Wall clock time and date at job start Sat Apr 11 2020 05:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46713 * 2 1 4 4 H 1.08999 * 109.47197 * 305.00045 * 3 2 1 5 5 C 1.52995 * 109.47072 * 184.99912 * 3 2 1 6 6 S 1.81400 * 109.47419 * 64.99571 * 3 2 1 7 7 O 1.42107 * 110.53904 * 68.37535 * 6 3 2 8 8 O 1.42098 * 110.54494 * 291.62778 * 6 3 2 9 9 N 1.65601 * 104.45278 * 179.97438 * 6 3 2 10 10 C 1.34777 * 119.99506 * 64.99689 * 9 6 3 11 11 O 1.21283 * 120.00046 * 0.02562 * 10 9 6 12 12 C 1.50698 * 119.99686 * 179.97438 * 10 9 6 13 13 C 1.53005 * 109.46990 * 180.02562 * 12 10 9 14 14 H 1.08994 * 109.46934 * 305.97546 * 13 12 10 15 15 C 1.50700 * 109.47299 * 65.97885 * 13 12 10 16 16 H 1.08008 * 119.99531 * 26.90748 * 15 13 12 17 17 C 1.37869 * 120.00160 * 206.90965 * 15 13 12 18 18 N 1.31508 * 120.00032 * 353.27812 * 17 15 13 19 19 Si 1.86806 * 120.00073 * 173.54969 * 17 15 13 20 20 H 1.48497 * 109.46895 * 179.72442 * 19 17 15 21 21 H 1.48495 * 109.46957 * 299.72695 * 19 17 15 22 22 H 1.48501 * 109.46761 * 59.72686 * 19 17 15 23 23 C 1.50705 * 109.47056 * 185.97689 * 13 12 10 24 24 C 1.38237 * 120.00118 * 294.44966 * 23 13 12 25 25 C 1.38237 * 119.99818 * 179.78603 * 24 23 13 26 26 C 1.38236 * 120.00003 * 0.44191 * 25 24 23 27 27 C 1.38236 * 119.99991 * 359.81061 * 26 25 24 28 28 C 1.38228 * 119.99825 * 114.71859 * 23 13 12 29 29 H 1.09001 * 109.47050 * 60.00375 * 1 2 3 30 30 H 1.09007 * 109.46448 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47375 * 300.00001 * 1 2 3 32 32 H 1.09001 * 109.47375 * 239.99999 * 2 1 3 33 33 H 1.09001 * 109.47050 * 119.99625 * 2 1 3 34 34 H 1.09002 * 109.47339 * 299.99615 * 5 3 2 35 35 H 1.09001 * 109.47169 * 59.99582 * 5 3 2 36 36 H 1.09000 * 109.47440 * 180.02562 * 5 3 2 37 37 H 0.97002 * 120.00115 * 245.00746 * 9 6 3 38 38 H 1.09000 * 109.47229 * 60.00363 * 12 10 9 39 39 H 1.09003 * 109.47630 * 300.00294 * 12 10 9 40 40 H 0.97008 * 120.00303 * 354.69126 * 18 17 15 41 41 H 1.08005 * 119.99967 * 359.97438 * 24 23 13 42 42 H 1.07999 * 119.99448 * 180.27078 * 25 24 23 43 43 H 1.07997 * 119.99991 * 179.83259 * 26 25 24 44 44 H 1.07993 * 119.99965 * 180.02562 * 27 26 25 45 45 H 1.07999 * 120.00249 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5647 1.4445 -0.1257 6 16 1.5599 2.2536 1.5499 7 8 2.2658 1.6900 2.6470 8 8 0.1518 2.4373 1.6014 9 7 2.1681 3.7884 1.4189 10 6 1.6933 4.6227 0.4729 11 8 0.8205 4.2497 -0.2820 12 6 2.2463 6.0195 0.3539 13 6 1.5407 6.7518 -0.7893 14 1 1.6174 6.1603 -1.7016 15 6 0.0883 6.9489 -0.4390 16 1 -0.2145 7.0062 0.5962 17 6 -0.8539 7.0561 -1.4398 18 7 -0.4734 7.1193 -2.6970 19 14 -2.6706 7.1193 -1.0094 20 1 -3.4702 7.2411 -2.2548 21 1 -3.0535 5.8751 -0.2949 22 1 -2.9320 8.2919 -0.1366 23 6 2.1922 8.0936 -1.0043 24 6 2.1190 9.0629 -0.0214 25 6 2.7204 10.2922 -0.2169 26 6 3.3871 10.5553 -1.3989 27 6 3.4559 9.5878 -2.3838 28 6 2.8582 8.3570 -2.1865 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.9994 0.9055 0.7162 35 1 3.8531 0.9571 -1.0570 36 1 3.9281 2.4721 -0.1252 37 1 2.8660 4.0867 2.0228 38 1 3.3158 5.9707 0.1493 39 1 2.0792 6.5573 1.2873 40 1 0.4703 7.1682 -2.9164 41 1 1.5945 8.8587 0.9004 42 1 2.6669 11.0479 0.5528 43 1 3.8547 11.5166 -1.5526 44 1 3.9771 9.7933 -3.3071 45 1 2.9120 7.6011 -2.9560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796834118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:13 Heat of formation + Delta-G solvation = -126.693179 kcal Electronic energy + Delta-G solvation = -28329.803260 eV Core-core repulsion = 24437.859766 eV Total energy + Delta-G solvation = -3891.943494 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.19283 -39.89539 -38.37524 -37.34691 -36.98723 -36.22233 -35.45841 -33.28559 -31.58548 -31.34604 -30.50021 -27.18369 -25.15560 -24.93679 -23.24639 -23.10563 -22.63061 -21.42373 -20.54783 -19.35029 -18.80284 -18.37148 -17.98463 -17.32248 -16.72894 -16.43970 -15.89206 -15.69383 -15.64559 -15.51300 -15.15983 -15.00973 -14.76043 -14.61832 -14.20830 -14.04380 -13.97416 -13.77480 -13.49427 -13.48184 -13.26779 -13.19723 -12.96476 -12.75719 -12.65680 -12.46760 -12.36707 -12.09546 -12.06426 -11.96241 -11.91012 -11.73414 -11.51344 -11.25266 -11.08157 -10.61237 -10.41496 -9.61610 -9.26361 -8.44401 -6.12802 -1.03472 0.70321 0.74929 1.17904 1.39720 1.47759 1.57414 1.72683 2.50521 2.59773 2.99766 3.11728 3.29595 3.34587 3.45904 3.66450 3.94674 4.05119 4.14728 4.26162 4.26588 4.29033 4.30825 4.43582 4.47736 4.50365 4.61476 4.66543 4.73265 4.83686 4.87133 4.90237 4.97019 5.04217 5.08569 5.23422 5.24856 5.40570 5.43915 5.76574 5.77565 5.84535 5.95076 6.23733 6.32167 6.41420 6.70113 6.80428 7.60475 8.96043 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012384 B = 0.004068 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.362592 B = 6881.649610 C = 8043.677916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.108 4.108 3 C -0.567 4.567 4 H 0.135 0.865 5 C -0.144 4.144 6 S 2.585 3.415 7 O -0.963 6.963 8 O -0.977 6.977 9 N -1.045 6.045 10 C 0.535 3.465 11 O -0.505 6.505 12 C -0.117 4.117 13 C 0.070 3.930 14 H 0.018 0.982 15 C -0.566 4.566 16 H 0.039 0.961 17 C -0.016 4.016 18 N -0.939 5.939 19 Si 1.084 2.916 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.268 1.268 23 C -0.055 4.055 24 C -0.123 4.123 25 C -0.127 4.127 26 C -0.144 4.144 27 C -0.126 4.126 28 C -0.148 4.148 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.048 0.952 32 H 0.118 0.882 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.446 0.554 38 H 0.119 0.881 39 H 0.107 0.893 40 H 0.265 0.735 41 H 0.113 0.887 42 H 0.139 0.861 43 H 0.144 0.856 44 H 0.135 0.865 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.762 -6.981 5.990 16.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.146 4.146 3 C -0.681 4.681 4 H 0.153 0.847 5 C -0.202 4.202 6 S 2.684 3.316 7 O -0.954 6.954 8 O -0.967 6.967 9 N -0.813 5.813 10 C 0.323 3.677 11 O -0.375 6.375 12 C -0.159 4.159 13 C 0.051 3.949 14 H 0.037 0.963 15 C -0.604 4.604 16 H 0.057 0.943 17 C -0.216 4.216 18 N -0.577 5.577 19 Si 0.910 3.090 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.193 1.193 23 C -0.056 4.056 24 C -0.141 4.141 25 C -0.145 4.145 26 C -0.162 4.162 27 C -0.143 4.143 28 C -0.166 4.166 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.067 0.933 32 H 0.136 0.864 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.120 0.880 36 H 0.093 0.907 37 H 0.285 0.715 38 H 0.137 0.863 39 H 0.125 0.875 40 H 0.075 0.925 41 H 0.131 0.869 42 H 0.157 0.843 43 H 0.162 0.838 44 H 0.153 0.847 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 11.085 -7.495 5.536 14.481 hybrid contribution 1.401 0.128 0.163 1.416 sum 12.486 -7.367 5.699 15.577 Atomic orbital electron populations 1.22313 0.95926 1.04250 1.02829 1.21519 0.95615 0.90787 1.06719 1.30194 1.08639 1.09748 1.19559 0.84690 1.21782 0.87269 1.04680 1.06471 1.05978 0.73938 0.73873 0.77821 1.93572 1.74586 1.77071 1.50135 1.93599 1.31974 1.83911 1.87238 1.54873 1.51788 1.31850 1.42785 1.21103 0.80141 0.88786 0.77691 1.90895 1.28058 1.76520 1.42065 1.21812 1.01450 0.90104 1.02521 1.17772 0.93565 0.89479 0.94129 0.96340 1.21868 0.92594 1.52247 0.93684 0.94317 1.26477 1.08203 0.93494 0.93430 1.70819 1.19138 1.48542 1.19183 0.83360 0.73019 0.77054 0.75580 1.21162 1.21730 1.19270 1.20551 0.93096 0.98058 0.93878 1.21028 0.99564 0.93861 0.99610 1.21389 0.98013 0.96624 0.98432 1.21302 1.01153 0.99862 0.93891 1.21304 0.99952 0.93260 0.99831 1.21138 1.00012 0.98177 0.97296 0.92503 0.88766 0.93312 0.86383 0.88830 0.89080 0.88037 0.90659 0.71514 0.86340 0.87461 0.92487 0.86870 0.84295 0.83837 0.84721 0.88039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.80 9.60 71.98 0.69 -4.11 16 2 C -0.11 -2.11 5.40 30.60 0.17 -1.94 16 3 C -0.57 -13.35 2.73 30.59 0.08 -13.27 16 4 H 0.14 3.75 7.19 -2.39 -0.02 3.73 16 5 C -0.14 -2.33 9.06 71.98 0.65 -1.68 16 6 S 2.59 77.75 4.20 -56.49 -0.24 77.51 16 7 O -0.96 -28.71 17.96 -127.65 -2.29 -31.00 16 8 O -0.98 -39.84 14.79 -120.72 -1.79 -41.62 16 9 N -1.05 -28.68 5.28 -173.53 -0.92 -29.60 16 10 C 0.53 19.51 7.32 87.66 0.64 20.15 16 11 O -0.50 -23.70 13.12 13.33 0.17 -23.53 16 12 C -0.12 -4.03 4.95 29.85 0.15 -3.88 16 13 C 0.07 3.19 1.23 -12.28 -0.02 3.18 16 14 H 0.02 0.96 6.59 -2.39 -0.02 0.94 16 15 C -0.57 -30.57 6.35 25.60 0.16 -30.41 16 16 H 0.04 2.10 7.82 -2.91 -0.02 2.08 16 17 C -0.02 -0.94 5.45 84.65 0.46 -0.48 16 18 N -0.94 -57.69 13.56 21.44 0.29 -57.40 16 19 Si 1.08 54.15 29.91 68.60 2.05 56.20 16 20 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 21 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 23 C -0.06 -2.28 4.53 -19.87 -0.09 -2.37 16 24 C -0.12 -4.59 8.90 22.27 0.20 -4.39 16 25 C -0.13 -3.94 10.05 22.27 0.22 -3.72 16 26 C -0.14 -4.21 10.05 22.27 0.22 -3.98 16 27 C -0.13 -4.04 10.05 22.27 0.22 -3.82 16 28 C -0.15 -5.74 9.18 22.27 0.20 -5.54 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 31 H 0.05 1.44 5.61 -2.39 -0.01 1.43 16 32 H 0.12 1.68 8.14 -2.39 -0.02 1.67 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.09 1.20 8.11 -2.39 -0.02 1.18 16 35 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.07 1.13 7.91 -2.39 -0.02 1.11 16 37 H 0.45 8.17 8.79 -96.74 -0.85 7.32 16 38 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 39 H 0.11 3.36 7.96 -2.39 -0.02 3.34 16 40 H 0.26 15.96 6.24 -92.70 -0.58 15.38 16 41 H 0.11 4.19 7.85 -2.91 -0.02 4.17 16 42 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 43 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 44 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 45 H 0.10 4.00 7.95 -2.91 -0.02 3.98 16 Total: -1.00 -80.93 380.04 1.59 -79.34 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: 0.33 Total: 26.35 kcal Atomic # 6 Polarization: -60.23 SS G_CDS: 3.97 Total: -56.26 kcal Atomic # 7 Polarization: -86.37 SS G_CDS: -0.63 Total: -87.00 kcal Atomic # 8 Polarization: -92.24 SS G_CDS: -3.90 Total: -96.15 kcal Atomic # 14 Polarization: 54.15 SS G_CDS: 2.05 Total: 56.20 kcal Atomic # 16 Polarization: 77.75 SS G_CDS: -0.24 Total: 77.51 kcal Total: -80.93 1.59 -79.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796834118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.357 kcal (2) G-P(sol) polarization free energy of solvation -80.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds