Wall clock time and date at job start Sat Apr 11 2020 05:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47339 * 2 1 4 4 C 1.53006 * 109.47358 * 239.99448 * 2 1 3 5 5 S 1.81407 * 109.47020 * 119.99958 * 2 1 3 6 6 O 1.42096 * 108.57637 * 305.51080 * 5 2 1 7 7 O 1.42104 * 108.57830 * 174.49030 * 5 2 1 8 8 C 1.81396 * 101.92166 * 60.00050 * 5 2 1 9 9 C 1.53001 * 109.46771 * 179.97438 * 8 5 2 10 10 N 1.46505 * 109.47046 * 179.97438 * 9 8 5 11 11 C 1.34771 * 120.00394 * 179.97438 * 10 9 8 12 12 O 1.21592 * 119.99579 * 0.02562 * 11 10 9 13 13 C 1.47642 * 120.00628 * 180.02562 * 11 10 9 14 14 C 1.40014 * 119.89046 * 0.25312 * 13 11 10 15 15 C 1.36315 * 120.10857 * 180.25454 * 14 13 11 16 16 C 1.40893 * 119.88481 * 359.47208 * 15 14 13 17 17 C 1.41114 * 120.09748 * 180.29801 * 16 15 14 18 18 H 1.08000 * 120.00330 * 335.06249 * 17 16 15 19 19 C 1.40223 * 119.99644 * 155.06801 * 17 16 15 20 20 N 1.30656 * 120.00207 * 342.19907 * 19 17 16 21 21 Si 1.86803 * 120.00199 * 162.20506 * 19 17 16 22 22 H 1.48503 * 109.47047 * 94.65856 * 21 19 17 23 23 H 1.48504 * 109.47089 * 214.65560 * 21 19 17 24 24 H 1.48498 * 109.46765 * 334.65988 * 21 19 17 25 25 C 1.40884 * 119.79739 * 0.28068 * 16 15 14 26 26 C 1.36315 * 119.88972 * 359.97438 * 25 16 15 27 27 H 1.09001 * 109.47109 * 300.00072 * 1 2 3 28 28 H 1.08995 * 109.46979 * 60.00556 * 1 2 3 29 29 H 1.09005 * 109.46715 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47123 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47035 * 299.99778 * 3 2 1 32 32 H 1.09001 * 109.47079 * 59.99910 * 3 2 1 33 33 H 1.08997 * 109.46976 * 300.00222 * 4 2 1 34 34 H 1.08998 * 109.46353 * 60.00085 * 4 2 1 35 35 H 1.08998 * 109.46886 * 179.97438 * 4 2 1 36 36 H 1.09000 * 109.47274 * 60.00058 * 8 5 2 37 37 H 1.09004 * 109.47000 * 299.99825 * 8 5 2 38 38 H 1.09000 * 109.47174 * 59.99997 * 9 8 5 39 39 H 1.08997 * 109.47509 * 299.99961 * 9 8 5 40 40 H 0.97008 * 119.99606 * 0.02562 * 10 9 8 41 41 H 1.08009 * 119.95054 * 0.02770 * 14 13 11 42 42 H 1.07993 * 120.05993 * 179.74600 * 15 14 13 43 43 H 0.96994 * 120.00294 * 179.97438 * 20 19 17 44 44 H 1.08003 * 120.05494 * 180.02562 * 25 16 15 45 45 H 1.07998 * 119.94660 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7214 -1.2492 5 16 2.1346 -0.8552 1.4812 6 8 1.5479 -0.2494 2.6248 7 8 3.5496 -0.9571 1.3992 8 6 1.4229 -2.5108 1.2748 9 6 1.8342 -3.3935 2.4549 10 7 1.2589 -4.7305 2.2886 11 6 1.4896 -5.6833 3.2135 12 8 2.1748 -5.4330 4.1862 13 6 0.9102 -7.0309 3.0456 14 6 0.1259 -7.3182 1.9219 15 6 -0.4154 -8.5594 1.7651 16 6 -0.1753 -9.5571 2.7305 17 6 -0.7282 -10.8453 2.5694 18 1 -1.6215 -10.9795 1.9774 19 6 -0.1179 -11.9513 3.1781 20 7 1.1188 -11.8696 3.5915 21 14 -1.0730 -13.5417 3.3979 22 1 -0.7893 -14.4509 2.2585 23 1 -0.6617 -14.1948 4.6666 24 1 -2.5270 -13.2435 3.4431 25 6 0.6189 -9.2647 3.8568 26 6 1.1516 -8.0191 4.0076 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7490 -1.2491 34 1 1.6767 -0.2076 -2.1391 35 1 3.1300 -0.7209 -1.2494 36 1 1.7894 -2.9509 0.3473 37 1 0.3360 -2.4370 1.2373 38 1 1.4681 -2.9536 3.3826 39 1 2.9211 -3.4672 2.4920 40 1 0.7125 -4.9302 1.5123 41 1 -0.0536 -6.5541 1.1799 42 1 -1.0236 -8.7789 0.9001 43 1 1.5409 -12.6346 4.0129 44 1 0.8060 -10.0265 4.5992 45 1 1.7602 -7.7938 4.8709 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759101928.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:28 Heat of formation + Delta-G solvation = -128.368741 kcal Electronic energy + Delta-G solvation = -26497.875649 eV Core-core repulsion = 22605.859497 eV Total energy + Delta-G solvation = -3892.016152 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.84163 -38.96172 -38.16974 -37.55401 -37.15921 -36.44765 -35.69602 -32.67880 -31.74759 -31.02100 -28.49769 -28.29605 -27.68289 -24.93483 -23.60562 -22.72985 -22.37705 -21.48122 -19.54163 -19.36092 -18.65523 -17.99549 -17.29608 -17.17140 -17.07359 -16.63393 -16.39410 -15.75051 -15.57846 -15.31081 -15.10906 -15.02968 -14.83845 -14.44271 -14.35176 -14.01172 -13.66331 -13.43541 -13.41532 -13.27369 -13.26176 -13.22298 -13.15040 -12.93147 -12.81207 -12.66705 -12.51821 -12.35348 -12.28038 -12.14274 -11.97682 -11.79370 -11.36441 -11.11589 -11.10769 -10.73725 -10.22171 -9.56984 -9.42411 -8.79669 -6.48365 -1.14334 0.42080 1.16004 1.37692 1.42361 1.55196 1.66490 2.08186 2.16764 2.20059 2.65207 2.77652 2.92576 3.33451 3.47266 3.49700 3.68719 3.79173 3.94900 4.17075 4.26663 4.34295 4.41200 4.44409 4.58742 4.59947 4.65519 4.71381 4.79171 4.81781 4.84728 4.97665 5.02117 5.11065 5.20459 5.23937 5.25169 5.29710 5.38799 5.58794 5.78182 5.94940 6.01643 6.19826 6.56046 6.67080 6.76359 6.89504 7.37611 8.15373 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.029567 B = 0.001981 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.783484 B =14130.259556 C =14640.732800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.502 4.502 3 C -0.150 4.150 4 C -0.153 4.153 5 S 2.404 3.596 6 O -0.975 6.975 7 O -0.976 6.976 8 C -0.622 4.622 9 C 0.126 3.874 10 N -0.714 5.714 11 C 0.567 3.433 12 O -0.609 6.609 13 C -0.295 4.295 14 C -0.035 4.035 15 C -0.244 4.244 16 C 0.100 3.900 17 C -0.468 4.468 18 H 0.095 0.905 19 C 0.032 3.968 20 N -0.803 5.803 21 Si 0.989 3.011 22 H -0.258 1.258 23 H -0.269 1.269 24 H -0.252 1.252 25 C -0.204 4.204 26 C -0.051 4.051 27 H 0.071 0.929 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.109 0.891 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.070 0.930 36 H 0.177 0.823 37 H 0.178 0.822 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.417 0.583 41 H 0.142 0.858 42 H 0.120 0.880 43 H 0.295 0.705 44 H 0.102 0.898 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.327 18.970 -14.208 24.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.597 4.597 3 C -0.208 4.208 4 C -0.211 4.211 5 S 2.591 3.409 6 O -0.972 6.972 7 O -0.973 6.973 8 C -0.751 4.751 9 C 0.001 3.999 10 N -0.368 5.368 11 C 0.361 3.639 12 O -0.494 6.494 13 C -0.299 4.299 14 C -0.054 4.054 15 C -0.263 4.263 16 C 0.096 3.904 17 C -0.495 4.495 18 H 0.113 0.887 19 C -0.187 4.187 20 N -0.427 5.427 21 Si 0.808 3.192 22 H -0.182 1.182 23 H -0.194 1.194 24 H -0.176 1.176 25 C -0.223 4.223 26 C -0.071 4.071 27 H 0.090 0.910 28 H 0.121 0.879 29 H 0.111 0.889 30 H 0.086 0.914 31 H 0.128 0.872 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.121 0.879 35 H 0.089 0.911 36 H 0.194 0.806 37 H 0.195 0.805 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.256 0.744 41 H 0.159 0.841 42 H 0.138 0.862 43 H 0.106 0.894 44 H 0.120 0.880 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.086 19.365 -12.725 23.376 hybrid contribution -0.372 -1.155 -0.109 1.218 sum -3.459 18.210 -12.834 22.545 Atomic orbital electron populations 1.22039 0.87662 1.05577 1.05781 1.29439 1.07717 1.08092 1.14493 1.21901 1.02026 0.91201 1.05713 1.22040 1.02380 1.01469 0.95190 1.08540 0.75488 0.78386 0.78453 1.93530 1.79495 1.75404 1.48777 1.93532 1.29672 1.86466 1.87601 1.30622 1.16787 1.19954 1.07717 1.20853 0.98890 0.83218 0.96966 1.45543 1.54709 1.10171 1.26407 1.18574 0.78707 0.85188 0.81453 1.90645 1.42735 1.82965 1.33023 1.19099 1.14635 0.93444 1.02746 1.20730 0.93521 0.96408 0.94695 1.20961 1.09595 0.94913 1.00860 1.18180 0.88716 0.93735 0.89726 1.20167 1.10443 0.91709 1.27203 0.88733 1.27052 0.94976 1.04965 0.91708 1.69807 1.12303 1.33924 1.26638 0.85084 0.79535 0.75587 0.78970 1.18238 1.19372 1.17574 1.20926 1.05905 0.95465 1.00033 1.20552 0.96455 0.93156 0.96925 0.91047 0.87855 0.88885 0.91353 0.87211 0.91314 0.88901 0.87852 0.91096 0.80573 0.80469 0.91690 0.91828 0.74365 0.84083 0.86175 0.89386 0.87985 0.89373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 8.22 71.98 0.59 -0.22 16 2 C -0.50 -4.67 0.87 -10.79 -0.01 -4.68 16 3 C -0.15 -1.45 8.48 71.98 0.61 -0.84 16 4 C -0.15 -0.84 8.22 71.98 0.59 -0.25 16 5 S 2.40 45.45 3.76 -56.49 -0.21 45.23 16 6 O -0.97 -25.92 17.91 -127.37 -2.28 -28.20 16 7 O -0.98 -26.13 17.91 -127.37 -2.28 -28.41 16 8 C -0.62 -8.82 5.01 71.98 0.36 -8.46 16 9 C 0.13 3.37 5.68 86.38 0.49 3.86 16 10 N -0.71 -21.24 5.50 -466.15 -2.57 -23.81 16 11 C 0.57 23.95 7.76 86.73 0.67 24.62 16 12 O -0.61 -30.61 16.32 -4.01 -0.07 -30.67 16 13 C -0.29 -13.23 5.89 -19.93 -0.12 -13.35 16 14 C -0.03 -1.35 9.47 22.25 0.21 -1.14 16 15 C -0.24 -10.61 9.73 22.47 0.22 -10.39 16 16 C 0.10 5.06 5.57 -21.28 -0.12 4.94 16 17 C -0.47 -22.99 9.04 23.46 0.21 -22.78 16 18 H 0.09 4.30 7.91 -2.91 -0.02 4.27 16 19 C 0.03 1.48 5.13 85.35 0.44 1.92 16 20 N -0.80 -39.98 10.97 21.87 0.24 -39.74 16 21 Si 0.99 34.83 29.60 68.60 2.03 36.86 16 22 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 23 H -0.27 -9.26 7.11 99.48 0.71 -8.55 16 24 H -0.25 -8.61 7.11 99.48 0.71 -7.91 16 25 C -0.20 -10.79 8.63 22.47 0.19 -10.60 16 26 C -0.05 -2.62 9.52 22.25 0.21 -2.40 16 27 H 0.07 0.54 8.06 -2.39 -0.02 0.52 16 28 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 29 H 0.09 0.11 6.55 -2.38 -0.02 0.09 16 30 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.09 0.13 6.55 -2.39 -0.02 0.11 16 34 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 35 H 0.07 0.56 8.06 -2.39 -0.02 0.54 16 36 H 0.18 1.26 6.87 -2.39 -0.02 1.24 16 37 H 0.18 1.22 6.87 -2.39 -0.02 1.21 16 38 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.42 9.03 6.47 -92.70 -0.60 8.43 16 41 H 0.14 3.86 6.37 -2.91 -0.02 3.85 16 42 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 43 H 0.30 13.19 8.29 -92.71 -0.77 12.43 16 44 H 0.10 5.64 6.17 -2.91 -0.02 5.62 16 45 H 0.09 4.57 7.63 -2.91 -0.02 4.55 16 Total: -1.00 -79.21 381.42 -0.17 -79.38 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: 0.41 Total: 29.12 kcal Atomic # 6 Polarization: -44.33 SS G_CDS: 4.56 Total: -39.77 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: -2.33 Total: -63.55 kcal Atomic # 8 Polarization: -82.65 SS G_CDS: -4.63 Total: -87.28 kcal Atomic # 14 Polarization: 34.83 SS G_CDS: 2.03 Total: 36.86 kcal Atomic # 16 Polarization: 45.45 SS G_CDS: -0.21 Total: 45.23 kcal Total: -79.21 -0.17 -79.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759101928.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.987 kcal (2) G-P(sol) polarization free energy of solvation -79.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds