Wall clock time and date at job start Sat Apr 11 2020 05:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47142 * 2 1 4 4 C 1.52992 * 109.47283 * 120.00725 * 2 1 3 5 5 C 1.53005 * 109.47385 * 184.99886 * 4 2 1 6 6 S 1.81397 * 109.47229 * 179.97438 * 5 4 2 7 7 C 1.81404 * 102.99696 * 179.97438 * 6 5 4 8 8 O 1.42099 * 109.47077 * 296.38389 * 6 5 4 9 9 N 1.46511 * 109.46930 * 240.00248 * 2 1 3 10 10 C 1.34773 * 119.99751 * 84.99866 * 9 2 1 11 11 O 1.21285 * 120.00390 * 359.72651 * 10 9 2 12 12 C 1.50702 * 119.99636 * 179.72519 * 10 9 2 13 13 C 1.50700 * 109.46913 * 180.02562 * 12 10 9 14 14 C 1.38325 * 119.96816 * 269.72347 * 13 12 10 15 15 C 1.38279 * 120.14228 * 179.76724 * 14 13 12 16 16 C 1.38122 * 120.06291 * 0.51000 * 15 14 13 17 17 C 1.38853 * 119.93227 * 359.74827 * 16 15 14 18 18 O 1.35753 * 120.06784 * 179.97438 * 17 16 15 19 19 C 1.34829 * 117.00003 * 354.48910 * 18 17 16 20 20 H 1.08000 * 120.00141 * 5.05394 * 19 18 17 21 21 C 1.38663 * 120.00175 * 185.05809 * 19 18 17 22 22 N 1.31552 * 119.99860 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 119.99666 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47386 * 90.00017 * 23 21 19 25 25 H 1.48507 * 109.46888 * 210.00176 * 23 21 19 26 26 H 1.48504 * 109.47435 * 329.99736 * 23 21 19 27 27 C 1.38079 * 119.96613 * 90.00409 * 13 12 10 28 28 H 1.08993 * 109.47142 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46697 * 299.99824 * 1 2 3 30 30 H 1.08998 * 109.47009 * 59.99748 * 1 2 3 31 31 H 1.09003 * 109.47251 * 304.99290 * 4 2 1 32 32 H 1.08999 * 109.47911 * 64.99303 * 4 2 1 33 33 H 1.08998 * 109.46488 * 299.99429 * 5 4 2 34 34 H 1.09002 * 109.46834 * 59.99637 * 5 4 2 35 35 H 1.08996 * 109.47070 * 60.00012 * 7 6 5 36 36 H 1.09001 * 109.47025 * 180.02562 * 7 6 5 37 37 H 1.09004 * 109.47141 * 299.99609 * 7 6 5 38 38 H 0.96994 * 119.99724 * 264.72648 * 9 2 1 39 39 H 1.08998 * 109.47222 * 300.00141 * 12 10 9 40 40 H 1.08999 * 109.47062 * 60.00281 * 12 10 9 41 41 H 1.08005 * 119.92701 * 0.02562 * 14 13 12 42 42 H 1.07995 * 119.96749 * 180.25475 * 15 14 13 43 43 H 1.08009 * 120.03132 * 179.72158 * 16 15 14 44 44 H 0.96997 * 119.99685 * 179.97438 * 22 21 19 45 45 H 1.08001 * 120.03569 * 359.94714 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5649 -0.6134 1.3135 6 16 4.1695 -1.4681 2.7949 7 6 5.9657 -1.2343 2.6963 8 8 3.6696 -0.8168 3.9547 9 7 2.0183 -0.6906 -1.1963 10 6 2.1470 -0.0182 -2.3572 11 8 1.8538 1.1574 -2.4129 12 6 2.6552 -0.7271 -3.5862 13 6 2.7052 0.2412 -4.7399 14 6 1.6065 0.3872 -5.5675 15 6 1.6467 1.2781 -6.6243 16 6 2.7887 2.0175 -6.8629 17 6 3.8951 1.8693 -6.0371 18 8 5.0191 2.5942 -6.2694 19 6 5.0380 3.3544 -7.3828 20 1 4.1547 3.4312 -7.9993 21 6 6.1917 4.0377 -7.7363 22 7 6.2102 4.7790 -8.8229 23 14 7.7194 3.9054 -6.6696 24 1 8.5500 2.7651 -7.1336 25 1 8.5037 5.1624 -6.7703 26 1 7.3191 3.6835 -5.2569 27 6 3.8497 0.9774 -4.9733 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6055 -0.2619 2.1369 32 1 1.7517 -1.7716 1.2055 33 1 3.9994 -1.0730 0.4258 34 1 3.8533 0.4368 1.3573 35 1 6.1944 -0.1686 2.7048 36 1 6.4422 -1.7154 3.5505 37 1 6.3399 -1.6789 1.7741 38 1 2.2528 -1.6307 -1.1518 39 1 3.6555 -1.1150 -3.3943 40 1 1.9866 -1.5519 -3.8323 41 1 0.7138 -0.1929 -5.3854 42 1 0.7858 1.3928 -7.2662 43 1 2.8211 2.7099 -7.6912 44 1 7.0171 5.2572 -9.0700 45 1 4.7086 0.8604 -4.3290 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760631623.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:37 Heat of formation + Delta-G solvation = -115.614745 kcal Electronic energy + Delta-G solvation = -26266.879801 eV Core-core repulsion = 22375.416703 eV Total energy + Delta-G solvation = -3891.463097 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.19377 -40.52608 -38.44573 -37.32677 -36.79583 -34.49138 -33.80508 -32.98646 -31.14024 -30.81936 -29.72155 -28.32795 -27.16966 -25.01436 -23.44995 -22.90876 -21.81513 -21.35370 -19.65975 -18.89028 -18.35805 -18.00832 -17.28877 -16.85001 -16.75981 -16.28935 -15.97820 -15.77657 -15.72487 -15.64434 -15.52504 -15.09320 -14.71345 -14.54401 -14.42581 -14.24208 -14.14286 -13.89529 -13.76863 -13.54003 -13.14733 -13.03076 -12.84288 -12.76657 -12.55929 -12.50165 -12.43484 -12.32277 -12.14404 -11.93795 -11.88867 -11.31342 -11.07024 -10.93567 -10.81344 -10.01591 -9.64723 -9.20170 -9.05467 -8.51338 -6.24028 0.50518 0.67573 0.71342 1.28061 1.33020 1.49410 1.77198 1.79261 2.26508 2.29904 2.79152 2.89422 3.06276 3.15927 3.76189 3.81926 3.93143 4.04219 4.09142 4.23609 4.26775 4.32091 4.39646 4.47662 4.50165 4.53698 4.58124 4.69212 4.73664 4.74735 4.80643 4.92561 4.99368 5.10567 5.15306 5.18515 5.27256 5.33000 5.39641 5.63804 5.66324 5.74166 5.76883 5.91867 6.26600 6.74422 6.83024 7.46474 7.58395 8.60686 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011546 B = 0.002462 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.409701 B =11369.826122 C =13280.224210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.045 0.955 4 C -0.102 4.102 5 C -0.452 4.452 6 S 1.310 4.690 7 C -0.494 4.494 8 O -0.931 6.931 9 N -0.706 5.706 10 C 0.512 3.488 11 O -0.585 6.585 12 C -0.090 4.090 13 C -0.027 4.027 14 C -0.171 4.171 15 C -0.080 4.080 16 C -0.243 4.243 17 C 0.117 3.883 18 O -0.247 6.247 19 C -0.400 4.400 20 H 0.079 0.921 21 C 0.008 3.992 22 N -0.925 5.925 23 Si 0.972 3.028 24 H -0.259 1.259 25 H -0.267 1.267 26 H -0.268 1.268 27 C -0.181 4.181 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.034 0.966 31 H 0.067 0.933 32 H 0.127 0.873 33 H 0.149 0.851 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.112 0.888 37 H 0.145 0.855 38 H 0.423 0.577 39 H 0.132 0.868 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.138 0.862 43 H 0.104 0.896 44 H 0.285 0.715 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.773 -25.248 21.616 33.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.063 0.937 4 C -0.141 4.141 5 C -0.589 4.589 6 S 1.511 4.489 7 C -0.652 4.652 8 O -0.927 6.927 9 N -0.360 5.360 10 C 0.300 3.700 11 O -0.465 6.465 12 C -0.129 4.129 13 C -0.027 4.027 14 C -0.189 4.189 15 C -0.098 4.098 16 C -0.263 4.263 17 C 0.068 3.932 18 O -0.155 6.155 19 C -0.476 4.476 20 H 0.096 0.904 21 C -0.190 4.190 22 N -0.566 5.566 23 Si 0.794 3.206 24 H -0.184 1.184 25 H -0.192 1.192 26 H -0.192 1.192 27 C -0.201 4.201 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.145 0.855 33 H 0.167 0.833 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.130 0.870 37 H 0.164 0.836 38 H 0.262 0.738 39 H 0.150 0.850 40 H 0.164 0.836 41 H 0.167 0.833 42 H 0.156 0.844 43 H 0.122 0.878 44 H 0.094 0.906 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.172 -24.728 22.316 34.072 hybrid contribution 1.294 3.217 -0.400 3.490 sum -5.878 -21.511 21.915 31.266 Atomic orbital electron populations 1.22149 0.94755 1.03542 1.01513 1.20830 0.94236 0.96174 0.84756 0.93664 1.21499 0.92186 1.04168 0.96259 1.27777 1.03454 1.09453 1.18245 1.69438 0.84485 1.13344 0.81662 1.27688 1.20630 1.06263 1.10668 1.93005 1.76039 1.78885 1.44761 1.45831 1.67180 1.14910 1.08123 1.20995 0.76804 0.86748 0.85495 1.90774 1.51228 1.18860 1.85592 1.20737 1.06490 0.97386 0.88273 1.19291 0.91951 0.95904 0.95595 1.21036 0.99126 1.02039 0.96749 1.21115 0.96297 0.94652 0.97759 1.21313 0.95564 1.05993 1.03396 1.19630 0.86547 0.91601 0.95397 1.83502 1.35570 1.54197 1.42271 1.20711 1.01039 1.25347 1.00514 0.90398 1.25297 1.01356 0.94862 0.97445 1.69731 1.31059 1.30816 1.24977 0.85201 0.77718 0.78565 0.79091 1.18378 1.19212 1.19242 1.20301 1.00865 0.99938 0.98954 0.89468 0.91589 0.94640 0.91402 0.85508 0.83285 0.92433 0.92315 0.86972 0.83619 0.73767 0.84960 0.83607 0.83329 0.84407 0.87765 0.90571 0.85899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.48 71.98 0.68 -1.67 16 2 C 0.15 2.19 2.57 44.99 0.12 2.30 16 3 H 0.05 1.08 7.58 -2.39 -0.02 1.06 16 4 C -0.10 -0.88 4.76 30.59 0.15 -0.73 16 5 C -0.45 -3.80 5.81 71.98 0.42 -3.38 16 6 S 1.31 9.46 13.80 -56.49 -0.78 8.68 16 7 C -0.49 -3.47 10.74 113.37 1.22 -2.25 16 8 O -0.93 -22.23 18.14 -148.98 -2.70 -24.93 16 9 N -0.71 -8.32 4.53 -442.53 -2.01 -10.33 16 10 C 0.51 11.12 7.79 87.66 0.68 11.80 16 11 O -0.59 -20.69 15.70 -3.05 -0.05 -20.74 16 12 C -0.09 -1.54 5.83 29.10 0.17 -1.37 16 13 C -0.03 -0.82 4.37 -19.88 -0.09 -0.91 16 14 C -0.17 -5.26 9.70 22.30 0.22 -5.05 16 15 C -0.08 -2.94 10.04 22.25 0.22 -2.72 16 16 C -0.24 -11.43 9.17 22.39 0.21 -11.22 16 17 C 0.12 5.79 6.65 22.57 0.15 5.94 16 18 O -0.25 -14.11 8.59 -22.77 -0.20 -14.31 16 19 C -0.40 -24.56 9.95 67.92 0.68 -23.89 16 20 H 0.08 5.03 5.44 -2.91 -0.02 5.02 16 21 C 0.01 0.50 5.49 84.84 0.47 0.97 16 22 N -0.92 -56.76 13.96 21.62 0.30 -56.46 16 23 Si 0.97 46.74 28.62 68.60 1.96 48.70 16 24 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 25 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 26 H -0.27 -13.03 7.11 99.48 0.71 -12.33 16 27 C -0.18 -7.23 9.64 22.39 0.22 -7.01 16 28 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.13 -0.04 8.14 -2.39 -0.02 -0.06 16 33 H 0.15 0.31 7.75 -2.39 -0.02 0.30 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.15 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.42 0.72 8.60 -92.71 -0.80 -0.08 16 39 H 0.13 1.50 8.08 -2.39 -0.02 1.48 16 40 H 0.15 1.26 8.08 -2.39 -0.02 1.24 16 41 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 42 H 0.14 4.18 8.06 -2.91 -0.02 4.15 16 43 H 0.10 5.37 5.64 -2.91 -0.02 5.35 16 44 H 0.28 15.97 8.31 -92.71 -0.77 15.20 16 45 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -98.42 393.58 2.23 -96.19 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.20 Total: 12.38 kcal Atomic # 6 Polarization: -44.68 SS G_CDS: 5.50 Total: -39.18 kcal Atomic # 7 Polarization: -65.09 SS G_CDS: -1.70 Total: -66.79 kcal Atomic # 8 Polarization: -57.04 SS G_CDS: -2.95 Total: -59.98 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.96 Total: 48.70 kcal Atomic # 16 Polarization: 9.46 SS G_CDS: -0.78 Total: 8.68 kcal Total: -98.42 2.23 -96.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760631623.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.422 kcal (2) G-P(sol) polarization free energy of solvation -98.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds