0071 19 1 4.7772 3.5008 -7.3348 20 6 4.0152 4.6382 -8.9816 21 7 5.0935 5.3844 -9.0875 22 14 2.5774 4.9043 -10.1441 23 1 1.6443 5.8996 -9.5576 24 1 3.0812 5.4062 -11.4477 25 1 1.8638 3.6186 -10.3509 26 6 3.8999 1.8598 -6.0333 27 6 3.8497 0.9714 -4.9772 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.7518 -1.7715 1.2056 32 1 1.6055 -0.2617 2.1370 33 1 3.8533 0.4371 1.3572 34 1 3.9995 -1.0727 0.4259 35 1 6.3406 -1.6770 1.7741 36 1 6.1936 -0.1679 2.7063 37 1 6.4423 -1.7152 3.5505 38 1 2.2491 -1.6318 -1.1526 39 1 3.6480 -1.1213 -3.3987 40 1 1.9759 -1.5506 -3.8326 41 1 0.7051 -0.1862 -5.3815 42 1 0.7804 1.4018 -7.2601 43 1 5.1418 6.0729 -9.7691 44 1 4.7979 2.4307 -6.2174 45 1 4.7091 0.8480 -4.3349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748367597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:24 Heat of formation + Delta-G solvation = -84.848701 kcal Electronic energy + Delta-G solvation = -26084.941407 eV Core-core repulsion = 22194.812426 eV Total energy + Delta-G solvation = -3890.128982 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.00212 -39.00061 -37.04840 -36.25723 -36.06992 -32.77677 -32.42118 -31.46668 -30.22607 -30.08314 -29.33792 -26.84790 -24.97975 -24.32677 -22.09560 -21.78271 -20.75987 -20.08285 -17.90819 -17.86051 -17.29000 -17.06517 -16.58927 -15.66408 -15.47035 -15.29904 -15.02631 -14.68239 -14.59204 -14.02380 -13.94419 -13.89985 -13.70014 -13.59887 -13.41364 -13.28173 -13.00805 -12.66025 -12.55326 -12.39161 -12.30765 -12.16912 -11.95242 -11.75209 -11.60715 -11.28104 -11.21478 -10.91103 -10.73502 -10.65084 -10.47459 -10.13311 -9.70478 -9.35754 -9.16742 -8.83381 -8.69311 -8.20747 -7.27624 -6.39098 -4.05399 1.06785 2.16126 2.18612 2.18705 2.75987 3.17063 3.24286 3.28295 3.34382 3.42487 4.26189 4.32039 4.45609 4.46863 4.54845 4.66956 4.78549 4.88201 4.97161 5.07000 5.13305 5.14284 5.19343 5.25332 5.28520 5.32739 5.46611 5.47698 5.59283 5.62250 5.67805 5.77869 5.83607 6.00281 6.15942 6.35940 6.41249 6.59557 6.82395 7.05251 7.25162 7.33404 7.45141 7.64906 7.83232 8.06854 8.31925 8.96374 9.59299 10.68658 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019697 B = 0.001958 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.208243 B =14299.223721 C =15008.623229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.146 3.854 3 H 0.091 0.909 4 C -0.106 4.106 5 C -0.448 4.448 6 S 1.239 4.761 7 C -0.489 4.489 8 O -0.854 6.854 9 N -0.736 5.736 10 C 0.510 3.490 11 O -0.519 6.519 12 C -0.083 4.083 13 C -0.160 4.160 14 C -0.062 4.062 15 C -0.191 4.191 16 C 0.162 3.838 17 O -0.218 6.218 18 C -0.388 4.388 19 H 0.106 0.894 20 C 0.062 3.938 21 N -0.881 5.881 22 Si 0.906 3.094 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.260 1.260 26 C -0.219 4.219 27 C -0.059 4.059 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.120 0.880 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.113 0.887 37 H 0.105 0.895 38 H 0.396 0.604 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.117 0.883 43 H 0.279 0.721 44 H 0.133 0.867 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.033 -13.231 25.873 29.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.040 3.960 3 H 0.109 0.891 4 C -0.145 4.145 5 C -0.585 4.585 6 S 1.438 4.562 7 C -0.647 4.647 8 O -0.849 6.849 9 N -0.390 5.390 10 C 0.297 3.703 11 O -0.393 6.393 12 C -0.123 4.123 13 C -0.161 4.161 14 C -0.080 4.080 15 C -0.210 4.210 16 C 0.110 3.890 17 O -0.123 6.123 18 C -0.464 4.464 19 H 0.123 0.877 20 C -0.141 4.141 21 N -0.519 5.519 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.238 4.238 27 C -0.077 4.077 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.138 0.862 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.132 0.868 37 H 0.124 0.876 38 H 0.229 0.771 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.128 0.872 42 H 0.135 0.865 43 H 0.089 0.911 44 H 0.150 0.850 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.778 -12.617 26.206 29.475 hybrid contribution 0.785 -1.011 -2.373 2.696 sum -3.993 -13.628 23.833 27.743 Atomic orbital electron populations 1.22192 0.95196 1.02086 1.02871 1.20906 0.93910 0.97646 0.83565 0.89099 1.21499 0.92282 1.01945 0.98808 1.27705 1.03029 1.11233 1.16577 1.70437 0.87749 0.94513 1.03502 1.27630 1.21228 1.08552 1.07292 1.93136 1.78695 1.30751 1.82365 1.46207 1.69086 1.13839 1.09899 1.20981 0.77417 0.87679 0.84254 1.90743 1.48123 1.15860 1.84578 1.20443 1.02512 0.97960 0.91415 1.18694 0.95833 1.03159 0.98439 1.20398 0.96567 0.97023 0.94030 1.20149 0.97203 1.01855 1.01781 1.19115 0.93193 0.89781 0.86935 1.83569 1.42005 1.45894 1.40850 1.20768 0.93128 1.13326 1.19167 0.87660 1.24467 0.97787 0.94413 0.97390 1.69647 1.27266 1.20571 1.34393 0.86175 0.81730 0.79560 0.79399 1.19874 1.20814 1.18382 1.21216 1.00182 1.03718 0.98687 1.20545 0.96431 0.94707 0.96014 0.91577 0.91703 0.92586 0.90891 0.89161 0.86173 0.89389 0.90082 0.86821 0.87641 0.77067 0.89133 0.88961 0.87236 0.86543 0.91094 0.84983 0.87674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.48 37.16 0.35 -1.00 16 2 C 0.15 1.21 2.57 -67.93 -0.17 1.04 16 3 H 0.09 0.92 7.58 -51.93 -0.39 0.52 16 4 C -0.11 -0.59 4.76 -26.74 -0.13 -0.72 16 5 C -0.45 -2.26 5.81 37.16 0.22 -2.05 16 6 S 1.24 5.38 13.80 -107.50 -1.48 3.89 16 7 C -0.49 -2.05 10.74 101.05 1.09 -0.97 16 8 O -0.85 -9.75 18.14 -35.23 -0.64 -10.39 16 9 N -0.74 -6.95 4.53 -53.81 -0.24 -7.19 16 10 C 0.51 6.80 7.79 -10.98 -0.09 6.71 16 11 O -0.52 -9.39 15.70 5.56 0.09 -9.31 16 12 C -0.08 -1.03 5.83 -29.03 -0.17 -1.20 16 13 C -0.16 -2.75 4.38 -104.57 -0.46 -3.21 16 14 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16 15 C -0.19 -3.97 9.99 -39.40 -0.39 -4.36 16 16 C 0.16 3.89 6.65 -39.11 -0.26 3.63 16 17 O -0.22 -5.93 8.59 0.05 0.00 -5.93 16 18 C -0.39 -11.21 9.95 30.89 0.31 -10.90 16 19 H 0.11 3.10 5.44 -52.49 -0.29 2.82 16 20 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 21 N -0.88 -25.84 13.96 55.48 0.77 -25.07 16 22 Si 0.91 22.12 28.62 -169.99 -4.86 17.26 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.26 -6.36 7.11 56.52 0.40 -5.96 16 26 C -0.22 -4.93 9.17 -39.39 -0.36 -5.29 16 27 C -0.06 -1.11 9.69 -39.61 -0.38 -1.50 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.12 0.42 8.14 -51.92 -0.42 0.00 16 34 H 0.09 0.59 7.75 -51.92 -0.40 0.19 16 35 H 0.08 0.49 8.14 -51.92 -0.42 0.06 16 36 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.10 0.40 8.14 -51.92 -0.42 -0.02 16 38 H 0.40 2.87 8.60 -40.82 -0.35 2.51 16 39 H 0.09 0.94 8.08 -51.92 -0.42 0.52 16 40 H 0.09 0.92 8.08 -51.93 -0.42 0.50 16 41 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.12 2.25 8.06 -52.48 -0.42 1.83 16 43 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.13 3.10 5.64 -52.49 -0.30 2.81 16 45 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 393.58 15.07 5.93 5.93 Total: -1.00 -39.17 393.58 -8.15 -47.32 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -6.78 Total: 3.10 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -0.93 Total: -19.60 kcal Atomic # 7 Polarization: -32.79 SS G_CDS: 0.53 Total: -32.26 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.55 Total: -25.63 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.86 Total: 17.26 kcal Atomic # 16 Polarization: 5.38 SS G_CDS: -1.48 Total: 3.89 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -39.17 -8.15 -47.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748367597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.534 kcal (2) G-P(sol) polarization free energy of solvation -39.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds