Wall clock time and date at job start Sat Apr 11 2020 05:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47339 * 2 1 4 4 C 1.53006 * 109.47358 * 239.99448 * 2 1 3 5 5 S 1.81407 * 109.47020 * 119.99958 * 2 1 3 6 6 O 1.42096 * 108.57637 * 305.51080 * 5 2 1 7 7 O 1.42104 * 108.57830 * 174.49030 * 5 2 1 8 8 C 1.81396 * 101.92166 * 60.00050 * 5 2 1 9 9 C 1.53001 * 109.46771 * 179.97438 * 8 5 2 10 10 N 1.46505 * 109.47046 * 179.97438 * 9 8 5 11 11 C 1.34771 * 120.00394 * 179.97438 * 10 9 8 12 12 O 1.21592 * 119.99579 * 0.02562 * 11 10 9 13 13 C 1.47642 * 120.00628 * 180.02562 * 11 10 9 14 14 C 1.40014 * 119.89046 * 0.25312 * 13 11 10 15 15 C 1.36315 * 120.10857 * 180.25454 * 14 13 11 16 16 C 1.40893 * 119.88481 * 359.47208 * 15 14 13 17 17 C 1.41114 * 120.09748 * 180.29801 * 16 15 14 18 18 H 1.08000 * 120.00330 * 335.06249 * 17 16 15 19 19 C 1.40223 * 119.99644 * 155.06801 * 17 16 15 20 20 N 1.30656 * 120.00207 * 342.19907 * 19 17 16 21 21 Si 1.86803 * 120.00199 * 162.20506 * 19 17 16 22 22 H 1.48503 * 109.47047 * 94.65856 * 21 19 17 23 23 H 1.48504 * 109.47089 * 214.65560 * 21 19 17 24 24 H 1.48498 * 109.46765 * 334.65988 * 21 19 17 25 25 C 1.40884 * 119.79739 * 0.28068 * 16 15 14 26 26 C 1.36315 * 119.88972 * 359.97438 * 25 16 15 27 27 H 1.09001 * 109.47109 * 300.00072 * 1 2 3 28 28 H 1.08995 * 109.46979 * 60.00556 * 1 2 3 29 29 H 1.09005 * 109.46715 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47123 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47035 * 299.99778 * 3 2 1 32 32 H 1.09001 * 109.47079 * 59.99910 * 3 2 1 33 33 H 1.08997 * 109.46976 * 300.00222 * 4 2 1 34 34 H 1.08998 * 109.46353 * 60.00085 * 4 2 1 35 35 H 1.08998 * 109.46886 * 179.97438 * 4 2 1 36 36 H 1.09000 * 109.47274 * 60.00058 * 8 5 2 37 37 H 1.09004 * 109.47000 * 299.99825 * 8 5 2 38 38 H 1.09000 * 109.47174 * 59.99997 * 9 8 5 39 39 H 1.08997 * 109.47509 * 299.99961 * 9 8 5 40 40 H 0.97008 * 119.99606 * 0.02562 * 10 9 8 41 41 H 1.08009 * 119.95054 * 0.02770 * 14 13 11 42 42 H 1.07993 * 120.05993 * 179.74600 * 15 14 13 43 43 H 0.96994 * 120.00294 * 179.97438 * 20 19 17 44 44 H 1.08003 * 120.05494 * 180.02562 * 25 16 15 45 45 H 1.07998 * 119.94660 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7214 -1.2492 5 16 2.1346 -0.8552 1.4812 6 8 1.5479 -0.2494 2.6248 7 8 3.5496 -0.9571 1.3992 8 6 1.4229 -2.5108 1.2748 9 6 1.8342 -3.3935 2.4549 10 7 1.2589 -4.7305 2.2886 11 6 1.4896 -5.6833 3.2135 12 8 2.1748 -5.4330 4.1862 13 6 0.9102 -7.0309 3.0456 14 6 0.1259 -7.3182 1.9219 15 6 -0.4154 -8.5594 1.7651 16 6 -0.1753 -9.5571 2.7305 17 6 -0.7282 -10.8453 2.5694 18 1 -1.6215 -10.9795 1.9774 19 6 -0.1179 -11.9513 3.1781 20 7 1.1188 -11.8696 3.5915 21 14 -1.0730 -13.5417 3.3979 22 1 -0.7893 -14.4509 2.2585 23 1 -0.6617 -14.1948 4.6666 24 1 -2.5270 -13.2435 3.4431 25 6 0.6189 -9.2647 3.8568 26 6 1.1516 -8.0191 4.0076 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7490 -1.2491 34 1 1.6767 -0.2076 -2.1391 35 1 3.1300 -0.7209 -1.2494 36 1 1.7894 -2.9509 0.3473 37 1 0.3360 -2.4370 1.2373 38 1 1.4681 -2.9536 3.3826 39 1 2.9211 -3.4672 2.4920 40 1 0.7125 -4.9302 1.5123 41 1 -0.0536 -6.5541 1.1799 42 1 -1.0236 -8.7789 0.9001 43 1 1.5409 -12.6346 4.0129 44 1 0.8060 -10.0265 4.5992 45 1 1.7602 -7.7938 4.8709 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759101928.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:29 Heat of formation + Delta-G solvation = -104.390254 kcal Electronic energy + Delta-G solvation = -26496.835864 eV Core-core repulsion = 22605.859497 eV Total energy + Delta-G solvation = -3890.976367 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.18968 -37.31632 -37.22775 -37.08198 -36.31288 -35.07676 -33.92437 -31.31983 -30.01524 -29.39491 -27.97722 -27.95697 -26.03308 -23.75431 -22.11346 -21.75873 -20.83586 -19.86989 -18.73901 -17.59864 -17.27311 -17.10605 -16.45642 -16.18151 -15.53654 -15.39053 -15.21872 -14.73289 -14.59437 -14.10030 -13.93623 -13.76518 -13.66501 -13.26246 -12.97242 -12.92913 -12.80511 -12.47273 -12.46061 -12.35300 -12.24110 -12.22662 -11.94232 -11.81954 -11.77791 -11.72478 -11.41225 -11.27983 -11.21463 -11.01426 -10.66234 -10.49594 -10.10531 -9.58127 -9.36069 -9.05556 -8.76511 -7.73987 -7.60900 -7.05254 -4.63627 -0.41445 2.18835 2.35319 2.87740 2.93588 2.98644 3.00229 3.18338 3.56774 3.71646 3.75855 3.82065 3.94664 4.00054 4.21045 4.35246 4.48826 4.55536 4.91145 4.93269 4.97677 5.09155 5.12357 5.14285 5.20462 5.47440 5.47723 5.52138 5.55316 5.56576 5.60436 5.89816 6.02105 6.25236 6.73990 6.77151 6.82739 7.01938 7.05953 7.40010 7.56813 7.72424 7.83659 8.01161 8.15566 8.39597 8.59382 8.71745 8.98348 9.86703 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.029567 B = 0.001981 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.783484 B =14130.259556 C =14640.732800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.538 4.538 3 C -0.138 4.138 4 C -0.143 4.143 5 S 2.425 3.575 6 O -0.930 6.930 7 O -0.930 6.930 8 C -0.634 4.634 9 C 0.138 3.862 10 N -0.738 5.738 11 C 0.570 3.430 12 O -0.568 6.568 13 C -0.284 4.284 14 C -0.049 4.049 15 C -0.235 4.235 16 C 0.128 3.872 17 C -0.441 4.441 18 H 0.085 0.915 19 C 0.073 3.927 20 N -0.768 5.768 21 Si 0.913 3.087 22 H -0.267 1.267 23 H -0.272 1.272 24 H -0.257 1.257 25 C -0.182 4.182 26 C -0.035 4.035 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.399 0.601 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.288 0.712 44 H 0.121 0.879 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.027 18.377 -10.622 21.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.629 4.629 3 C -0.196 4.196 4 C -0.201 4.201 5 S 2.606 3.394 6 O -0.927 6.927 7 O -0.927 6.927 8 C -0.762 4.762 9 C 0.012 3.988 10 N -0.393 5.393 11 C 0.365 3.635 12 O -0.449 6.449 13 C -0.289 4.289 14 C -0.068 4.068 15 C -0.254 4.254 16 C 0.125 3.875 17 C -0.469 4.469 18 H 0.103 0.897 19 C -0.149 4.149 20 N -0.390 5.390 21 Si 0.737 3.263 22 H -0.192 1.192 23 H -0.197 1.197 24 H -0.181 1.181 25 C -0.201 4.201 26 C -0.054 4.054 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.159 0.841 37 H 0.159 0.841 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.235 0.765 41 H 0.107 0.893 42 H 0.115 0.885 43 H 0.099 0.901 44 H 0.139 0.861 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.796 18.748 -9.137 20.871 hybrid contribution -1.113 -1.115 -1.152 1.951 sum -1.909 17.633 -10.289 20.504 Atomic orbital electron populations 1.21846 0.89402 1.03820 1.05024 1.29743 1.06632 1.08904 1.17597 1.21721 1.02125 0.91102 1.04640 1.21848 1.02619 1.00092 0.95545 1.08205 0.76249 0.77747 0.77234 1.93588 1.79299 1.74495 1.45300 1.93591 1.26757 1.85754 1.86556 1.30710 1.14429 1.22290 1.08751 1.20737 0.99646 0.83683 0.94719 1.45831 1.55737 1.10411 1.27336 1.18672 0.79058 0.84703 0.81069 1.90664 1.40922 1.82283 1.31069 1.18850 1.14361 0.93121 1.02526 1.20342 0.95789 0.95836 0.94869 1.20656 1.09247 0.94763 1.00783 1.17795 0.88269 0.92267 0.89200 1.19837 1.09794 0.91252 1.26003 0.89718 1.26123 0.94405 1.01632 0.92718 1.69748 1.10718 1.32495 1.26081 0.86206 0.81123 0.80139 0.78871 1.19244 1.19678 1.18092 1.21014 1.04200 0.95478 0.99456 1.20487 0.96103 0.92495 0.96326 0.90281 0.90093 0.91015 0.90757 0.89924 0.90763 0.91005 0.90096 0.90269 0.84068 0.84076 0.90378 0.90366 0.76540 0.89346 0.88467 0.90097 0.86125 0.88069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.68 8.22 37.16 0.31 -0.37 16 2 C -0.54 -3.30 0.87 -90.62 -0.08 -3.38 16 3 C -0.14 -0.80 8.48 37.16 0.32 -0.49 16 4 C -0.14 -0.69 8.22 37.16 0.31 -0.38 16 5 S 2.43 23.88 3.76 -107.50 -0.40 23.48 16 6 O -0.93 -12.09 17.91 -57.83 -1.04 -13.13 16 7 O -0.93 -12.15 17.91 -57.83 -1.04 -13.19 16 8 C -0.63 -5.46 5.01 37.16 0.19 -5.28 16 9 C 0.14 1.92 5.68 -4.04 -0.02 1.89 16 10 N -0.74 -11.81 5.50 -61.31 -0.34 -12.15 16 11 C 0.57 12.13 7.76 -12.42 -0.10 12.03 16 12 O -0.57 -13.86 16.32 5.28 0.09 -13.77 16 13 C -0.28 -6.42 5.89 -104.73 -0.62 -7.03 16 14 C -0.05 -1.02 9.47 -39.61 -0.38 -1.39 16 15 C -0.24 -5.30 9.73 -39.27 -0.38 -5.68 16 16 C 0.13 3.21 5.57 -106.80 -0.60 2.62 16 17 C -0.44 -10.80 9.04 -37.75 -0.34 -11.14 16 18 H 0.08 1.95 7.91 -52.49 -0.42 1.54 16 19 C 0.07 1.70 5.13 -17.31 -0.09 1.61 16 20 N -0.77 -18.60 10.97 55.56 0.61 -17.99 16 21 Si 0.91 17.15 29.60 -169.99 -5.03 12.12 16 22 H -0.27 -4.95 7.11 56.52 0.40 -4.54 16 23 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 24 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 25 C -0.18 -4.62 8.63 -39.27 -0.34 -4.96 16 26 C -0.03 -0.85 9.52 -39.61 -0.38 -1.22 16 27 H 0.08 0.41 8.06 -51.93 -0.42 -0.01 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.24 6.55 -51.93 -0.34 -0.10 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.24 6.55 -51.93 -0.34 -0.10 16 34 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.42 8.06 -51.93 -0.42 0.00 16 36 H 0.14 0.85 6.87 -51.92 -0.36 0.49 16 37 H 0.14 0.83 6.87 -51.92 -0.36 0.48 16 38 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.40 5.20 6.47 -40.82 -0.26 4.94 16 41 H 0.09 1.44 6.37 -52.48 -0.33 1.11 16 42 H 0.10 2.00 8.06 -52.49 -0.42 1.57 16 43 H 0.29 6.28 8.29 -40.82 -0.34 5.94 16 44 H 0.12 3.13 6.17 -52.48 -0.32 2.80 16 45 H 0.10 2.44 7.63 -52.49 -0.40 2.04 16 LS Contribution 381.42 15.07 5.75 5.75 Total: -1.00 -33.71 381.42 -10.09 -43.80 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -6.49 Total: 8.25 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: -2.20 Total: -23.17 kcal Atomic # 7 Polarization: -30.41 SS G_CDS: 0.27 Total: -30.14 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -1.99 Total: -40.09 kcal Atomic # 14 Polarization: 17.15 SS G_CDS: -5.03 Total: 12.12 kcal Atomic # 16 Polarization: 23.88 SS G_CDS: -0.40 Total: 23.48 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.71 -10.09 -43.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759101928.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.591 kcal (2) G-P(sol) polarization free energy of solvation -33.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds