Wall clock time and date at job start Sat Apr 11 2020 05:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.46620 * 2 1 4 4 C 1.52993 * 109.46853 * 119.99589 * 2 1 3 5 5 C 1.53001 * 109.47174 * 185.00063 * 4 2 1 6 6 S 1.81402 * 109.47302 * 180.02562 * 5 4 2 7 7 C 1.81395 * 102.99844 * 180.02562 * 6 5 4 8 8 O 1.42094 * 109.47048 * 63.61309 * 6 5 4 9 9 N 1.46497 * 109.47013 * 239.99789 * 2 1 3 10 10 C 1.34779 * 120.00029 * 85.00238 * 9 2 1 11 11 O 1.21280 * 119.99730 * 359.97438 * 10 9 2 12 12 C 1.50697 * 119.99832 * 179.97438 * 10 9 2 13 13 C 1.50703 * 109.47029 * 180.02562 * 12 10 9 14 14 C 1.38326 * 119.96036 * 269.72148 * 13 12 10 15 15 C 1.38280 * 120.13593 * 180.27023 * 14 13 12 16 16 C 1.38125 * 120.06813 * 0.02562 * 15 14 13 17 17 C 1.38857 * 119.92941 * 359.97438 * 16 15 14 18 18 O 1.35759 * 120.06714 * 179.97438 * 17 16 15 19 19 C 1.34831 * 116.99718 * 354.48542 * 18 17 16 20 20 H 1.07998 * 120.00057 * 5.06548 * 19 18 17 21 21 C 1.38654 * 119.99581 * 185.05723 * 19 18 17 22 22 N 1.31561 * 120.00320 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99982 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46759 * 60.00279 * 23 21 19 25 25 H 1.48492 * 109.47092 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47168 * 300.00453 * 23 21 19 27 27 C 1.38074 * 119.96544 * 90.00097 * 13 12 10 28 28 H 1.08992 * 109.47211 * 300.00613 * 1 2 3 29 29 H 1.09003 * 109.46639 * 60.00062 * 1 2 3 30 30 H 1.08998 * 109.46620 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47623 * 305.00299 * 4 2 1 32 32 H 1.08999 * 109.47169 * 65.00444 * 4 2 1 33 33 H 1.08998 * 109.47331 * 300.00159 * 5 4 2 34 34 H 1.08999 * 109.46761 * 60.00131 * 5 4 2 35 35 H 1.09003 * 109.47558 * 60.00018 * 7 6 5 36 36 H 1.09007 * 109.47235 * 180.02562 * 7 6 5 37 37 H 1.09000 * 109.47444 * 299.99727 * 7 6 5 38 38 H 0.97001 * 119.99807 * 264.99679 * 9 2 1 39 39 H 1.08996 * 109.47426 * 60.00133 * 12 10 9 40 40 H 1.08994 * 109.47220 * 299.99909 * 12 10 9 41 41 H 1.07995 * 119.93590 * 0.26096 * 14 13 12 42 42 H 1.07998 * 119.96668 * 180.02562 * 15 14 13 43 43 H 1.08000 * 120.03457 * 179.97438 * 16 15 14 44 44 H 0.96999 * 119.99759 * 180.02562 * 22 21 19 45 45 H 1.08000 * 120.03806 * 359.69747 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6132 1.3138 6 16 4.1695 -1.4689 2.7946 7 6 5.9655 -1.2336 2.6970 8 8 3.8668 -2.8539 2.6981 9 7 2.0184 -0.6906 -1.1961 10 6 2.1471 -0.0183 -2.3571 11 8 1.8583 1.1583 -2.4117 12 6 2.6500 -0.7287 -3.5874 13 6 2.7012 0.2398 -4.7409 14 6 1.6013 0.3901 -5.5661 15 6 1.6462 1.2735 -6.6289 16 6 2.7906 2.0084 -6.8700 17 6 3.8964 1.8597 -6.0434 18 8 5.0229 2.5803 -6.2781 19 6 5.0444 3.3363 -7.3943 20 1 4.1613 3.4136 -8.0112 21 6 6.2003 4.0145 -7.7500 22 7 7.2761 3.9199 -6.9987 23 14 6.2300 5.0625 -9.2961 24 1 5.2052 6.1318 -9.1890 25 1 7.5728 5.6769 -9.4518 26 1 5.9357 4.2113 -10.4768 27 6 3.8480 0.9718 -4.9764 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.6054 -0.2616 2.1370 32 1 1.7517 -1.7714 1.2056 33 1 3.9995 -1.0727 0.4261 34 1 3.8531 0.4371 1.3574 35 1 6.1935 -0.1677 2.7066 36 1 6.4420 -1.7152 3.5509 37 1 6.3405 -1.6770 1.7745 38 1 2.2491 -1.6318 -1.1525 39 1 1.9778 -1.5509 -3.8325 40 1 3.6493 -1.1205 -3.3978 41 1 0.7055 -0.1838 -5.3800 42 1 0.7857 1.3890 -7.2712 43 1 2.8253 2.6980 -7.7005 44 1 8.0845 4.3947 -7.2474 45 1 4.7064 0.8542 -4.3316 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760631624.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:39 Heat of formation + Delta-G solvation = -116.889068 kcal Electronic energy + Delta-G solvation = -26236.722451 eV Core-core repulsion = 22345.204095 eV Total energy + Delta-G solvation = -3891.518356 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.20768 -40.48274 -38.37618 -37.33092 -36.76263 -34.36232 -33.81939 -33.01038 -31.05558 -30.73467 -29.72222 -28.39599 -27.24738 -25.00263 -23.39074 -23.04441 -21.87830 -21.43018 -19.51653 -18.80865 -18.36005 -18.11210 -17.29916 -16.81951 -16.62900 -16.17366 -16.14479 -15.96655 -15.82114 -15.53812 -15.42965 -15.12701 -14.74260 -14.62561 -14.35447 -14.14891 -14.01801 -13.81874 -13.59458 -13.52728 -13.10221 -12.96447 -12.85617 -12.76947 -12.55214 -12.47173 -12.41551 -12.25618 -12.20762 -12.14115 -11.83778 -11.23038 -11.07916 -10.90691 -10.79305 -10.06874 -9.66198 -9.17480 -9.00164 -8.48215 -6.17022 0.49759 0.67232 0.73421 1.33050 1.44418 1.49789 1.67635 1.77810 2.16742 2.25083 2.83884 2.89426 3.16264 3.41659 3.76187 3.81394 3.92037 4.02667 4.07176 4.15748 4.26597 4.28854 4.38189 4.43803 4.49951 4.53659 4.56099 4.59090 4.70854 4.74408 4.84488 4.89507 5.03157 5.10533 5.11670 5.14649 5.20126 5.28265 5.34869 5.59504 5.62900 5.70374 5.72945 6.01202 6.20740 6.56700 6.96121 7.30814 7.77202 8.75170 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.002241 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.267395 B =12490.761559 C =13997.059763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.140 3.860 3 H 0.072 0.928 4 C -0.102 4.102 5 C -0.455 4.455 6 S 1.306 4.694 7 C -0.495 4.495 8 O -0.923 6.923 9 N -0.717 5.717 10 C 0.516 3.484 11 O -0.573 6.573 12 C -0.095 4.095 13 C -0.024 4.024 14 C -0.182 4.182 15 C -0.073 4.073 16 C -0.247 4.247 17 C 0.113 3.887 18 O -0.234 6.234 19 C -0.416 4.416 20 H 0.100 0.900 21 C -0.024 4.024 22 N -0.922 5.922 23 Si 1.020 2.980 24 H -0.258 1.258 25 H -0.270 1.270 26 H -0.256 1.256 27 C -0.193 4.193 28 H 0.087 0.913 29 H 0.034 0.966 30 H 0.067 0.933 31 H 0.125 0.875 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.112 0.888 37 H 0.061 0.939 38 H 0.410 0.590 39 H 0.139 0.861 40 H 0.115 0.885 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.119 0.881 44 H 0.273 0.727 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.570 -10.641 20.916 26.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.035 3.965 3 H 0.090 0.910 4 C -0.141 4.141 5 C -0.592 4.592 6 S 1.506 4.494 7 C -0.653 4.653 8 O -0.919 6.919 9 N -0.370 5.370 10 C 0.303 3.697 11 O -0.452 6.452 12 C -0.135 4.135 13 C -0.025 4.025 14 C -0.200 4.200 15 C -0.091 4.091 16 C -0.266 4.266 17 C 0.063 3.937 18 O -0.141 6.141 19 C -0.492 4.492 20 H 0.118 0.882 21 C -0.221 4.221 22 N -0.561 5.561 23 Si 0.839 3.161 24 H -0.182 1.182 25 H -0.194 1.194 26 H -0.181 1.181 27 C -0.213 4.213 28 H 0.106 0.894 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.143 0.857 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.156 0.844 35 H 0.157 0.843 36 H 0.131 0.869 37 H 0.080 0.920 38 H 0.246 0.754 39 H 0.157 0.843 40 H 0.133 0.867 41 H 0.163 0.837 42 H 0.164 0.836 43 H 0.137 0.863 44 H 0.082 0.918 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.861 -10.227 21.736 26.790 hybrid contribution 1.648 -0.567 -2.828 3.322 sum -10.214 -10.795 18.907 24.048 Atomic orbital electron populations 1.22152 0.94495 1.02700 1.02503 1.21072 0.94455 0.97019 0.83955 0.91006 1.21530 0.92335 1.01672 0.98572 1.27773 1.03090 1.12295 1.16026 1.69668 0.86807 0.91242 1.01658 1.27689 1.20668 1.10327 1.06604 1.92997 1.80478 1.34753 1.83696 1.46060 1.67411 1.14410 1.09168 1.20776 0.76859 0.86853 0.85212 1.90743 1.50960 1.17979 1.85503 1.20717 1.05436 0.97801 0.89527 1.19162 0.92252 0.95670 0.95419 1.20953 0.98721 1.03003 0.97327 1.21136 0.96486 0.94198 0.97243 1.21300 0.95032 1.06549 1.03696 1.19861 0.87454 0.91364 0.95042 1.83937 1.34093 1.53568 1.42474 1.21797 1.00353 1.26010 1.01025 0.88240 1.26619 0.93403 0.99093 1.02950 1.70185 1.02897 1.42906 1.40071 0.84639 0.78465 0.77611 0.75419 1.18240 1.19420 1.18058 1.20180 1.00246 1.01120 0.99710 0.89373 0.94650 0.91385 0.85724 0.91115 0.91195 0.84441 0.84274 0.86935 0.91992 0.75373 0.84323 0.86724 0.83698 0.83625 0.86318 0.91818 0.87787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.48 71.99 0.68 -1.73 16 2 C 0.14 2.30 2.57 44.99 0.12 2.41 16 3 H 0.07 1.51 7.58 -2.39 -0.02 1.49 16 4 C -0.10 -1.02 4.76 30.59 0.15 -0.87 16 5 C -0.45 -4.66 5.81 71.98 0.42 -4.24 16 6 S 1.31 11.48 13.80 -56.49 -0.78 10.70 16 7 C -0.49 -4.47 10.74 113.37 1.22 -3.25 16 8 O -0.92 -21.80 18.14 -148.98 -2.70 -24.50 16 9 N -0.72 -13.45 4.53 -442.54 -2.00 -15.46 16 10 C 0.52 14.14 7.79 87.66 0.68 14.82 16 11 O -0.57 -21.88 15.70 -3.03 -0.05 -21.93 16 12 C -0.10 -2.38 5.83 29.10 0.17 -2.21 16 13 C -0.02 -0.88 4.37 -19.88 -0.09 -0.97 16 14 C -0.18 -6.18 9.70 22.30 0.22 -5.96 16 15 C -0.07 -2.71 10.04 22.25 0.22 -2.49 16 16 C -0.25 -11.56 9.17 22.39 0.21 -11.35 16 17 C 0.11 6.04 6.65 22.58 0.15 6.19 16 18 O -0.23 -14.82 9.76 -22.85 -0.22 -15.05 16 19 C -0.42 -25.26 9.49 67.92 0.64 -24.62 16 20 H 0.10 5.56 5.20 -2.91 -0.02 5.55 16 21 C -0.02 -1.38 5.49 84.83 0.47 -0.91 16 22 N -0.92 -58.14 13.67 21.61 0.30 -57.85 16 23 Si 1.02 44.08 29.55 68.60 2.03 46.11 16 24 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 26 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 27 C -0.19 -8.93 9.64 22.39 0.22 -8.72 16 28 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 1.02 7.75 -2.39 -0.02 1.00 16 34 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.14 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.41 5.56 8.60 -92.71 -0.80 4.76 16 39 H 0.14 2.34 8.08 -2.39 -0.02 2.32 16 40 H 0.11 2.49 8.08 -2.39 -0.02 2.48 16 41 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 42 H 0.15 4.27 8.06 -2.91 -0.02 4.24 16 43 H 0.12 5.59 5.64 -2.91 -0.02 5.58 16 44 H 0.27 15.72 8.31 -92.71 -0.77 14.94 16 45 H 0.10 4.81 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -96.25 394.70 2.23 -94.01 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: 0.20 Total: 27.87 kcal Atomic # 6 Polarization: -49.38 SS G_CDS: 5.47 Total: -43.91 kcal Atomic # 7 Polarization: -71.59 SS G_CDS: -1.71 Total: -73.30 kcal Atomic # 8 Polarization: -58.50 SS G_CDS: -2.97 Total: -61.47 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: 11.48 SS G_CDS: -0.78 Total: 10.70 kcal Total: -96.25 2.23 -94.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760631624.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.877 kcal (2) G-P(sol) polarization free energy of solvation -96.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds