Wall clock time and date at job start Sat Apr 11 2020 05:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46713 * 2 1 4 4 H 1.08999 * 109.47197 * 305.00045 * 3 2 1 5 5 C 1.52995 * 109.47072 * 184.99912 * 3 2 1 6 6 S 1.81400 * 109.47419 * 64.99571 * 3 2 1 7 7 O 1.42107 * 110.53904 * 68.37535 * 6 3 2 8 8 O 1.42098 * 110.54494 * 291.62778 * 6 3 2 9 9 N 1.65601 * 104.45278 * 179.97438 * 6 3 2 10 10 C 1.34777 * 119.99506 * 64.99689 * 9 6 3 11 11 O 1.21283 * 120.00046 * 0.02562 * 10 9 6 12 12 C 1.50698 * 119.99686 * 179.97438 * 10 9 6 13 13 C 1.53005 * 109.46990 * 180.02562 * 12 10 9 14 14 H 1.08994 * 109.46934 * 305.97546 * 13 12 10 15 15 C 1.50700 * 109.47299 * 65.97885 * 13 12 10 16 16 H 1.08008 * 119.99531 * 26.90748 * 15 13 12 17 17 C 1.37869 * 120.00160 * 206.90965 * 15 13 12 18 18 N 1.31508 * 120.00032 * 353.27812 * 17 15 13 19 19 Si 1.86806 * 120.00073 * 173.54969 * 17 15 13 20 20 H 1.48497 * 109.46895 * 179.72442 * 19 17 15 21 21 H 1.48495 * 109.46957 * 299.72695 * 19 17 15 22 22 H 1.48501 * 109.46761 * 59.72686 * 19 17 15 23 23 C 1.50705 * 109.47056 * 185.97689 * 13 12 10 24 24 C 1.38237 * 120.00118 * 294.44966 * 23 13 12 25 25 C 1.38237 * 119.99818 * 179.78603 * 24 23 13 26 26 C 1.38236 * 120.00003 * 0.44191 * 25 24 23 27 27 C 1.38236 * 119.99991 * 359.81061 * 26 25 24 28 28 C 1.38228 * 119.99825 * 114.71859 * 23 13 12 29 29 H 1.09001 * 109.47050 * 60.00375 * 1 2 3 30 30 H 1.09007 * 109.46448 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47375 * 300.00001 * 1 2 3 32 32 H 1.09001 * 109.47375 * 239.99999 * 2 1 3 33 33 H 1.09001 * 109.47050 * 119.99625 * 2 1 3 34 34 H 1.09002 * 109.47339 * 299.99615 * 5 3 2 35 35 H 1.09001 * 109.47169 * 59.99582 * 5 3 2 36 36 H 1.09000 * 109.47440 * 180.02562 * 5 3 2 37 37 H 0.97002 * 120.00115 * 245.00746 * 9 6 3 38 38 H 1.09000 * 109.47229 * 60.00363 * 12 10 9 39 39 H 1.09003 * 109.47630 * 300.00294 * 12 10 9 40 40 H 0.97008 * 120.00303 * 354.69126 * 18 17 15 41 41 H 1.08005 * 119.99967 * 359.97438 * 24 23 13 42 42 H 1.07999 * 119.99448 * 180.27078 * 25 24 23 43 43 H 1.07997 * 119.99991 * 179.83259 * 26 25 24 44 44 H 1.07993 * 119.99965 * 180.02562 * 27 26 25 45 45 H 1.07999 * 120.00249 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5647 1.4445 -0.1257 6 16 1.5599 2.2536 1.5499 7 8 2.2658 1.6900 2.6470 8 8 0.1518 2.4373 1.6014 9 7 2.1681 3.7884 1.4189 10 6 1.6933 4.6227 0.4729 11 8 0.8205 4.2497 -0.2820 12 6 2.2463 6.0195 0.3539 13 6 1.5407 6.7518 -0.7893 14 1 1.6174 6.1603 -1.7016 15 6 0.0883 6.9489 -0.4390 16 1 -0.2145 7.0062 0.5962 17 6 -0.8539 7.0561 -1.4398 18 7 -0.4734 7.1193 -2.6970 19 14 -2.6706 7.1193 -1.0094 20 1 -3.4702 7.2411 -2.2548 21 1 -3.0535 5.8751 -0.2949 22 1 -2.9320 8.2919 -0.1366 23 6 2.1922 8.0936 -1.0043 24 6 2.1190 9.0629 -0.0214 25 6 2.7204 10.2922 -0.2169 26 6 3.3871 10.5553 -1.3989 27 6 3.4559 9.5878 -2.3838 28 6 2.8582 8.3570 -2.1865 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.9994 0.9055 0.7162 35 1 3.8531 0.9571 -1.0570 36 1 3.9281 2.4721 -0.1252 37 1 2.8660 4.0867 2.0228 38 1 3.3158 5.9707 0.1493 39 1 2.0792 6.5573 1.2873 40 1 0.4703 7.1682 -2.9164 41 1 1.5945 8.8587 0.9004 42 1 2.6669 11.0479 0.5528 43 1 3.8547 11.5166 -1.5526 44 1 3.9771 9.7933 -3.3071 45 1 2.9120 7.6011 -2.9560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796834118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:14 Heat of formation + Delta-G solvation = -103.359888 kcal Electronic energy + Delta-G solvation = -28328.791453 eV Core-core repulsion = 24437.859766 eV Total energy + Delta-G solvation = -3890.931687 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.71086 -38.45675 -37.10486 -36.21330 -35.90079 -34.53317 -34.04649 -31.41924 -30.44859 -30.18283 -29.09150 -25.36821 -24.27558 -23.20000 -22.14163 -21.81388 -21.26167 -19.83537 -19.29317 -18.07198 -17.21924 -16.85946 -16.69019 -15.95221 -15.26795 -15.18560 -14.52568 -14.32459 -14.21876 -14.08269 -13.85922 -13.73695 -13.60201 -13.19237 -12.96937 -12.72166 -12.53870 -12.38074 -12.30077 -12.04604 -11.96326 -11.95911 -11.63505 -11.52585 -11.41734 -11.18358 -11.11378 -10.73704 -10.60477 -10.51478 -10.24026 -10.11214 -10.05645 -9.80490 -9.61108 -8.72628 -8.36154 -8.20894 -7.72535 -6.29731 -4.00782 0.13885 2.11860 2.16232 2.48165 2.75074 3.49712 3.57355 3.67402 3.71561 4.10345 4.25943 4.51617 4.55711 4.62687 4.81485 4.91606 5.10648 5.17830 5.23331 5.26720 5.46089 5.51609 5.53764 5.55610 5.57758 5.67364 5.75923 5.77336 5.80631 5.87728 5.90713 6.05656 6.21777 6.23268 6.30863 6.48439 6.69351 6.81865 6.96453 7.07454 7.15760 7.29440 7.61780 7.77493 8.07914 8.14099 8.43892 8.89487 9.68246 11.09442 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012384 B = 0.004068 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.362592 B = 6881.649610 C = 8043.677916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.104 4.104 3 C -0.585 4.585 4 H 0.151 0.849 5 C -0.139 4.139 6 S 2.591 3.409 7 O -0.958 6.958 8 O -0.924 6.924 9 N -1.062 6.062 10 C 0.529 3.471 11 O -0.453 6.453 12 C -0.119 4.119 13 C 0.070 3.930 14 H 0.052 0.948 15 C -0.576 4.576 16 H 0.049 0.951 17 C 0.036 3.964 18 N -0.903 5.903 19 Si 1.055 2.945 20 H -0.283 1.283 21 H -0.284 1.284 22 H -0.289 1.289 23 C -0.035 4.035 24 C -0.106 4.106 25 C -0.129 4.129 26 C -0.151 4.151 27 C -0.125 4.125 28 C -0.129 4.129 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.427 0.573 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.271 0.729 41 H 0.116 0.884 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.096 -7.616 5.293 14.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.143 4.143 3 C -0.696 4.696 4 H 0.169 0.831 5 C -0.197 4.197 6 S 2.685 3.315 7 O -0.949 6.949 8 O -0.914 6.914 9 N -0.829 5.829 10 C 0.316 3.684 11 O -0.320 6.320 12 C -0.161 4.161 13 C 0.051 3.949 14 H 0.070 0.930 15 C -0.613 4.613 16 H 0.067 0.933 17 C -0.170 4.170 18 N -0.538 5.538 19 Si 0.884 3.116 20 H -0.209 1.209 21 H -0.210 1.210 22 H -0.216 1.216 23 C -0.035 4.035 24 C -0.124 4.124 25 C -0.148 4.148 26 C -0.169 4.169 27 C -0.143 4.143 28 C -0.148 4.148 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.262 0.738 38 H 0.096 0.904 39 H 0.110 0.890 40 H 0.082 0.918 41 H 0.134 0.866 42 H 0.126 0.874 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.387 -8.166 4.750 12.633 hybrid contribution 2.100 0.353 0.350 2.158 sum 10.487 -7.813 5.100 14.037 Atomic orbital electron populations 1.22247 0.94289 1.03164 1.04806 1.21350 0.96962 0.91664 1.04369 1.30346 1.06336 1.09431 1.23499 0.83113 1.21605 0.89950 1.03532 1.04591 1.05929 0.75041 0.73820 0.76677 1.93588 1.75057 1.77307 1.48928 1.93656 1.28665 1.83143 1.85957 1.55254 1.51864 1.32263 1.43516 1.21005 0.81032 0.88365 0.77981 1.90903 1.25689 1.75533 1.39843 1.21842 0.99646 0.90940 1.03678 1.17927 0.94858 0.88190 0.93971 0.92984 1.21587 0.90210 1.54806 0.94696 0.93304 1.25576 1.05338 0.92898 0.93223 1.70761 1.19499 1.45139 1.18408 0.83747 0.75573 0.76658 0.75636 1.20884 1.21026 1.21595 1.20778 0.91330 0.98832 0.92609 1.20942 0.98634 0.92936 0.99889 1.21029 0.99307 0.97084 0.97331 1.20845 1.02395 0.98773 0.94873 1.20969 1.00676 0.94217 0.98410 1.21058 0.98914 0.96950 0.97840 0.90939 0.91368 0.90847 0.89347 0.90748 0.90779 0.90156 0.91287 0.73760 0.90394 0.89040 0.91810 0.86571 0.87379 0.87537 0.87417 0.87131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.29 9.60 37.16 0.36 -1.93 16 2 C -0.10 -1.11 5.40 -26.73 -0.14 -1.26 16 3 C -0.59 -7.14 2.73 -26.73 -0.07 -7.21 16 4 H 0.15 2.04 7.19 -51.92 -0.37 1.67 16 5 C -0.14 -1.30 9.06 37.16 0.34 -0.97 16 6 S 2.59 38.81 4.20 -107.50 -0.45 38.36 16 7 O -0.96 -14.72 17.96 -57.54 -1.03 -15.76 16 8 O -0.92 -17.94 14.79 -64.79 -0.96 -18.90 16 9 N -1.06 -14.79 5.28 31.22 0.16 -14.62 16 10 C 0.53 9.53 7.32 -10.99 -0.08 9.45 16 11 O -0.45 -10.15 13.12 -11.56 -0.15 -10.30 16 12 C -0.12 -2.07 4.95 -27.88 -0.14 -2.21 16 13 C 0.07 1.56 1.23 -92.92 -0.11 1.44 16 14 H 0.05 1.29 6.59 -51.93 -0.34 0.94 16 15 C -0.58 -15.10 6.35 -34.44 -0.22 -15.32 16 16 H 0.05 1.29 7.82 -52.48 -0.41 0.88 16 17 C 0.04 1.00 5.45 -17.83 -0.10 0.91 16 18 N -0.90 -26.67 13.56 55.43 0.75 -25.91 16 19 Si 1.06 26.06 29.91 -169.99 -5.08 20.97 16 20 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 C -0.03 -0.72 4.53 -104.62 -0.47 -1.19 16 24 C -0.11 -2.05 8.90 -39.58 -0.35 -2.40 16 25 C -0.13 -2.22 10.05 -39.58 -0.40 -2.61 16 26 C -0.15 -2.48 10.05 -39.58 -0.40 -2.88 16 27 C -0.12 -2.15 10.05 -39.58 -0.40 -2.55 16 28 C -0.13 -2.53 9.18 -39.58 -0.36 -2.89 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.03 5.61 -51.93 -0.29 0.74 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.61 8.11 -51.93 -0.42 0.19 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.60 7.91 -51.93 -0.41 0.19 16 37 H 0.43 4.22 8.79 -34.47 -0.30 3.92 16 38 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.09 1.48 7.96 -51.93 -0.41 1.06 16 40 H 0.27 7.78 6.24 -40.82 -0.25 7.52 16 41 H 0.12 2.20 7.85 -52.48 -0.41 1.78 16 42 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 43 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 44 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 45 H 0.11 2.11 7.95 -52.49 -0.42 1.69 16 LS Contribution 380.04 15.07 5.73 5.73 Total: -1.00 -35.26 380.04 -10.24 -45.50 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -6.65 Total: 6.55 kcal Atomic # 6 Polarization: -29.06 SS G_CDS: -2.56 Total: -31.61 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.92 Total: -40.54 kcal Atomic # 8 Polarization: -42.82 SS G_CDS: -2.14 Total: -44.96 kcal Atomic # 14 Polarization: 26.06 SS G_CDS: -5.08 Total: 20.97 kcal Atomic # 16 Polarization: 38.81 SS G_CDS: -0.45 Total: 38.36 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.26 -10.24 -45.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796834118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.860 kcal (2) G-P(sol) polarization free energy of solvation -35.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds