Wall clock time and date at job start Sat Apr 11 2020 05:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47345 * 2 1 4 4 H 1.09003 * 109.47220 * 306.40632 * 3 2 1 5 5 C 1.52996 * 109.47137 * 66.40395 * 3 2 1 6 6 C 1.50701 * 109.47189 * 183.69993 * 5 3 2 7 7 C 1.38235 * 119.99995 * 88.31519 * 6 5 3 8 8 C 1.38244 * 119.99993 * 180.02562 * 7 6 5 9 9 C 1.38234 * 119.99873 * 0.02562 * 8 7 6 10 10 C 1.38241 * 120.00009 * 0.25240 * 9 8 7 11 11 C 1.38228 * 119.99804 * 359.48849 * 10 9 8 12 12 C 1.50703 * 109.47616 * 186.40492 * 3 2 1 13 13 O 1.21282 * 119.99670 * 323.42975 * 12 3 2 14 14 N 1.34776 * 120.00204 * 143.42038 * 12 3 2 15 15 S 1.65604 * 119.99894 * 180.02562 * 14 12 3 16 16 O 1.42101 * 104.27346 * 181.07298 * 15 14 12 17 17 O 1.42099 * 104.27798 * 308.93613 * 15 14 12 18 18 C 1.81402 * 104.44557 * 65.00539 * 15 14 12 19 19 C 1.53005 * 109.46796 * 180.02562 * 18 15 14 20 20 C 1.50697 * 109.46966 * 180.02562 * 19 18 15 21 21 H 1.08000 * 120.00075 * 359.97438 * 20 19 18 22 22 C 1.37878 * 120.00223 * 179.97438 * 20 19 18 23 23 N 1.31519 * 119.99703 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00436 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47086 * 90.00115 * 24 22 20 26 26 H 1.48498 * 109.47302 * 209.99806 * 24 22 20 27 27 H 1.48500 * 109.47254 * 330.00204 * 24 22 20 28 28 H 1.09001 * 109.46553 * 294.31986 * 1 2 3 29 29 H 1.08997 * 109.46739 * 54.31872 * 1 2 3 30 30 H 1.09003 * 109.47120 * 174.32361 * 1 2 3 31 31 H 1.09005 * 109.47076 * 239.99574 * 2 1 3 32 32 H 1.09003 * 109.47153 * 119.99931 * 2 1 3 33 33 H 1.09001 * 109.47408 * 63.70395 * 5 3 2 34 34 H 1.08998 * 109.47441 * 303.70129 * 5 3 2 35 35 H 1.07994 * 120.00009 * 359.97438 * 7 6 5 36 36 H 1.07992 * 119.99975 * 179.97438 * 8 7 6 37 37 H 1.08001 * 120.00217 * 179.97438 * 9 8 7 38 38 H 1.08004 * 119.99853 * 179.73034 * 10 9 8 39 39 H 1.08005 * 119.99927 * 180.23490 * 11 10 9 40 40 H 0.97003 * 119.99909 * 0.02562 * 14 12 3 41 41 H 1.09001 * 109.47120 * 299.99690 * 18 15 14 42 42 H 1.08999 * 109.47197 * 59.99931 * 18 15 14 43 43 H 1.09001 * 109.46968 * 299.99704 * 19 18 15 44 44 H 1.08999 * 109.47369 * 59.99957 * 19 18 15 45 45 H 0.97005 * 119.99970 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5861 1.9883 -0.8271 5 6 1.6657 2.1157 1.3219 6 6 2.0876 3.5620 1.2861 7 6 1.2280 4.5205 0.7827 8 6 1.6152 5.8472 0.7494 9 6 2.8621 6.2152 1.2190 10 6 3.7240 5.2559 1.7170 11 6 3.3347 3.9301 1.7553 12 6 3.5387 1.4454 -0.1585 13 8 4.2059 0.5804 0.3683 14 7 4.1375 2.4093 -0.8857 15 16 5.7843 2.4122 -1.0604 16 8 6.0509 3.5630 -1.8502 17 8 6.2778 2.3047 0.2678 18 6 6.1428 0.9005 -1.9968 19 6 7.6515 0.7875 -2.2248 20 6 7.9492 -0.4681 -3.0032 21 1 7.1431 -1.1204 -3.3049 22 6 9.2508 -0.7840 -3.3305 23 7 10.2325 0.0106 -2.9636 24 14 9.6200 -2.3406 -4.2948 25 1 9.5894 -2.0411 -5.7489 26 1 10.9654 -2.8466 -3.9220 27 1 8.5987 -3.3718 -3.9803 28 1 -0.3632 0.4232 0.9365 29 1 -0.3633 0.5994 -0.8347 30 1 -0.3633 -1.0227 -0.1016 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.1724 1.6098 2.1437 34 1 0.5872 2.0553 1.4678 35 1 0.2543 4.2328 0.4147 36 1 0.9438 6.5959 0.3558 37 1 3.1649 7.2516 1.1926 38 1 4.6999 5.5429 2.0799 39 1 4.0066 3.1812 2.1479 40 1 3.6039 3.1013 -1.3068 41 1 5.7947 0.0338 -1.4348 42 1 5.6314 0.9390 -2.9587 43 1 8.0000 1.6541 -2.7866 44 1 8.1624 0.7487 -1.2627 45 1 11.1483 -0.2118 -3.1935 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776114957.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:45 Heat of formation + Delta-G solvation = -111.467574 kcal Electronic energy + Delta-G solvation = -27987.295163 eV Core-core repulsion = 24096.011900 eV Total energy + Delta-G solvation = -3891.283262 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.65603 -39.14624 -36.71090 -35.90635 -35.57322 -34.37095 -33.88836 -32.35851 -31.17995 -31.03196 -28.83732 -25.76341 -25.57413 -22.96091 -22.72587 -21.66043 -21.61249 -20.33019 -19.21404 -17.88475 -17.54988 -17.00389 -16.49755 -15.96304 -15.58563 -15.39614 -15.09826 -15.00344 -14.67337 -14.52434 -14.47393 -13.81853 -13.54259 -13.39831 -13.15787 -12.89595 -12.64841 -12.55161 -12.39170 -12.10273 -11.94011 -11.79005 -11.69437 -11.58505 -11.52930 -11.13922 -11.07965 -11.04799 -10.98359 -10.92262 -10.78579 -10.41297 -10.34110 -10.03938 -9.69559 -9.17365 -9.07578 -8.88857 -8.49432 -6.11660 -4.17129 0.53438 1.14274 1.24086 2.12622 2.77955 3.27290 3.33375 3.36815 3.59146 3.99279 4.16535 4.28881 4.38005 4.59666 4.63787 4.71459 4.77740 4.86145 4.89318 4.98535 5.07733 5.09786 5.14578 5.23581 5.30317 5.34601 5.43900 5.54702 5.59300 5.63158 5.73196 5.77122 5.79652 5.90437 5.93269 6.04473 6.29612 6.39850 6.44161 6.46237 6.68898 6.84173 7.28487 7.35180 7.51435 7.81347 8.17225 8.85720 9.47345 10.99499 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015098 B = 0.003356 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.163171 B = 8341.102349 C = 9683.000078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.101 4.101 4 H 0.098 0.902 5 C -0.071 4.071 6 C -0.097 4.097 7 C -0.117 4.117 8 C -0.122 4.122 9 C -0.120 4.120 10 C -0.116 4.116 11 C -0.112 4.112 12 C 0.540 3.460 13 O -0.489 6.489 14 N -1.055 6.055 15 S 2.563 3.437 16 O -0.955 6.955 17 O -0.937 6.937 18 C -0.577 4.577 19 C 0.030 3.970 20 C -0.519 4.519 21 H 0.062 0.938 22 C 0.058 3.942 23 N -0.890 5.890 24 Si 0.901 3.099 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.272 1.272 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.427 0.573 41 H 0.131 0.869 42 H 0.120 0.880 43 H 0.033 0.967 44 H 0.036 0.964 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.555 7.923 7.022 25.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.124 4.124 4 H 0.116 0.884 5 C -0.109 4.109 6 C -0.097 4.097 7 C -0.135 4.135 8 C -0.140 4.140 9 C -0.138 4.138 10 C -0.134 4.134 11 C -0.130 4.130 12 C 0.326 3.674 13 O -0.360 6.360 14 N -0.816 5.816 15 S 2.663 3.337 16 O -0.946 6.946 17 O -0.927 6.927 18 C -0.712 4.712 19 C -0.009 4.009 20 C -0.558 4.558 21 H 0.080 0.920 22 C -0.145 4.145 23 N -0.528 5.528 24 Si 0.728 3.272 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.197 1.197 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.262 0.738 41 H 0.149 0.851 42 H 0.139 0.861 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.325 8.003 7.797 24.964 hybrid contribution -0.118 -0.774 -1.137 1.380 sum -22.442 7.229 6.660 24.500 Atomic orbital electron populations 1.21822 0.94962 1.02179 1.01966 1.21479 0.96081 0.93470 1.04164 1.21536 0.91079 0.99529 1.00277 0.88375 1.20647 1.02700 0.91253 0.96261 1.19907 0.94687 0.95342 0.99812 1.21013 0.99426 0.92833 1.00183 1.21136 0.96603 0.96132 1.00115 1.21216 0.94237 0.99592 0.98804 1.21272 0.99792 0.93119 0.99188 1.21297 0.95795 0.96754 0.99157 1.20595 0.91679 0.79437 0.75705 1.90898 1.66022 1.35276 1.43787 1.55444 1.31312 1.35963 1.58892 1.06736 0.72229 0.78303 0.76394 1.93586 1.81711 1.47258 1.72032 1.93583 1.76496 1.87398 1.35254 1.30357 1.11255 1.17209 1.12379 1.18985 0.83095 0.99830 0.99024 1.20976 0.92773 1.06622 1.35477 0.91964 1.25068 0.96180 0.97259 0.95968 1.69959 0.99825 1.37281 1.45783 0.86444 0.77819 0.82860 0.80030 1.20453 1.20964 1.19700 0.92341 0.92522 0.92184 0.90968 0.90146 0.89711 0.89030 0.85992 0.86077 0.86044 0.85763 0.85565 0.73772 0.85084 0.86142 0.94832 0.94602 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.56 37.16 0.36 -0.54 16 2 C -0.11 -0.95 4.97 -26.73 -0.13 -1.09 16 3 C -0.10 -0.90 2.18 -91.78 -0.20 -1.10 16 4 H 0.10 0.65 8.09 -51.93 -0.42 0.23 16 5 C -0.07 -0.59 4.70 -27.88 -0.13 -0.72 16 6 C -0.10 -0.94 4.74 -104.62 -0.50 -1.44 16 7 C -0.12 -0.96 9.71 -39.58 -0.38 -1.34 16 8 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 9 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 10 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 11 C -0.11 -1.35 8.56 -39.58 -0.34 -1.69 16 12 C 0.54 7.22 5.38 -10.98 -0.06 7.16 16 13 O -0.49 -8.39 14.54 -11.59 -0.17 -8.55 16 14 N -1.06 -14.26 5.17 31.22 0.16 -14.10 16 15 S 2.56 48.22 5.11 -107.50 -0.55 47.67 16 16 O -0.96 -19.62 18.08 -57.54 -1.04 -20.66 16 17 O -0.94 -20.54 17.04 -64.79 -1.10 -21.65 16 18 C -0.58 -11.81 5.82 37.16 0.22 -11.59 16 19 C 0.03 0.79 4.98 -27.88 -0.14 0.65 16 20 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 21 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 22 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 23 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 24 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 28 H 0.06 0.30 6.80 -51.93 -0.35 -0.06 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.75 8.06 -51.93 -0.42 0.33 16 33 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 34 H 0.09 0.54 6.53 -51.93 -0.34 0.20 16 35 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 37 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 38 H 0.12 1.37 8.06 -52.48 -0.42 0.94 16 39 H 0.13 1.72 8.06 -52.48 -0.42 1.29 16 40 H 0.43 4.35 8.75 -34.48 -0.30 4.05 16 41 H 0.13 2.62 7.19 -51.92 -0.37 2.25 16 42 H 0.12 2.13 8.14 -51.92 -0.42 1.71 16 43 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 388.08 15.07 5.85 5.85 Total: -1.00 -36.42 388.08 -10.87 -47.28 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.82 Total: 3.60 kcal Atomic # 6 Polarization: -26.95 SS G_CDS: -2.91 Total: -29.87 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.90 Total: -40.15 kcal Atomic # 8 Polarization: -48.55 SS G_CDS: -2.31 Total: -50.86 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 48.22 SS G_CDS: -0.55 Total: 47.67 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.42 -10.87 -47.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776114957.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.184 kcal (2) G-P(sol) polarization free energy of solvation -36.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds