Wall clock time and date at job start Sat Apr 11 2020 05:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.47258 * 2 1 4 4 H 1.09005 * 109.46753 * 305.00077 * 3 2 1 5 5 C 1.53005 * 109.47297 * 185.00219 * 3 2 1 6 6 S 1.81393 * 109.47494 * 64.99953 * 3 2 1 7 7 O 1.42101 * 110.54360 * 291.62412 * 6 3 2 8 8 O 1.42095 * 110.54439 * 68.37710 * 6 3 2 9 9 N 1.65602 * 104.45175 * 180.02562 * 6 3 2 10 10 C 1.34775 * 120.00314 * 64.99848 * 9 6 3 11 11 O 1.21277 * 119.99591 * 0.02562 * 10 9 6 12 12 C 1.50696 * 120.00092 * 180.02562 * 10 9 6 13 13 C 1.52997 * 109.47231 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.47200 * 54.99906 * 13 12 10 15 15 C 1.50697 * 109.47124 * 295.00046 * 13 12 10 16 16 H 1.07997 * 120.00382 * 325.84962 * 15 13 12 17 17 C 1.37883 * 120.00108 * 145.84772 * 15 13 12 18 18 N 1.31518 * 119.99840 * 6.11655 * 17 15 13 19 19 Si 1.86795 * 120.00333 * 186.11795 * 17 15 13 20 20 H 1.48508 * 109.47217 * 59.99955 * 19 17 15 21 21 H 1.48500 * 109.47297 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47284 * 300.00146 * 19 17 15 23 23 C 1.50705 * 109.47405 * 174.99912 * 13 12 10 24 24 C 1.38238 * 119.99535 * 63.46294 * 23 13 12 25 25 C 1.38235 * 119.99594 * 179.81039 * 24 23 13 26 26 C 1.38238 * 120.00073 * 0.39862 * 25 24 23 27 27 C 1.38244 * 119.99901 * 359.85698 * 26 25 24 28 28 C 1.38230 * 119.99828 * 359.95535 * 27 26 25 29 29 H 1.08998 * 109.46791 * 300.00008 * 1 2 3 30 30 H 1.09001 * 109.46880 * 59.99964 * 1 2 3 31 31 H 1.08998 * 109.47014 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46537 * 239.99540 * 2 1 3 33 33 H 1.09001 * 109.46880 * 120.00036 * 2 1 3 34 34 H 1.08998 * 109.47089 * 179.97438 * 5 3 2 35 35 H 1.08997 * 109.46737 * 59.99235 * 5 3 2 36 36 H 1.09000 * 109.46559 * 300.00100 * 5 3 2 37 37 H 0.97006 * 119.99884 * 245.00373 * 9 6 3 38 38 H 1.08995 * 109.47216 * 299.99904 * 12 10 9 39 39 H 1.09001 * 109.47160 * 60.00024 * 12 10 9 40 40 H 0.96996 * 120.00071 * 179.97438 * 18 17 15 41 41 H 1.07990 * 120.00312 * 0.02562 * 24 23 13 42 42 H 1.07995 * 120.00219 * 180.22890 * 25 24 23 43 43 H 1.07994 * 120.00115 * 179.82777 * 26 25 24 44 44 H 1.07998 * 119.99844 * 179.97438 * 27 26 25 45 45 H 1.08004 * 119.99863 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9814 -0.8419 5 6 3.5649 1.4443 -0.1258 6 16 1.5603 2.2535 1.5499 7 8 0.1521 2.4374 1.6014 8 8 2.2660 1.6900 2.6469 9 7 2.1673 3.7886 1.4182 10 6 1.6917 4.6226 0.4723 11 8 0.8187 4.2489 -0.2821 12 6 2.2446 6.0193 0.3521 13 6 1.5388 6.7505 -0.7915 14 1 0.4611 6.7220 -0.6307 15 6 1.8696 6.0770 -2.0984 16 1 2.8438 5.6351 -2.2468 17 6 0.9285 6.0248 -3.1047 18 7 -0.2126 6.6651 -2.9717 19 14 1.2741 5.0448 -4.6569 20 1 1.5001 3.6203 -4.3029 21 1 0.1124 5.1475 -5.5762 22 1 2.4844 5.5867 -5.3253 23 6 2.0027 8.1838 -0.8335 24 6 3.3279 8.4738 -1.0995 25 6 3.7526 9.7886 -1.1419 26 6 2.8539 10.8131 -0.9102 27 6 1.5297 10.5228 -0.6389 28 6 1.1043 9.2082 -0.6004 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.9282 2.4719 -0.1262 35 1 3.8532 0.9568 -1.0571 36 1 3.9995 0.9052 0.7160 37 1 2.8654 4.0875 2.0218 38 1 2.0784 6.5574 1.2853 39 1 3.3139 5.9703 0.1464 40 1 -0.8745 6.6287 -3.6798 41 1 4.0305 7.6733 -1.2777 42 1 4.7871 10.0153 -1.3534 43 1 3.1862 11.8401 -0.9406 44 1 0.8277 11.3232 -0.4575 45 1 0.0699 8.9814 -0.3880 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796834129.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:17 Heat of formation + Delta-G solvation = -100.888260 kcal Electronic energy + Delta-G solvation = -28392.402398 eV Core-core repulsion = 24501.577889 eV Total energy + Delta-G solvation = -3890.824509 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.58148 -38.30223 -37.05199 -36.13637 -35.84421 -34.27324 -33.91876 -31.55690 -30.36087 -30.05477 -28.94831 -25.80560 -24.18433 -23.16438 -22.06226 -21.73738 -21.14803 -19.57562 -19.18645 -17.95961 -17.00856 -16.80494 -16.51795 -15.86628 -15.12995 -14.92260 -14.68275 -14.31365 -14.16328 -14.03857 -13.90813 -13.77696 -13.57085 -13.09032 -12.72195 -12.59161 -12.43263 -12.30229 -12.05686 -12.03622 -11.92560 -11.89945 -11.68207 -11.43881 -11.34457 -11.09224 -10.98469 -10.84918 -10.69749 -10.51305 -10.31875 -10.15305 -10.02534 -9.61848 -9.45825 -9.11256 -8.45628 -8.08935 -7.67363 -6.03693 -4.05532 0.21600 2.24322 2.28765 2.57384 2.84870 3.29908 3.35195 3.36190 3.73375 4.19186 4.35770 4.41419 4.61574 4.69579 4.89615 5.01447 5.21163 5.25675 5.28318 5.38146 5.44262 5.60191 5.62715 5.67436 5.68383 5.78423 5.84379 5.89375 5.93985 5.98536 5.99707 6.20643 6.25689 6.36342 6.44253 6.63257 6.83629 6.94705 7.08379 7.27011 7.36458 7.46211 7.74666 7.87996 7.97021 8.20967 8.27775 8.95273 9.57430 11.06055 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012797 B = 0.004178 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.490578 B = 6700.080408 C = 7855.961192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.105 4.105 3 C -0.585 4.585 4 H 0.154 0.846 5 C -0.138 4.138 6 S 2.592 3.408 7 O -0.930 6.930 8 O -0.960 6.960 9 N -1.063 6.063 10 C 0.528 3.472 11 O -0.450 6.450 12 C -0.124 4.124 13 C 0.076 3.924 14 H 0.076 0.924 15 C -0.504 4.504 16 H 0.053 0.947 17 C 0.081 3.919 18 N -0.875 5.875 19 Si 0.885 3.115 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.279 1.279 23 C -0.022 4.022 24 C -0.115 4.115 25 C -0.132 4.132 26 C -0.154 4.154 27 C -0.128 4.128 28 C -0.118 4.118 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.427 0.573 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.262 0.738 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.683 -5.643 7.455 12.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.144 4.144 3 C -0.696 4.696 4 H 0.172 0.828 5 C -0.196 4.196 6 S 2.687 3.313 7 O -0.921 6.921 8 O -0.951 6.951 9 N -0.830 5.830 10 C 0.315 3.685 11 O -0.316 6.316 12 C -0.167 4.167 13 C 0.057 3.943 14 H 0.094 0.906 15 C -0.542 4.542 16 H 0.071 0.929 17 C -0.124 4.124 18 N -0.511 5.511 19 Si 0.713 3.287 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.204 1.204 23 C -0.023 4.023 24 C -0.133 4.133 25 C -0.150 4.150 26 C -0.173 4.173 27 C -0.146 4.146 28 C -0.136 4.136 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.262 0.738 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.072 0.928 41 H 0.131 0.869 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.309 -6.195 7.484 11.584 hybrid contribution 0.839 -0.216 -1.468 1.704 sum 7.148 -6.411 6.016 11.331 Atomic orbital electron populations 1.22239 0.94420 1.03052 1.04719 1.21347 0.96864 0.91855 1.04311 1.30335 1.06495 1.09236 1.23502 0.82802 1.21596 0.89891 1.03720 1.04420 1.05841 0.74945 0.73849 0.76622 1.93627 1.28938 1.83345 1.86145 1.93580 1.75017 1.77367 1.49106 1.55276 1.51978 1.32274 1.43454 1.21054 0.81279 0.88646 0.77524 1.90914 1.26585 1.75783 1.38328 1.21966 1.01906 0.90715 1.02075 1.17901 0.98172 0.86154 0.92070 0.90621 1.20666 0.99290 1.36154 0.98046 0.92920 1.24825 0.94938 0.94535 0.98077 1.69889 1.07132 1.40684 1.33433 0.86791 0.77676 0.80962 0.83309 1.20262 1.21317 1.20427 1.20658 0.92198 0.97641 0.91774 1.20932 0.96399 0.95392 1.00614 1.20976 0.98604 0.93468 1.01934 1.20812 0.94059 0.98027 1.04353 1.20995 0.95534 0.96472 1.01574 1.21097 0.99599 0.92158 1.00732 0.90900 0.90970 0.91464 0.89386 0.90809 0.91038 0.90210 0.90942 0.73813 0.90412 0.89370 0.92839 0.86872 0.87652 0.87785 0.87595 0.86747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.37 9.60 37.16 0.36 -2.01 16 2 C -0.10 -1.20 5.40 -26.73 -0.14 -1.35 16 3 C -0.58 -7.76 2.73 -26.73 -0.07 -7.83 16 4 H 0.15 2.35 7.19 -51.92 -0.37 1.97 16 5 C -0.14 -1.48 9.06 37.16 0.34 -1.15 16 6 S 2.59 39.33 4.20 -107.50 -0.45 38.88 16 7 O -0.93 -17.68 14.78 -64.80 -0.96 -18.64 16 8 O -0.96 -14.92 17.96 -57.54 -1.03 -15.96 16 9 N -1.06 -14.90 5.29 31.22 0.17 -14.73 16 10 C 0.53 9.52 7.32 -10.99 -0.08 9.44 16 11 O -0.45 -10.10 13.09 -11.60 -0.15 -10.25 16 12 C -0.12 -2.15 4.95 -27.89 -0.14 -2.29 16 13 C 0.08 1.69 1.67 -92.92 -0.16 1.54 16 14 H 0.08 1.95 6.98 -51.93 -0.36 1.59 16 15 C -0.50 -12.52 6.37 -34.44 -0.22 -12.74 16 16 H 0.05 1.27 7.82 -52.49 -0.41 0.86 16 17 C 0.08 2.15 5.45 -17.82 -0.10 2.06 16 18 N -0.88 -24.64 12.87 55.43 0.71 -23.93 16 19 Si 0.88 21.02 29.54 -169.99 -5.02 15.99 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 23 C -0.02 -0.46 4.77 -104.62 -0.50 -0.96 16 24 C -0.12 -2.17 8.86 -39.58 -0.35 -2.53 16 25 C -0.13 -2.24 10.05 -39.58 -0.40 -2.63 16 26 C -0.15 -2.57 10.05 -39.58 -0.40 -2.97 16 27 C -0.13 -2.26 10.05 -39.58 -0.40 -2.66 16 28 C -0.12 -2.38 9.67 -39.59 -0.38 -2.76 16 29 H 0.07 1.03 5.61 -51.93 -0.29 0.74 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.73 7.91 -51.93 -0.41 0.32 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 37 H 0.43 4.24 8.79 -34.47 -0.30 3.94 16 38 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.09 1.31 7.78 -51.93 -0.40 0.91 16 40 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.11 2.01 7.76 -52.49 -0.41 1.60 16 42 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 43 H 0.10 1.45 8.06 -52.49 -0.42 1.02 16 44 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 45 H 0.11 2.34 7.95 -52.48 -0.42 1.92 16 LS Contribution 382.28 15.07 5.76 5.76 Total: -1.00 -33.18 382.28 -10.36 -43.53 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -6.74 Total: 8.17 kcal Atomic # 6 Polarization: -26.20 SS G_CDS: -2.64 Total: -28.84 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.88 Total: -38.66 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -2.14 Total: -44.84 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 39.33 SS G_CDS: -0.45 Total: 38.88 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.18 -10.36 -43.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796834129.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.354 kcal (2) G-P(sol) polarization free energy of solvation -33.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds